Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01001528001 Vitis vinifera HOM05D004953 ORTHO05D006193 0.0e+00 1655.6 849 100.0
Dinv28790 Davidia involucrata HOM05D004953 ORTHO05D006193 0.0e+00 1210.7 846 72.3
CSS0005222 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 0.0e+00 1188.3 844 72.0
CSS0012001 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 0.0e+00 1188.3 844 72.0
RcHm_v2.0_Chr6g0282191 Rosa chinensis HOM05D004953 ORTHO05D006193 0.0e+00 1167.1 854 69.8
FAN27G2958 Fragaria x ananassa HOM05D004953 ORTHO05D006193 0.0e+00 1153.7 852 69.4
Lj2C1111T4 Lonicera japonica HOM05D004953 ORTHO05D006193 0.0e+00 1149.8 845 69.2
FAN24G2388 Fragaria x ananassa HOM05D004953 ORTHO05D006193 0.0e+00 1147.1 852 69.2
FvH4_2g17460 Fragaria vesca HOM05D004953 ORTHO05D006193 0.0e+00 1146.7 852 69.2
Rhsim13G0055000 Rhododendron simsii HOM05D004953 ORTHO05D006193 0.0e+00 1146.0 849 69.0
FAN15G1962 Fragaria x ananassa HOM05D004953 ORTHO05D006193 0.0e+00 1131.3 853 68.5
vmacro02841 Vaccinium macrocarpon HOM05D004953 ORTHO05D006193 0.0e+00 1129.8 870 67.6
MD05G1153500 Malus domestica HOM05D004953 ORTHO05D006193 0.0e+00 1114.4 857 67.1
Duzib133G0915 Durio zibethinus HOM05D004953 ORTHO05D006193 0.0e+00 1113.6 861 66.1
COL.COLO4_34276 Corchorus olitorius HOM05D004953 ORTHO05D006193 0.0e+00 1112.4 861 66.1
Thecc.01G207300 Theobroma cacao HOM05D004953 ORTHO05D006193 0.0e+00 1112.1 862 66.6
Haze_03508 Corylus avellana HOM05D004953 ORTHO05D006193 0.0e+00 1110.9 852 68.1
Lj1g0025378 Lotus japonicus HOM05D004953 ORTHO05D006193 0.0e+00 1110.5 853 66.7
Prupe.8G186900 Prunus persica HOM05D004953 ORTHO05D006193 0.0e+00 1110.1 854 67.4
Manes.13G056300 Manihot esculenta HOM05D004953 ORTHO05D006193 0.0e+00 1108.2 858 66.4
Cfa010574 Carpinus fangiana HOM05D004953 ORTHO05D006193 0.0e+00 1104.4 852 67.3
Sabra14G0134100 Salix brachista HOM05D004953 ORTHO05D006193 0.0e+00 1101.3 864 66.4
Ca_08034_v3 Cicer arietinum L. HOM05D004953 ORTHO05D006193 0.0e+00 1095.5 855 65.6
Cpa.g.sc8.38 Carica papaya HOM05D004953 ORTHO05D006193 0.0e+00 1091.3 864 65.3
TWI36G1252 Tripterygium wilfordii HOM05D004953 ORTHO05D006193 0.0e+00 1089.7 863 65.2
Potri.014G175350 Populus trichocarpa HOM05D004953 ORTHO05D006193 0.0e+00 1088.2 869 65.2
Nn1g09452 Nelumbo nucifera HOM05D004953 ORTHO05D006193 0.0e+00 1087.4 848 65.4
CiPaw.13G055800 Carya illinoinensis HOM05D004953 ORTHO05D006193 0.0e+00 1086.6 854 67.3
CANSAT01G2219 Cannabis sativa HOM05D004953 ORTHO05D006193 0.0e+00 1085.1 863 65.4
Medtr7g080880 Medicago truncatula HOM05D004953 ORTHO05D006193 0.0e+00 1081.2 851 65.7
VMungo1383G3652 Vigna mungo HOM05D004953 ORTHO05D006193 0.0e+00 1080.5 849 64.3
Cc01_g15850 Coffea canephora HOM05D004953 ORTHO05D006193 0.0e+00 1078.5 856 64.7
Gorai.007G161300 Gossypium raimondii HOM05D004953 ORTHO05D006193 5.8e-312 1074.3 862 64.5
