Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01002328001 Vitis vinifera HOM05D001716 ORTHO05D005286 4.2e-30 134.0 67 100.0
arahy.Tifrunner.gnm1.ann1.PJ5Q5S Arachis hypogaea HOM05D001716 ORTHO05D005286 2.3e-20 101.7 53 96.2
arahy.Tifrunner.gnm1.ann1.TSR8I7 Arachis hypogaea HOM05D001716 ORTHO05D005286 2.3e-20 101.7 53 96.2
Manes.12G116100 Manihot esculenta HOM05D001716 ORTHO05D005286 2.3e-20 101.7 53 96.2
Manes.13G110200 Manihot esculenta HOM05D001716 ORTHO05D005286 2.3e-20 101.7 53 96.2
DCAR_025814 Daucus carota HOM05D001716 ORTHO05D005286 3.0e-20 101.3 53 96.2
Dinv26947 Davidia involucrata HOM05D001716 ORTHO05D005286 3.0e-20 101.3 53 94.3
Lj7P109T40 Lonicera japonica HOM05D001716 ORTHO05D005286 3.9e-20 100.9 53 96.2
ClCG01G017700 Citrullus lanatus HOM05D001716 ORTHO05D005286 5.1e-20 100.5 53 94.3
MELO3C007648.2 Cucumis melo HOM05D001716 ORTHO05D005286 5.1e-20 100.5 53 94.3
CsaV3_6G044230 Cucumis sativus L. HOM05D001716 ORTHO05D005286 5.1e-20 100.5 53 94.3
Potri.006G118900 Populus trichocarpa HOM05D001716 ORTHO05D005286 5.1e-20 100.5 53 94.3
Potri.016G096800 Populus trichocarpa HOM05D001716 ORTHO05D005286 5.1e-20 100.5 53 94.3
Sabra06G0093500 Salix brachista HOM05D001716 ORTHO05D005286 5.1e-20 100.5 53 94.3
Cpa.g.c26343.1 Carica papaya HOM05D001716 ORTHO05D005286 6.7e-20 100.1 53 94.3
Phvul.006G062800 Phaseolus vulgaris HOM05D001716 ORTHO05D005286 6.7e-20 100.1 53 92.5
VMungo0540G0749 Vigna mungo HOM05D001716 ORTHO05D005286 6.7e-20 100.1 53 92.5
BcaB02g09910 Brassica carinata HOM05D001716 ORTHO05D005286 8.7e-20 99.8 53 92.5
CSS0031097 Camellia sinensis var. sinensis HOM05D001716 ORTHO05D005286 8.7e-20 99.8 53 92.5
TAR381G1690 Trochodendron aralioides HOM05D001716 ORTHO05D005286 8.7e-20 99.8 53 94.3
AL8G43670 Arabidopsis lyrata HOM05D001716 ORTHO05D005286 1.5e-19 99.0 53 92.5
AT5G67630 Arabidopsis thaliana HOM05D001716 ORTHO05D005286 1.5e-19 99.0 53 92.5
CARHR279960 Cardamine hirsuta HOM05D001716 ORTHO05D005286 1.5e-19 99.0 53 92.5
Thhalv10004147m.g Eutrema salsugineum HOM05D001716 ORTHO05D005286 1.5e-19 99.0 53 92.5
Glyma.08G335300 Glycine max HOM05D001716 ORTHO05D005286 1.5e-19 99.0 53 90.6
Glyma.18G070300 Glycine max HOM05D001716 ORTHO05D005286 1.5e-19 99.0 53 90.6
Rhsim10G0097300 Rhododendron simsii HOM05D001716 ORTHO05D005286 1.5e-19 99.0 53 92.5
RhsimUnG0241600 Rhododendron simsii HOM05D001716 ORTHO05D005286 1.5e-19 99.0 53 92.5
Sp2g29020 Schrenkiella parvula HOM05D001716 ORTHO05D005286 1.5e-19 99.0 53 92.5
Haze_15267 Corylus avellana HOM05D001716 ORTHO05D005286 1.9e-19 98.6 53 92.5
Dinv23031 Davidia involucrata HOM05D001716 ORTHO05D005286 2.5e-19 98.2 53 90.6
Duzib264G0207 Durio zibethinus HOM05D001716 ORTHO05D005286 2.5e-19 98.2 53 92.5
