Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01003791001 Vitis vinifera HOM05D000530 ORTHO05D000621 1.9e-63 245.7 128 100.0
GSVIVG01024757001 Vitis vinifera HOM05D000530 ORTHO05D000621 6.5e-16 87.8 57 80.7
Actinidia36240 Actinidia chinensis HOM05D000530 ORTHO05D000621 6.1e-14 81.3 53 73.6
MBI07_g36279_MAGBIO Magnolia biondii HOM05D000530 ORTHO05D000621 6.1e-14 81.3 57 66.7
Prupe.3G311800 Prunus persica HOM05D000530 ORTHO05D000621 8.0e-14 80.9 53 69.8
GSVIVG01031395001 Vitis vinifera HOM05D000530 ORTHO05D000621 8.0e-14 80.9 52 75.0
Thecc.04G044600 Theobroma cacao HOM05D000530 ORTHO05D000621 1.4e-13 80.1 57 68.4
CSS0004040 Camellia sinensis var. sinensis HOM05D000530 ORTHO05D000621 1.8e-13 79.7 53 73.6
Dinv33293 Davidia involucrata HOM05D000530 ORTHO05D000621 1.8e-13 79.7 54 74.1
Duzib264G0469 Durio zibethinus HOM05D000530 ORTHO05D000621 2.3e-13 79.3 57 68.4
Lj1g0006513 Lotus japonicus HOM05D000530 ORTHO05D000621 2.3e-13 79.3 54 66.7
Dinv25623 Davidia involucrata HOM05D000530 ORTHO05D000621 3.0e-13 79.0 57 68.4
Duzib187G0598 Durio zibethinus HOM05D000530 ORTHO05D000621 3.0e-13 79.0 57 66.7
GSVIVG01033011001 Vitis vinifera HOM05D000530 ORTHO05D000621 4.0e-13 78.6 68 61.8
Glyma.19G100200 Glycine max HOM05D000530 ORTHO05D000621 6.8e-13 77.8 60 61.7
COL.COLO4_13340 Corchorus olitorius HOM05D000530 ORTHO05D000621 1.2e-12 77.0 57 64.9
TAR622G0077 Trochodendron aralioides HOM05D000530 ORTHO05D000621 1.2e-12 77.0 54 70.4
Gohir.A11G063300 Gossypium hirsutum HOM05D000530 ORTHO05D000621 1.5e-12 76.6 57 64.9
Gohir.D11G067000 Gossypium hirsutum HOM05D000530 ORTHO05D000621 1.5e-12 76.6 57 64.9
Gorai.007G072400 Gossypium raimondii HOM05D000530 ORTHO05D000621 1.5e-12 76.6 57 64.9
Rhsim10G0002100 Rhododendron simsii HOM05D000530 ORTHO05D000621 1.5e-12 76.6 54 68.5
Migut.K01481 Erythranthe guttata HOM05D000530 ORTHO05D000621 2.0e-12 76.3 55 67.3
Cpa.g.sc70.88 Carica papaya HOM05D000530 ORTHO05D000621 2.6e-12 75.9 57 61.4
CiPaw.04G002200 Carya illinoinensis HOM05D000530 ORTHO05D000621 2.6e-12 75.9 54 68.5
vmacro22237 Vaccinium macrocarpon HOM05D000530 ORTHO05D000621 2.6e-12 75.9 55 67.3
Atru.chr6.2632 Acer truncatum HOM05D000530 ORTHO05D000621 3.4e-12 75.5 68 55.9
PGR083G2132 Punica granatum HOM05D000530 ORTHO05D000621 3.4e-12 75.5 54 66.7
Gohir.A07G230600 Gossypium hirsutum HOM05D000530 ORTHO05D000621 4.4e-12 75.1 57 63.2
Gohir.D07G237900 Gossypium hirsutum HOM05D000530 ORTHO05D000621 4.4e-12 75.1 57 63.2
