Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01003913001 Vitis vinifera HOM05D004013 ORTHO05D004710 1.3e-282 975.7 487 100.0
Prupe.2G000200 Prunus persica HOM05D004013 ORTHO05D004710 8.1e-208 727.2 494 74.7
Atru.chr3.2025 Acer truncatum HOM05D004013 ORTHO05D004710 6.4e-205 717.6 494 74.7
MD00G1055200 Malus domestica HOM05D004013 ORTHO05D004710 1.9e-204 716.1 494 73.1
QL05p046231 Quercus lobata HOM05D004013 ORTHO05D004710 5.4e-204 714.5 503 72.4
Cfa000589 Carpinus fangiana HOM05D004013 ORTHO05D004710 1.3e-202 709.9 505 72.3
Dinv28066 Davidia involucrata HOM05D004013 ORTHO05D004710 3.6e-200 701.8 494 72.7
Duzib147G1378 Durio zibethinus HOM05D004013 ORTHO05D004710 4.7e-200 701.4 492 73.2
MD07G1000400 Malus domestica HOM05D004013 ORTHO05D004710 8.1e-200 700.7 494 71.7
CSS0003826 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 2.0e-198 696.0 494 71.1
CSS0048139 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 5.8e-198 694.5 494 70.9
Thecc.01G234100 Theobroma cacao HOM05D004013 ORTHO05D004710 5.8e-198 694.5 493 72.4
Gohir.D12G001900 Gossypium hirsutum HOM05D004013 ORTHO05D004710 1.3e-197 693.3 492 72.2
Gohir.A12G002200 Gossypium hirsutum HOM05D004013 ORTHO05D004710 3.8e-197 691.8 492 72.2
Gorai.008G001300 Gossypium raimondii HOM05D004013 ORTHO05D004710 4.9e-197 691.4 492 71.7
COL.COLO4_06916 Corchorus olitorius HOM05D004013 ORTHO05D004710 2.4e-196 689.1 496 72.2
Duzib264G0158 Durio zibethinus HOM05D004013 ORTHO05D004710 4.6e-195 684.9 492 72.2
Ciclev10019906m.g Citrus clementina HOM05D004013 ORTHO05D004710 2.3e-194 682.6 494 71.7
Potri.017G000500 Populus trichocarpa HOM05D004013 ORTHO05D004710 9.0e-191 670.6 494 70.6
Potri.007G147100 Populus trichocarpa HOM05D004013 ORTHO05D004710 1.3e-189 666.8 472 72.2
TAR365G0341 Trochodendron aralioides HOM05D004013 ORTHO05D004710 1.1e-188 663.7 496 70.4
CiPaw.10G057600 Carya illinoinensis HOM05D004013 ORTHO05D004710 4.2e-188 661.8 487 70.4
Hma1.2p1_0940F.1_g239620 Hydrangea macrophylla HOM05D004013 ORTHO05D004710 3.9e-186 655.2 494 67.6
TAR633G1686 Trochodendron aralioides HOM05D004013 ORTHO05D004710 3.6e-184 648.7 500 68.4
TWI63G0479 Tripterygium wilfordii HOM05D004013 ORTHO05D004710 6.9e-183 644.4 499 67.3
vmacro09116 Vaccinium macrocarpon HOM05D004013 ORTHO05D004710 1.5e-182 643.3 494 66.0
CiPaw.09G068100 Carya illinoinensis HOM05D004013 ORTHO05D004710 2.0e-182 642.9 401 78.6
VMungo1383G0353 Vigna mungo HOM05D004013 ORTHO05D004710 3.4e-182 642.1 497 66.8