Glyma.18G246600 Glycine max HOM05D004953 ORTHO05D006193 4.4e-310 1067.8 850 64.6
Oeu013420.1 Olea europaea HOM05D004953 ORTHO05D006193 4.1e-308 1061.2 856 63.6
QL09p045412 Quercus lobata HOM05D004953 ORTHO05D006193 2.7e-307 1058.5 899 63.6
THA.LOC104819011 Tarenaya hassleriana HOM05D004953 ORTHO05D006193 4.5e-307 1057.7 859 62.0
TPR.G35843 Trifolium pratense HOM05D004953 ORTHO05D006193 1.5e-305 1052.7 861 64.3
Migut.D00772 Erythranthe guttata HOM05D004953 ORTHO05D006193 1.4e-303 1046.2 853 63.3
Nitab4.5_0008926g0010 Nicotiana tabacum HOM05D004953 ORTHO05D006193 6.8e-303 1043.9 845 62.8
Ciclev10018269m.g Citrus clementina HOM05D004953 ORTHO05D006193 2.0e-302 1042.3 856 64.7
Eucgr.K00106 Eucalyptus grandis HOM05D004953 ORTHO05D006193 2.0e-302 1042.3 864 62.4
Peaxi162Scf02239g00020 Petunia axillaris HOM05D004953 ORTHO05D006193 6.0e-299 1030.8 847 61.4
Thhalv10005371m.g Eutrema salsugineum HOM05D004953 ORTHO05D006193 7.8e-299 1030.4 858 61.3
HanXRQChr12g0363951 Helianthus annuus HOM05D004953 ORTHO05D006193 1.3e-298 1029.6 847 62.5
Atru.BG.40.p Acer truncatum HOM05D004953 ORTHO05D006193 2.3e-298 1028.9 856 64.8
Nitab4.5_0000038g0380 Nicotiana tabacum HOM05D004953 ORTHO05D006193 3.0e-298 1028.5 849 62.1
PGSC0003DMG400021911 Solanum tuberosum HOM05D004953 ORTHO05D006193 1.5e-297 1026.2 848 63.0
Hund02809 Selenicereus undatus HOM05D004953 ORTHO05D006193 2.5e-297 1025.4 848 62.5
Lsat_1_v5_gn_8_98501 Lactuca sativa HOM05D004953 ORTHO05D006193 1.6e-296 1022.7 847 61.7
CAN.G1468.3 Capsicum annuum HOM05D004953 ORTHO05D006193 2.8e-296 1021.9 845 63.0
AT5G48390 Arabidopsis thaliana HOM05D004953 ORTHO05D006193 3.6e-296 1021.5 855 61.9
AL8G21200 Arabidopsis lyrata HOM05D004953 ORTHO05D006193 2.3e-295 1018.8 856 61.7
Solyc09g042760.2 Solanum lycopersicum HOM05D004953 ORTHO05D006193 7.5e-294 1013.8 846 62.1
EL10Ac5g10584 Beta vulgaris HOM05D004953 ORTHO05D006193 9.8e-294 1013.4 857 62.0
Carub.0008s0798 Capsella rubella HOM05D004953 ORTHO05D006193 2.2e-293 1012.3 855 60.9
SalBow3G1227 Salvia bowleyana HOM05D004953 ORTHO05D006193 8.3e-293 1010.4 847 61.3
Phvul.008G050500 Phaseolus vulgaris HOM05D004953 ORTHO05D006193 3.2e-292 1008.4 804 63.6
CARHR183800 Cardamine hirsuta HOM05D004953 ORTHO05D006193 9.2e-292 1006.9 855 60.9
arahy.Tifrunner.gnm1.ann1.57Z9Z9 Arachis hypogaea HOM05D004953 ORTHO05D006193 6.6e-290 1000.7 917 59.2
AUR62028642 Chenopodium quinoa HOM05D004953 ORTHO05D006193 6.6e-290 1000.7 852 61.6
SHI10219 Sapria himalayana HOM05D004953 ORTHO05D006193 6.6e-290 1000.7 877 59.9
Sc17g0001570 Simmondsia chinensis HOM05D004953 ORTHO05D006193 2.5e-289 998.8 859 61.6
Sopen09g015810 Solanum pennellii HOM05D004953 ORTHO05D006193 4.3e-289 998.0 846 61.7
Psat3g100880 Pisum sativum HOM05D004953 ORTHO05D006193 5.6e-289 997.7 853 61.8
C07p39140 Brassica napus HOM05D004953 ORTHO05D006193 2.1e-288 995.7 849 59.8
BolC7t44434H Brassica oleracea HOM05D004953 ORTHO05D006193 2.1e-288 995.7 849 59.8