Gorai.001G273700 Gossypium raimondii HOM05D000530 ORTHO05D000621 4.4e-12 75.1 57 63.2
Lj7A615T37 Lonicera japonica HOM05D000530 ORTHO05D000621 4.4e-12 75.1 54 66.7
TPR.G5747 Trifolium pratense HOM05D000530 ORTHO05D000621 4.4e-12 75.1 61 59.0
Ca_08119_v3 Cicer arietinum L. HOM05D000530 ORTHO05D000621 5.7e-12 74.7 61 60.7
Phvul.001G087000 Phaseolus vulgaris HOM05D000530 ORTHO05D000621 5.7e-12 74.7 71 53.5
Potri.001G323100 Populus trichocarpa HOM05D000530 ORTHO05D000621 5.7e-12 74.7 51 72.5
Eucgr.G01952 Eucalyptus grandis HOM05D000530 ORTHO05D000621 7.5e-12 74.3 68 58.8
GSVIVG01024477001 Vitis vinifera HOM05D000530 ORTHO05D000621 9.8e-12 73.9 44 77.3
Thhalv10003903m.g Eutrema salsugineum HOM05D000530 ORTHO05D000621 1.3e-11 73.6 53 66.0
FAN02G3374 Fragaria x ananassa HOM05D000530 ORTHO05D000621 1.3e-11 73.6 53 66.0
FAN05G2093 Fragaria x ananassa HOM05D000530 ORTHO05D000621 1.3e-11 73.6 53 66.0
Haze_14929 Corylus avellana HOM05D000530 ORTHO05D000621 1.7e-11 73.2 55 63.6
Hma1.2p1_0525F.1_g172780 Hydrangea macrophylla HOM05D000530 ORTHO05D000621 1.7e-11 73.2 53 67.9
MD17G1009000 Malus domestica HOM05D000530 ORTHO05D000621 1.7e-11 73.2 55 65.5
AL5G15690 Arabidopsis lyrata HOM05D000530 ORTHO05D000621 2.2e-11 72.8 53 66.0
AT3G26810 Arabidopsis thaliana HOM05D000530 ORTHO05D000621 2.2e-11 72.8 53 66.0
Carub.0005s0486 Capsella rubella HOM05D000530 ORTHO05D000621 2.2e-11 72.8 53 66.0
QL02p070041 Quercus lobata HOM05D000530 ORTHO05D000621 2.2e-11 72.8 57 64.9
Sp2g15950 Schrenkiella parvula HOM05D000530 ORTHO05D000621 2.2e-11 72.8 53 66.0
TAR374G1121 Trochodendron aralioides HOM05D000530 ORTHO05D000621 2.2e-11 72.8 53 69.8
BcaC03g17392 Brassica carinata HOM05D000530 ORTHO05D000621 2.8e-11 72.4 53 64.2
C02p53360 Brassica napus HOM05D000530 ORTHO05D000621 2.8e-11 72.4 53 64.2
BolC2t11410H Brassica oleracea HOM05D000530 ORTHO05D000621 2.8e-11 72.4 53 64.2
BraA02t08487Z Brassica rapa HOM05D000530 ORTHO05D000621 2.8e-11 72.4 53 64.2
CiPaw.03G003400 Carya illinoinensis HOM05D000530 ORTHO05D000621 2.8e-11 72.4 54 66.7
CDE09G0163 Ceratophyllum demersum HOM05D000530 ORTHO05D000621 2.8e-11 72.4 54 63.0
Duzib147G1531 Durio zibethinus HOM05D000530 ORTHO05D000621 2.8e-11 72.4 57 64.9
Migut.F00020 Erythranthe guttata HOM05D000530 ORTHO05D000621 3.7e-11 72.0 54 63.0
FAN09G0869 Fragaria x ananassa HOM05D000530 ORTHO05D000621 3.7e-11 72.0 53 64.2
SGA_v2.0_scaffold44G16945 Striga asiatica HOM05D000530 ORTHO05D000621 3.7e-11 72.0 54 61.1