Phvul.008G048900 Phaseolus vulgaris HOM05D004013 ORTHO05D004710 8.4e-181 637.5 495 66.7
Eucgr.K03157 Eucalyptus grandis HOM05D004013 ORTHO05D004710 5.5e-180 634.8 494 67.4
Lj1g0014615 Lotus japonicus HOM05D004013 ORTHO05D004710 9.3e-180 634.0 496 65.9
CsaV3_2G011360 Cucumis sativus L. HOM05D004013 ORTHO05D004710 1.2e-179 633.6 454 71.6
TWI15G0551 Tripterygium wilfordii HOM05D004013 ORTHO05D004710 1.6e-179 633.3 496 67.1
Glyma.09G244800 Glycine max HOM05D004013 ORTHO05D004710 1.8e-178 629.8 495 66.3
MELO3C008520.2 Cucumis melo HOM05D004013 ORTHO05D004710 2.3e-178 629.4 464 70.0
Lj6A740G51 Lonicera japonica HOM05D004013 ORTHO05D004710 8.7e-178 627.5 499 66.1
Ca_08048_v3 Cicer arietinum L. HOM05D004013 ORTHO05D004710 7.4e-177 624.4 498 66.1
Ca_08054_v3 Cicer arietinum L. HOM05D004013 ORTHO05D004710 7.4e-177 624.4 498 66.1
Medtr7g081230 Medicago truncatula HOM05D004013 ORTHO05D004710 2.1e-176 622.9 496 65.1
Lj3C865T7 Lonicera japonica HOM05D004013 ORTHO05D004710 1.1e-175 620.5 492 65.9
CANSAT78G0639 Cannabis sativa HOM05D004013 ORTHO05D004710 3.1e-175 619.0 444 69.6
Lalb_Chr01g0021691 Lupinus albus HOM05D004013 ORTHO05D004710 1.5e-174 616.7 467 68.3
Sed0016347 Sechium edule HOM05D004013 ORTHO05D004710 1.5e-174 616.7 488 66.2
TPR.G29111 Trifolium pratense HOM05D004013 ORTHO05D004710 2.0e-174 616.3 497 64.0
Haze_06261 Corylus avellana HOM05D004013 ORTHO05D004710 7.6e-174 614.4 745 49.1
Rhsim09G0091900 Rhododendron simsii HOM05D004013 ORTHO05D004710 1.7e-173 613.2 562 59.6
arahy.Tifrunner.gnm1.ann1.LVD0DC Arachis hypogaea HOM05D004013 ORTHO05D004710 5.5e-172 608.2 496 64.1
Cpa.g.sc9.235 Carica papaya HOM05D004013 ORTHO05D004710 7.1e-172 607.8 406 73.4
PSO732G0206 Papaver somniferum HOM05D004013 ORTHO05D004710 7.1e-172 607.8 462 66.7
arahy.Tifrunner.gnm1.ann1.M4STP7 Arachis hypogaea HOM05D004013 ORTHO05D004710 1.2e-171 607.1 496 63.3
Nn1g09391 Nelumbo nucifera HOM05D004013 ORTHO05D004710 6.0e-171 604.7 441 70.7
DCAR_023584 Daucus carota HOM05D004013 ORTHO05D004710 6.7e-170 601.3 474 65.0
PSO675G0050 Papaver somniferum HOM05D004013 ORTHO05D004710 1.9e-169 599.7 462 65.2
Manes.01G009000 Manihot esculenta HOM05D004013 ORTHO05D004710 3.3e-169 599.0 402 74.4
arahy.Tifrunner.gnm1.ann1.ERJ0Z2 Arachis hypogaea HOM05D004013 ORTHO05D004710 7.4e-169 597.8 506 62.5
Glyma.18G248400 Glycine max HOM05D004013 ORTHO05D004710 2.1e-168 596.3 494 63.8
ECA232G0201 Erigeron canadensis HOM05D004013 ORTHO05D004710 3.7e-168 595.5 464 65.5
Lalb_Chr03g0040611 Lupinus albus HOM05D004013 ORTHO05D004710 8.5e-165 584.3 465 64.9