Hma1.2p1_1662F.1_g296260 Hydrangea macrophylla HOM05D001716 ORTHO05D005286 2.5e-19 98.2 53 92.5
A06p32790 Brassica napus HOM05D001716 ORTHO05D005286 3.3e-19 97.8 53 90.6
C03p59680 Brassica napus HOM05D001716 ORTHO05D005286 3.3e-19 97.8 53 90.6
BolC3t18230H Brassica oleracea HOM05D001716 ORTHO05D005286 3.3e-19 97.8 53 90.6
BraA06t26211Z Brassica rapa HOM05D001716 ORTHO05D005286 3.3e-19 97.8 53 90.6
COL.COLO4_11594 Corchorus olitorius HOM05D001716 ORTHO05D005286 3.3e-19 97.8 53 92.5
Duzib187G1319 Durio zibethinus HOM05D001716 ORTHO05D005286 3.3e-19 97.8 53 92.5
Lalb_Chr15g0082591 Lupinus albus HOM05D001716 ORTHO05D005286 3.3e-19 97.8 53 92.5
Lalb_Chr18g0050591 Lupinus albus HOM05D001716 ORTHO05D005286 3.3e-19 97.8 53 92.5
Nn5g30630 Nelumbo nucifera HOM05D001716 ORTHO05D005286 3.3e-19 97.8 53 92.5
Carub.0008s2684 Capsella rubella HOM05D001716 ORTHO05D005286 4.3e-19 97.4 53 90.6
MD02G1184700 Malus domestica HOM05D001716 ORTHO05D005286 4.3e-19 97.4 53 94.3
Prupe.1G544700 Prunus persica HOM05D001716 ORTHO05D005286 4.3e-19 97.4 53 94.3
Sed0022589 Sechium edule HOM05D001716 ORTHO05D005286 4.3e-19 97.4 53 92.5
Actinidia11972 Actinidia chinensis HOM05D001716 ORTHO05D005286 5.6e-19 97.1 53 90.6
CANSAT01G2893 Cannabis sativa HOM05D001716 ORTHO05D005286 5.6e-19 97.1 53 90.6
CiPaw.02G001700 Carya illinoinensis HOM05D001716 ORTHO05D005286 5.6e-19 97.1 53 90.6
Cc07_g07250 Coffea canephora HOM05D001716 ORTHO05D005286 5.6e-19 97.1 53 92.5
Lj6g0016700 Lotus japonicus HOM05D001716 ORTHO05D005286 5.6e-19 97.1 53 90.6
QL06p039377 Quercus lobata HOM05D001716 ORTHO05D005286 5.6e-19 97.1 53 90.6
TAR628G0067 Trochodendron aralioides HOM05D001716 ORTHO05D005286 5.6e-19 97.1 53 92.5
MSTRG.23660 Avicennia marina HOM05D001716 ORTHO05D005286 7.4e-19 96.7 53 90.6
HanXRQChr12g0355061 Helianthus annuus HOM05D001716 ORTHO05D005286 7.4e-19 96.7 53 90.6
HanXRQChr15g0492541 Helianthus annuus HOM05D001716 ORTHO05D005286 7.4e-19 96.7 53 90.6
Lsat_1_v5_gn_9_41920 Lactuca sativa HOM05D001716 ORTHO05D005286 7.4e-19 96.7 53 88.7
Medtr3g061640 Medicago truncatula HOM05D001716 ORTHO05D005286 7.4e-19 96.7 53 88.7
PSO017G1956 Papaver somniferum HOM05D001716 ORTHO05D005286 7.4e-19 96.7 53 92.5
THA.LOC104811581 Tarenaya hassleriana HOM05D001716 ORTHO05D005286 7.4e-19 96.7 53 88.7
FvH4_1g17590 Fragaria vesca HOM05D001716 ORTHO05D005286 9.6e-19 96.3 53 92.5
FAN19G0905 Fragaria x ananassa HOM05D001716 ORTHO05D005286 9.6e-19 96.3 53 92.5
FAN23G1487 Fragaria x ananassa HOM05D001716 ORTHO05D005286 9.6e-19 96.3 53 92.5
FAN26G1334 Fragaria x ananassa HOM05D001716 ORTHO05D005286 9.6e-19 96.3 53 92.5
FAN28G0338 Fragaria x ananassa HOM05D001716 ORTHO05D005286 9.6e-19 96.3 53 92.5