CARHR147890 Cardamine hirsuta HOM05D000530 ORTHO05D000621 4.8e-11 71.6 53 64.2
CDE02G4287 Ceratophyllum demersum HOM05D000530 ORTHO05D000621 4.8e-11 71.6 54 63.0
DCAR_016627 Daucus carota HOM05D000530 ORTHO05D000621 4.8e-11 71.6 55 60.0
Cc07_g01170 Coffea canephora HOM05D000530 ORTHO05D000621 6.3e-11 71.2 80 46.2
Potri.017G061600 Populus trichocarpa HOM05D000530 ORTHO05D000621 6.3e-11 71.2 54 66.7
Sabra16G0205000 Salix brachista HOM05D000530 ORTHO05D000621 6.3e-11 71.2 90 50.0
VMungo1383G3183 Vigna mungo HOM05D000530 ORTHO05D000621 6.3e-11 71.2 107 42.1
ClCG05G012800 Citrullus lanatus HOM05D000530 ORTHO05D000621 8.3e-11 70.9 57 61.4
CsaV3_3G027660 Cucumis sativus L. HOM05D000530 ORTHO05D000621 8.3e-11 70.9 57 61.4
Manes.04G091500 Manihot esculenta HOM05D000530 ORTHO05D000621 8.3e-11 70.9 56 64.3
MSTRG.24118 Avicennia marina HOM05D000530 ORTHO05D000621 1.1e-10 70.5 60 58.3
EL10Ac6g13380 Beta vulgaris HOM05D000530 ORTHO05D000621 1.1e-10 70.5 68 54.4
A02p34800 Brassica napus HOM05D000530 ORTHO05D000621 1.1e-10 70.5 53 62.3
MD09G1005000 Malus domestica HOM05D000530 ORTHO05D000621 1.1e-10 70.5 55 61.8
Sabra17G0054600 Salix brachista HOM05D000530 ORTHO05D000621 1.1e-10 70.5 90 50.0
FvH4_6g54140 Fragaria vesca HOM05D000530 ORTHO05D000621 1.4e-10 70.1 53 62.3
FAN14G5536 Fragaria x ananassa HOM05D000530 ORTHO05D000621 1.4e-10 70.1 53 62.3
SGA_v2.0_scaffold253G45153 Striga asiatica HOM05D000530 ORTHO05D000621 1.4e-10 70.1 54 63.0
Cfa007181 Carpinus fangiana HOM05D000530 ORTHO05D000621 1.8e-10 69.7 54 63.0
Psat3g094360 Pisum sativum HOM05D000530 ORTHO05D000621 1.8e-10 69.7 57 57.9
MELO3C014799.2 Cucumis melo HOM05D000530 ORTHO05D000621 2.4e-10 69.3 57 59.6
Medtr7g083610 Medicago truncatula HOM05D000530 ORTHO05D000621 2.4e-10 69.3 58 62.1
Sed0024455 Sechium edule HOM05D000530 ORTHO05D000621 2.4e-10 69.3 55 61.8
AUR62037846 Chenopodium quinoa HOM05D000530 ORTHO05D000621 3.1e-10 68.9 54 61.1
AUR62041085 Chenopodium quinoa HOM05D000530 ORTHO05D000621 3.1e-10 68.9 54 61.1
SalBow4G3086 Salvia bowleyana HOM05D000530 ORTHO05D000621 3.1e-10 68.9 54 59.3
SGA_v2.0_scaffold47G17628 Striga asiatica HOM05D000530 ORTHO05D000621 3.1e-10 68.9 55 58.2
THA.LOC104805311 Tarenaya hassleriana HOM05D000530 ORTHO05D000621 3.1e-10 68.9 53 62.3
Sed0000454 Sechium edule HOM05D000530 ORTHO05D000621 4.1e-10 68.6 57 61.4
Hund12876 Selenicereus undatus HOM05D000530 ORTHO05D000621 4.1e-10 68.6 68 48.5
BcaB07g30208 Brassica carinata HOM05D000530 ORTHO05D000621 7.0e-10 67.8 52 61.5