Lsat_1_v5_gn_8_45601 Lactuca sativa HOM05D004013 ORTHO05D004710 1.1e-164 583.9 476 64.3
arahy.Tifrunner.gnm1.ann1.AL59ZJ Arachis hypogaea HOM05D004013 ORTHO05D004710 5.5e-164 581.6 495 62.4
ECA233G0032 Erigeron canadensis HOM05D004013 ORTHO05D004710 7.2e-164 581.3 464 64.2
Aa31LG1G25800 Aethionema arabicum HOM05D004013 ORTHO05D004710 4.6e-163 578.6 493 59.4
Psat0s3112g0040 Pisum sativum HOM05D004013 ORTHO05D004710 3.0e-162 575.9 488 60.9
AL4G43020 Arabidopsis lyrata HOM05D004013 ORTHO05D004710 5.1e-162 575.1 493 59.8
CSS0004368 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 6.7e-162 574.7 493 61.7
Sp4g26220 Schrenkiella parvula HOM05D004013 ORTHO05D004710 1.1e-161 573.9 495 59.8
PGR142G2472 Punica granatum HOM05D004013 ORTHO05D004710 9.7e-161 570.9 451 64.1
ATR0706G248 Amborella trichopoda HOM05D004013 ORTHO05D004710 2.2e-160 569.7 503 59.2
Hund22667 Selenicereus undatus HOM05D004013 ORTHO05D004710 2.8e-160 569.3 461 62.5
AT2G44140 Arabidopsis thaliana HOM05D004013 ORTHO05D004710 4.1e-159 565.5 492 58.9
vmacro10687 Vaccinium macrocarpon HOM05D004013 ORTHO05D004710 1.2e-158 563.9 565 54.5
HanXRQChr08g0212421 Helianthus annuus HOM05D004013 ORTHO05D004710 2.2e-157 559.7 406 69.5
EL10Ac3g06192 Beta vulgaris HOM05D004013 ORTHO05D004710 2.5e-156 556.2 522 57.9
AL5G42130 Arabidopsis lyrata HOM05D004013 ORTHO05D004710 4.2e-156 555.4 495 59.4
HanXRQChr12g0363401 Helianthus annuus HOM05D004013 ORTHO05D004710 5.5e-156 555.1 401 69.3
MBI15_g08971_MAGBIO Magnolia biondii HOM05D004013 ORTHO05D004710 1.6e-155 553.5 419 68.0
Migut.L00278 Erythranthe guttata HOM05D004013 ORTHO05D004710 7.9e-155 551.2 486 60.5
AT3G59950 Arabidopsis thaliana HOM05D004013 ORTHO05D004710 1.0e-154 550.8 496 58.7
CAN.G140.48 Capsicum annuum HOM05D004013 ORTHO05D004710 1.4e-154 550.4 487 59.5
PGSC0003DMG400032144 Solanum tuberosum HOM05D004013 ORTHO05D004710 1.4e-154 550.4 487 58.7
Sopen01g002230 Solanum pennellii HOM05D004013 ORTHO05D004710 1.8e-154 550.1 484 58.9
AUR62002510 Chenopodium quinoa HOM05D004013 ORTHO05D004710 3.0e-154 549.3 505 59.2
Solyc01g006230.3 Solanum lycopersicum HOM05D004013 ORTHO05D004710 3.9e-154 548.9 484 58.7
Sp5g03230 Schrenkiella parvula HOM05D004013 ORTHO05D004710 5.1e-154 548.5 494 58.1
Nitab4.5_0005132g0050 Nicotiana tabacum HOM05D004013 ORTHO05D004710 2.6e-153 546.2 397 67.8
Nitab4.5_0001568g0070 Nicotiana tabacum HOM05D004013 ORTHO05D004710 9.7e-153 544.3 397 67.8