RcHm_v2.0_Chr2g0107901 Rosa chinensis HOM05D001716 ORTHO05D005286 9.6e-19 96.3 53 92.5
Aqoxy3G00404 Aquilegia oxysepala HOM05D001716 ORTHO05D005286 1.3e-18 95.9 53 90.6
Gohir.A11G213500 Gossypium hirsutum HOM05D001716 ORTHO05D005286 1.3e-18 95.9 53 90.6
Gohir.D11G209700 Gossypium hirsutum HOM05D001716 ORTHO05D005286 1.3e-18 95.9 53 90.6
Gorai.007G224900 Gossypium raimondii HOM05D001716 ORTHO05D005286 1.3e-18 95.9 53 90.6
Ca_14882_v3 Cicer arietinum L. HOM05D001716 ORTHO05D005286 1.6e-18 95.5 53 88.7
Peaxi162Scf00155g00315 Petunia axillaris HOM05D001716 ORTHO05D005286 1.6e-18 95.5 53 86.8
Psat3g073800 Pisum sativum HOM05D001716 ORTHO05D005286 1.6e-18 95.5 53 88.7
AT3G49830 Arabidopsis thaliana HOM05D001716 ORTHO05D005286 2.1e-18 95.1 53 88.7
CDE12G0541 Ceratophyllum demersum HOM05D001716 ORTHO05D005286 2.1e-18 95.1 53 90.6
Eucgr.I00692 Eucalyptus grandis HOM05D001716 ORTHO05D005286 2.1e-18 95.1 53 88.7
Atru.chr3.1032 Acer truncatum HOM05D001716 ORTHO05D005286 2.8e-18 94.7 53 88.7
Oeu011981.1 Olea europaea HOM05D001716 ORTHO05D005286 2.8e-18 94.7 53 88.7
Thecc.01G074300 Theobroma cacao HOM05D001716 ORTHO05D005286 2.8e-18 94.7 53 90.6
TWI74G0064 Tripterygium wilfordii HOM05D001716 ORTHO05D005286 2.8e-18 94.7 53 88.7
Gohir.A03G065400 Gossypium hirsutum HOM05D001716 ORTHO05D005286 3.6e-18 94.4 53 88.7
Gohir.D03G091700 Gossypium hirsutum HOM05D001716 ORTHO05D005286 3.6e-18 94.4 53 88.7
Gorai.003G095100 Gossypium raimondii HOM05D001716 ORTHO05D005286 3.6e-18 94.4 53 88.7
TPR.G30127 Trifolium pratense HOM05D001716 ORTHO05D005286 3.6e-18 94.4 53 86.8
Sc03g0002460 Simmondsia chinensis HOM05D001716 ORTHO05D005286 4.8e-18 94.0 53 86.8
CDE01G0010 Ceratophyllum demersum HOM05D001716 ORTHO05D005286 6.2e-18 93.6 53 88.7
Migut.H00335 Erythranthe guttata HOM05D001716 ORTHO05D005286 6.2e-18 93.6 53 88.7
Nitab4.5_0000076g0030 Nicotiana tabacum HOM05D001716 ORTHO05D005286 6.2e-18 93.6 53 86.8
Nitab4.5_0001502g0030 Nicotiana tabacum HOM05D001716 ORTHO05D005286 6.2e-18 93.6 53 86.8
SGA_v2.0_scaffold34G13838 Striga asiatica HOM05D001716 ORTHO05D005286 6.2e-18 93.6 53 88.7
EL10Ac6g15607 Beta vulgaris HOM05D001716 ORTHO05D005286 8.1e-18 93.2 53 86.8
Oeu032428.1 Olea europaea HOM05D001716 ORTHO05D005286 8.1e-18 93.2 53 86.8
Hund16410 Selenicereus undatus HOM05D001716 ORTHO05D005286 8.1e-18 93.2 53 86.8
TWI39G0842 Tripterygium wilfordii HOM05D001716 ORTHO05D005286 8.1e-18 93.2 53 86.8
CSS0020198 Camellia sinensis var. sinensis HOM05D001716 ORTHO05D005286 1.1e-17 92.8 53 84.9
MSTRG.3477 Avicennia marina HOM05D001716 ORTHO05D005286 1.4e-17 92.4 53 86.8
Ciclev10025549m.g Citrus clementina HOM05D001716 ORTHO05D005286 1.8e-17 92.0 53 88.7
Psat5g162960 Pisum sativum HOM05D001716 ORTHO05D005286 1.8e-17 92.0 53 83.0