Lalb_Chr14g0363901 Lupinus albus HOM05D000530 ORTHO05D000621 7.0e-10 67.8 57 57.9
TWI60G0927 Tripterygium wilfordii HOM05D000530 ORTHO05D000621 7.0e-10 67.8 57 63.2
Ciclev10014749m.g Citrus clementina HOM05D000530 ORTHO05D000621 9.1e-10 67.4 68 51.5
Glyma.02G065300 Glycine max HOM05D000530 ORTHO05D000621 9.1e-10 67.4 57 59.6
Glyma.16G050500 Glycine max HOM05D000530 ORTHO05D000621 1.2e-09 67.0 60 56.7
RcHm_v2.0_Chr2g0176311 Rosa chinensis HOM05D000530 ORTHO05D000621 2.0e-09 66.2 68 50.0
SGA_v2.0_scaffold34G13694 Striga asiatica HOM05D000530 ORTHO05D000621 2.0e-09 66.2 55 58.2
Manes.11G078600 Manihot esculenta HOM05D000530 ORTHO05D000621 2.7e-09 65.9 90 46.7
arahy.Tifrunner.gnm1.ann1.3X0QME Arachis hypogaea HOM05D000530 ORTHO05D000621 3.5e-09 65.5 57 56.1
arahy.Tifrunner.gnm1.ann1.Y9S2IA Arachis hypogaea HOM05D000530 ORTHO05D000621 3.5e-09 65.5 57 56.1
TWI32G0717 Tripterygium wilfordii HOM05D000530 ORTHO05D000621 3.5e-09 65.5 95 44.2
Aqoxy5G03207 Aquilegia oxysepala HOM05D000530 ORTHO05D000621 5.9e-09 64.7 59 54.2
THA.LOC104823994 Tarenaya hassleriana HOM05D000530 ORTHO05D000621 5.9e-09 64.7 53 56.6
BcaC07g40272 Brassica carinata HOM05D000530 ORTHO05D000621 7.7e-09 64.3 53 58.5
C08p33700 Brassica napus HOM05D000530 ORTHO05D000621 7.7e-09 64.3 53 58.5
CARHR013140 Cardamine hirsuta HOM05D000530 ORTHO05D000621 1.0e-08 63.9 53 60.4
AL1G24460 Arabidopsis lyrata HOM05D000530 ORTHO05D000621 1.3e-08 63.5 53 58.5
AT1G12820 Arabidopsis thaliana HOM05D000530 ORTHO05D000621 1.3e-08 63.5 53 58.5
BcaC07g41678 Brassica carinata HOM05D000530 ORTHO05D000621 1.3e-08 63.5 57 54.4
A09p63600 Brassica napus HOM05D000530 ORTHO05D000621 1.3e-08 63.5 57 54.4
C08p47100 Brassica napus HOM05D000530 ORTHO05D000621 1.3e-08 63.5 57 54.4
BolC8t50970H Brassica oleracea HOM05D000530 ORTHO05D000621 1.3e-08 63.5 57 54.4
BolC8t52249H Brassica oleracea HOM05D000530 ORTHO05D000621 1.3e-08 63.5 57 54.4
BraA09t41710Z Brassica rapa HOM05D000530 ORTHO05D000621 1.3e-08 63.5 57 54.4
PSO229G0012 Papaver somniferum HOM05D000530 ORTHO05D000621 1.3e-08 63.5 51 64.7
SEGI_07535 Sequoiadendron giganteum HOM05D000530 ORTHO05D000621 1.3e-08 63.5 68 47.1
Carub.0001s1256 Capsella rubella HOM05D000530 ORTHO05D000621 3.8e-08 62.0 53 58.5
Glyma.16G146400 Glycine max HOM05D000530 ORTHO05D000621 3.8e-08 62.0 57 54.4
Oeu045585.1 Olea europaea HOM05D000530 ORTHO05D000621 3.8e-08 62.0 67 52.2
Sc07g0003680 Simmondsia chinensis HOM05D000530 ORTHO05D000621 5.0e-08 61.6 67 44.8