CARHR170260 Cardamine hirsuta HOM05D004013 ORTHO05D004710 2.2e-152 543.1 439 62.2
CDE06G1594 Ceratophyllum demersum HOM05D004013 ORTHO05D004710 2.2e-152 543.1 495 58.6
Migut.L00578 Erythranthe guttata HOM05D004013 ORTHO05D004710 2.2e-152 543.1 411 66.4
Ah.07g203370 Amaranthus hybridus HOM05D004013 ORTHO05D004710 2.8e-152 542.7 492 59.1
CDE04G0030 Ceratophyllum demersum HOM05D004013 ORTHO05D004710 8.2e-152 541.2 475 60.4
C04p32840 Brassica napus HOM05D004013 ORTHO05D004710 1.8e-151 540.0 434 62.7
CARHR139300 Cardamine hirsuta HOM05D004013 ORTHO05D004710 1.8e-151 540.0 416 62.7
Thhalv10005940m.g Eutrema salsugineum HOM05D004013 ORTHO05D004710 4.1e-151 538.9 402 65.9
BcaC02g10096 Brassica carinata HOM05D004013 ORTHO05D004710 5.3e-151 538.5 434 62.7
BolC4t24846H Brassica oleracea HOM05D004013 ORTHO05D004710 5.3e-151 538.5 434 62.7
FvH4_2g06800 Fragaria vesca HOM05D004013 ORTHO05D004710 1.2e-150 537.3 434 64.5
MSTRG.23493 Avicennia marina HOM05D004013 ORTHO05D004710 2.0e-150 536.6 494 58.1
AUR62023683 Chenopodium quinoa HOM05D004013 ORTHO05D004710 1.3e-149 533.9 403 68.2
FAN20G2928 Fragaria x ananassa HOM05D004013 ORTHO05D004710 2.2e-149 533.1 434 64.5
FAN24G3388 Fragaria x ananassa HOM05D004013 ORTHO05D004710 6.5e-149 531.6 434 63.8
Oeu011024.1 Olea europaea HOM05D004013 ORTHO05D004710 6.5e-149 531.6 400 64.0
BcaB02g08204 Brassica carinata HOM05D004013 ORTHO05D004710 1.4e-148 530.4 402 64.2
SalBow7G0073 Salvia bowleyana HOM05D004013 ORTHO05D004710 1.9e-148 530.0 559 54.0
Carub.0005s2667 Capsella rubella HOM05D004013 ORTHO05D004710 5.5e-148 528.5 448 60.5
Os04g0682000 Oryza sativa ssp. japonica HOM05D004013 ORTHO05D004710 9.4e-148 527.7 469 58.2
SGA_v2.0_scaffold37G14795 Striga asiatica HOM05D004013 ORTHO05D004710 9.4e-148 527.7 411 63.5
RcHm_v2.0_Chr6g0259021 Rosa chinensis HOM05D004013 ORTHO05D004710 1.2e-147 527.3 430 64.9
Carub.0004s2669 Capsella rubella HOM05D004013 ORTHO05D004710 2.1e-147 526.6 402 62.4
FAN15G0687 Fragaria x ananassa HOM05D004013 ORTHO05D004710 4.7e-147 525.4 411 65.5
Dinv18636 Davidia involucrata HOM05D004013 ORTHO05D004710 7.9e-147 524.6 319 80.3
SGA_v2.0_scaffold3G01797 Striga asiatica HOM05D004013 ORTHO05D004710 1.4e-146 523.9 473 59.2
FAN27G1923 Fragaria x ananassa HOM05D004013 ORTHO05D004710 1.8e-146 523.5 422 64.2
HPP92_020809 Vanilla planifolia HOM05D004013 ORTHO05D004710 3.9e-146 522.3 507 57.2
BraA04t15923Z Brassica rapa HOM05D004013 ORTHO05D004710 6.7e-146 521.5 442 60.2
BraA09t40658Z Brassica rapa HOM05D004013 ORTHO05D004710 1.5e-145 520.4 490 56.1