PGR004G2469 Punica granatum HOM05D001716 ORTHO05D005286 1.8e-17 92.0 54 87.0
AUR62019612 Chenopodium quinoa HOM05D001716 ORTHO05D005286 2.4e-17 91.7 53 84.9
unitig_52.g17605 Utricularia gibba HOM05D001716 ORTHO05D005286 3.1e-17 91.3 59 79.7
Ah.13g075570 Amaranthus hybridus HOM05D001716 ORTHO05D005286 4.0e-17 90.9 53 84.9
AUR62037589 Chenopodium quinoa HOM05D001716 ORTHO05D005286 4.0e-17 90.9 53 83.0
ECA232G0678 Erigeron canadensis HOM05D001716 ORTHO05D005286 4.0e-17 90.9 54 87.0
SEGI_13567 Sequoiadendron giganteum HOM05D001716 ORTHO05D005286 5.3e-17 90.5 53 84.9
CAN.G354.11 Capsicum annuum HOM05D001716 ORTHO05D005286 9.0e-17 89.7 53 83.0
SEGI_14920 Sequoiadendron giganteum HOM05D001716 ORTHO05D005286 9.0e-17 89.7 53 83.0
PGSC0003DMG400018681 Solanum tuberosum HOM05D001716 ORTHO05D005286 1.2e-16 89.4 57 77.2
Solyc03g032070.3 Solanum lycopersicum HOM05D001716 ORTHO05D005286 1.5e-16 89.0 53 83.0
Sopen03g005920 Solanum pennellii HOM05D001716 ORTHO05D005286 1.5e-16 89.0 53 83.0
ATR0824G271 Amborella trichopoda HOM05D001716 ORTHO05D005286 2.0e-16 88.6 53 83.0
Carub.0005s1618 Capsella rubella HOM05D001716 ORTHO05D005286 2.0e-16 88.6 53 81.1
HPP92_019986 Vanilla planifolia HOM05D001716 ORTHO05D005286 4.5e-16 87.4 55 83.6
Thhalv10010952m.g Eutrema salsugineum HOM05D001716 ORTHO05D005286 9.9e-16 86.3 48 85.4
CARHR158900 Cardamine hirsuta HOM05D001716 ORTHO05D005286 2.9e-15 84.7 53 77.4
Os06g0186900 Oryza sativa ssp. japonica HOM05D001716 ORTHO05D005286 2.9e-15 84.7 54 83.3
SMO356G0332 Selaginella moellendorffii HOM05D001716 ORTHO05D005286 4.9e-15 84.0 52 76.9
Zm00001eb107710 Zea mays HOM05D001716 ORTHO05D005286 4.9e-15 84.0 54 81.5
Zm00001eb325580 Zea mays HOM05D001716 ORTHO05D005286 1.1e-14 82.8 54 79.6
Pp3c14_1470 Physcomitrium patens HOM05D001716 ORTHO05D005286 1.4e-14 82.4 54 72.2
Mapoly0016s0079 Marchantia polymorpha HOM05D001716 ORTHO05D005286 3.2e-14 81.3 53 75.5
MCO12G434 Micromonas commoda HOM05D001716 ORTHO05D005286 5.5e-14 80.5 59 72.9
Cre10.g442700 Chlamydomonas reinhardtii HOM05D001716 ORTHO05D005286 7.1e-14 80.1 53 77.4
Mapoly0059s0092 Marchantia polymorpha HOM05D001716 ORTHO05D005286 2.7e-13 78.2 53 69.8
HPP92_008803 Vanilla planifolia HOM05D001716 ORTHO05D005286 3.5e-13 77.8 49 79.6
AagrBONN_evm.TU.Sc2ySwM_362.2421 Anthoceros agrestis HOM05D001716 ORTHO05D005286 6.0e-13 77.0 55 74.5
Pp3c16_8750 Physcomitrium patens HOM05D004962 ORTHO05D005286 7.9e-13 76.6 54 66.7
AagrBONN_evm.TU.Sc2ySwM_228.3163 Anthoceros agrestis HOM05D001716 ORTHO05D005286 1.3e-12 75.9 54 72.2
Haze_26491 Corylus avellana HOM05D001716 ORTHO05D005286 1.7e-07 58.9 44 61.4


User provided reference genes

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