Thhalv10007195m.g Eutrema salsugineum HOM05D000530 ORTHO05D000621 6.5e-08 61.2 52 57.7
ATR0582G116 Amborella trichopoda HOM05D000530 ORTHO05D000621 8.5e-08 60.8 58 58.6
QL11p016097 Quercus lobata HOM05D000530 ORTHO05D000621 8.5e-08 60.8 57 59.6
BcaB08g34249 Brassica carinata HOM05D000530 ORTHO05D000621 1.1e-07 60.5 57 49.1
Sp1g11390 Schrenkiella parvula HOM05D000530 ORTHO05D000621 1.1e-07 60.5 56 53.6
SEGI_29062 Sequoiadendron giganteum HOM05D000530 ORTHO05D000621 1.5e-07 60.1 58 55.2
Os04g0395600 Oryza sativa ssp. japonica HOM05D000530 ORTHO05D000621 1.9e-07 59.7 70 41.4
BcaB03g13165 Brassica carinata HOM05D000530 ORTHO05D000621 3.2e-07 58.9 57 45.6
Oeu039788.1 Olea europaea HOM05D000530 ORTHO05D000621 4.2e-07 58.5 68 45.6
C08p15670 Brassica napus HOM05D000530 ORTHO05D000621 5.5e-07 58.2 62 50.0
BolC8t49194H Brassica oleracea HOM05D000530 ORTHO05D000621 5.5e-07 58.2 62 50.0
Oeu013477.1 Olea europaea HOM05D000530 ORTHO05D000621 7.2e-07 57.8 68 47.1
AUR62005029 Chenopodium quinoa HOM05D000530 ORTHO05D000621 9.4e-07 57.4 70 42.9
Zm00001eb085030 Zea mays HOM05D000530 ORTHO05D000621 9.4e-07 57.4 70 38.6
Zm00001eb421340 Zea mays HOM05D000530 ORTHO05D000621 9.4e-07 57.4 57 47.4
A08p32610 Brassica napus HOM05D000530 ORTHO05D000621 1.6e-06 56.6 57 45.6
BraA08t35185Z Brassica rapa HOM05D000530 ORTHO05D000621 1.6e-06 56.6 57 45.6
GSVIVG01000962001 Vitis vinifera HOM05D000530 ORTHO05D000621 1.6e-06 56.6 54 48.1
Sc16g0008180 Simmondsia chinensis HOM05D000530 ORTHO05D000621 2.1e-06 56.2 54 50.0
CiPaw.08G053600 Carya illinoinensis HOM05D000530 ORTHO05D000621 2.7e-06 55.8 57 47.4
AUR62000938 Chenopodium quinoa HOM05D000530 ORTHO05D000621 2.7e-06 55.8 84 36.9
Glyma.02G152800 Glycine max HOM05D000530 ORTHO05D000621 3.6e-06 55.5 57 49.1
Glyma.10G021500 Glycine max HOM05D000530 ORTHO05D000621 3.6e-06 55.5 57 49.1
Hund21663 Selenicereus undatus HOM05D000530 ORTHO05D000621 3.6e-06 55.5 75 40.0
BcaB02g07305 Brassica carinata HOM05D000530 ORTHO05D000621 4.7e-06 55.1 73 39.7
PSO478G5106 Papaver somniferum HOM05D000530 ORTHO05D000621 4.7e-06 55.1 68 45.6
VMungo0720G1608 Vigna mungo HOM05D000530 ORTHO05D000621 4.7e-06 55.1 57 47.4
EL10Ac4g09234 Beta vulgaris HOM05D000530 ORTHO05D000621 6.1e-06 54.7 84 36.9
Hund07008 Selenicereus undatus HOM05D000530 ORTHO05D000621 6.1e-06 54.7 71 40.8
PSO017G6168 Papaver somniferum HOM05D000530 ORTHO05D000621 8.0e-06 54.3 68 45.6


User provided reference genes

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