SHI01175 Sapria himalayana HOM05D004013 ORTHO05D004710 2.0e-145 520.0 480 59.2
BcaC07g40400 Brassica carinata HOM05D004013 ORTHO05D004710 3.3e-145 519.2 490 56.9
DCAR_026793 Daucus carota HOM05D004013 ORTHO05D004710 5.7e-145 518.5 401 65.6
A04p01980 Brassica napus HOM05D004013 ORTHO05D004710 7.4e-145 518.1 443 60.3
Os03g0391000 Oryza sativa ssp. japonica HOM05D004013 ORTHO05D004710 9.7e-145 517.7 475 57.7
BcaC07g40539 Brassica carinata HOM05D004013 ORTHO05D004710 1.3e-144 517.3 402 63.7
BolC8t51099H Brassica oleracea HOM05D004013 ORTHO05D004710 6.3e-144 515.0 497 55.9
BcaB02g08917 Brassica carinata HOM05D004013 ORTHO05D004710 8.2e-144 514.6 496 55.6
BcaC02g12335 Brassica carinata HOM05D004013 ORTHO05D004710 1.1e-143 514.2 488 56.1
C04p05030 Brassica napus HOM05D004013 ORTHO05D004710 1.1e-143 514.2 488 56.1
BolC4t22136H Brassica oleracea HOM05D004013 ORTHO05D004710 1.1e-143 514.2 488 56.1
Zm00001eb065800 Zea mays HOM05D004013 ORTHO05D004710 1.6e-142 510.4 474 56.1
A05p04250 Brassica napus HOM05D004013 ORTHO05D004710 4.5e-142 508.8 489 55.8
BraA05t19410Z Brassica rapa HOM05D004013 ORTHO05D004710 5.9e-142 508.4 489 55.8
A09p52290 Brassica napus HOM05D004013 ORTHO05D004710 2.2e-141 506.5 515 53.4
Ah.13g073110 Amaranthus hybridus HOM05D004013 ORTHO05D004710 1.9e-140 503.4 397 63.5
Thhalv10001432m.g Eutrema salsugineum HOM05D004013 ORTHO05D004710 1.9e-140 503.4 406 60.6
Sed0011939 Sechium edule HOM05D004013 ORTHO05D004710 1.2e-139 500.7 337 73.9
ClCG06G010000 Citrullus lanatus HOM05D004013 ORTHO05D004710 2.7e-139 499.6 335 74.3
Oeu034368.2 Olea europaea HOM05D004013 ORTHO05D004710 2.2e-136 490.0 604 48.7
SEGI_37986 Sequoiadendron giganteum HOM05D004013 ORTHO05D004710 3.5e-134 482.6 482 54.1
Zm00001eb433950 Zea mays HOM05D004013 ORTHO05D004710 3.8e-133 479.2 374 63.1
unitig_748.g8760 Utricularia gibba HOM05D004013 ORTHO05D004710 5.5e-132 475.3 483 53.4
Peaxi162Scf00441g00621 Petunia axillaris HOM05D004013 ORTHO05D004710 1.0e-130 471.1 396 59.6
Pp3c11_22820 Physcomitrium patens HOM05D004013 ORTHO05D004710 1.8e-127 460.3 405 57.0
Sc08g0007990 Simmondsia chinensis HOM05D004013 ORTHO05D004710 5.9e-126 455.3 375 63.2
THA.LOC104808419 Tarenaya hassleriana HOM05D004013 ORTHO05D004710 1.3e-120 437.6 309 68.0
Pp3c7_280 Physcomitrium patens HOM05D004013 ORTHO05D004710 2.0e-118 430.3 404 52.5
Mapoly0153s0038 Marchantia polymorpha HOM05D004013 ORTHO05D004710 1.2e-115 421.0 406 53.0
SMO145G0104 Selaginella moellendorffii HOM05D004013 ORTHO05D004710 1.2e-110 404.4 374 55.3
Oeu053147.1 Olea europaea HOM05D004013 ORTHO05D004710 7.3e-92 342.0 340 55.3
Actinidia29462 Actinidia chinensis HOM05D004013 ORTHO05D004710 2.1e-86 323.9 222 70.7
Sabra17G0005400 Salix brachista HOM05D004013 ORTHO05D004710 1.1e-84 318.2 282 62.1
Hma1.2p1_1910F.1_g307280 Hydrangea macrophylla HOM05D004013 ORTHO05D004710 9.9e-81 305.1 254 64.2
Actinidia29461 Actinidia chinensis HOM05D004013 ORTHO05D004710 2.9e-80 303.5 226 69.5
Zm00001eb419970 Zea mays HOM05D004013 ORTHO05D004710 3.5e-78 296.6 244 61.1
C08p34940 Brassica napus HOM05D004013 ORTHO05D004710 4.0e-74 283.1 222 61.7
Zm00001eb264230 Zea mays HOM05D004013 ORTHO05D004710 4.0e-66 256.5 238 55.9
CBR_g21952 Chara braunii HOM05D004013 ORTHO05D004710 1.6e-62 244.6 311 43.1
Actinidia36638 Actinidia chinensis HOM05D004013 ORTHO05D004710 3.0e-61 240.4 418 42.6
Oeu037862.1 Olea europaea HOM05D004013 ORTHO05D004710 5.1e-53 213.0 270 43.3
PRCOL_00001711 Prasinoderma coloniale HOM05D004013 ORTHO05D004710 1.6e-46 191.4 436 32.6
unitig_32.g11897 Utricularia gibba HOM05D004013 ORTHO05D004710 3.2e-39 167.2 266 41.0
C08p34950 Brassica napus HOM05D004013 ORTHO05D004710 1.2e-38 165.2 140 61.4
THA.LOC104804900 Tarenaya hassleriana HOM05D004013 ORTHO05D004710 2.0e-33 147.9 165 50.3
Peaxi162Scf00271g00518 Petunia axillaris HOM05D004013 ORTHO05D004710 2.5e-31 141.0 118 57.6
Actinidia03474 Actinidia chinensis HOM05D004013 ORTHO05D004710 1.2e-30 138.7 136 54.4
MCO13G568 Micromonas commoda HOM05D004013 ORTHO05D004710 3.6e-30 137.1 286 31.8
ClCG06G009970 Citrullus lanatus HOM05D004013 ORTHO05D004710 8.2e-27 125.9 79 73.4
Cre12.g510100 Chlamydomonas reinhardtii HOM05D004013 ORTHO05D004710 5.3e-26 123.2 661 22.5
arahy.Tifrunner.gnm1.ann1.MVA4LE Arachis hypogaea HOM05D004013 ORTHO05D004710 1.0e-24 119.0 120 55.8
Actinidia03477 Actinidia chinensis HOM05D004013 ORTHO05D004710 9.4e-23 112.5 116 56.9
arahy.Tifrunner.gnm1.ann1.AC7664 Arachis hypogaea HOM05D004013 ORTHO05D004710 3.1e-18 97.4 108 51.9
Atru.chr3.2624 Acer truncatum HOM05D004013 ORTHO05D004710 4.1e-18 97.1 240 36.7
ATR0807G232 Amborella trichopoda HOM05D004013 ORTHO05D004710 4.8e-11 73.6 75 53.3
Cfa022146 Carpinus fangiana HOM05D004013 ORTHO05D124891 4.8e-11 73.6 347 24.8
ATR0807G053 Amborella trichopoda HOM05D004013 ORTHO05D004710 7.7e-09 66.2 47 61.7
CBR_g50173 Chara braunii HOM05D004013 ORTHO05D004710 3.8e-08 63.9 65 50.8


User provided reference genes

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