A06p39200 Brassica napus HOM05D004953 ORTHO05D006193 6.2e-288 994.2 849 60.0
Sp2g18750 Schrenkiella parvula HOM05D004953 ORTHO05D006193 8.1e-288 993.8 858 59.9
Sed0024263 Sechium edule HOM05D004953 ORTHO05D006193 1.1e-287 993.4 855 61.1
ECA236G0268 Erigeron canadensis HOM05D004953 ORTHO05D006193 5.2e-287 991.1 845 59.8
MELO3C008751.2 Cucumis melo HOM05D004953 ORTHO05D006193 1.5e-286 989.6 835 61.9
CsaV3_2G009520 Cucumis sativus L. HOM05D004953 ORTHO05D006193 2.6e-286 988.8 830 61.9
Aa31LG11G3580 Aethionema arabicum HOM05D004953 ORTHO05D006193 7.3e-281 970.7 873 58.5
AUR62008065 Chenopodium quinoa HOM05D004953 ORTHO05D006193 2.8e-280 968.8 854 60.0
Aqoxy2G04177 Aquilegia oxysepala HOM05D004953 ORTHO05D006193 4.7e-280 968.0 824 61.7
SGA_v2.0_scaffold8G04488 Striga asiatica HOM05D004953 ORTHO05D006193 4.4e-278 961.4 853 59.0
Gohir.A11G144000 Gossypium hirsutum HOM05D004953 ORTHO05D006193 7.6e-278 960.7 738 66.5
TAR365G0304 Trochodendron aralioides HOM05D004953 ORTHO05D006193 2.4e-276 955.7 675 72.0
MBI10_g23576_MAGBIO Magnolia biondii HOM05D004953 ORTHO05D006193 1.6e-275 953.0 863 59.2
Actinidia04690 Actinidia chinensis HOM05D004953 ORTHO05D006193 6.0e-275 951.0 814 62.7
ClCG11G010960 Citrullus lanatus HOM05D004953 ORTHO05D006193 3.4e-270 935.3 861 58.9
PSO478G1281 Papaver somniferum HOM05D004953 ORTHO05D006193 7.6e-270 934.1 852 59.3
PSO017G6601 Papaver somniferum HOM05D004953 ORTHO05D006193 9.3e-268 927.2 852 59.0
Gohir.D11G150400 Gossypium hirsutum HOM05D004953 ORTHO05D006193 1.0e-266 923.7 737 64.7
Aa31LG11G8930 Aethionema arabicum HOM05D004953 ORTHO05D006193 4.2e-260 901.7 857 56.6
unitig_52.g16794 Utricularia gibba HOM05D004953 ORTHO05D006193 3.3e-241 839.0 856 51.9
Sed0015090 Sechium edule HOM05D004953 ORTHO05D006193 1.6e-235 820.1 851 53.2
DCAR_004775 Daucus carota HOM05D004953 ORTHO05D006193 1.0e-226 790.8 603 66.2
BcaC06g30800 Brassica carinata HOM05D004953 ORTHO05D006193 1.7e-224 783.5 747 56.0
Ah.11g050790 Amaranthus hybridus HOM05D004953 ORTHO05D006193 1.4e-215 753.8 651 61.1
HPP92_001916 Vanilla planifolia HOM05D004953 ORTHO05D006193 6.1e-211 738.4 864 48.7
CDE07G1537 Ceratophyllum demersum HOM05D004953 ORTHO05D006193 1.2e-190 671.0 855 44.6
ATR0743G003 Amborella trichopoda HOM05D004953 ORTHO05D006193 3.4e-185 652.9 882 45.1
Os01g0890900 Oryza sativa ssp. japonica HOM05D004953 ORTHO05D006193 4.0e-162 576.2 854 41.6
SEGI_29467 Sequoiadendron giganteum HOM05D004953 ORTHO05D006193 1.6e-150 537.7 849 38.9
Lalb_Chr03g0040531 Lupinus albus HOM05D004953 ORTHO05D006193 1.1e-148 531.6 463 62.2
Zm00001eb145140 Zea mays HOM05D004953 ORTHO05D006193 3.6e-147 526.6 737 43.7
Lalb_Chr03g0040541 Lupinus albus HOM05D004953 ORTHO05D006193 1.4e-146 524.6 406 63.5
Actinidia33396 Actinidia chinensis HOM05D004953 ORTHO05D006193 1.1e-140 505.0 430 63.0
CANSAT01G2868 Cannabis sativa HOM05D004953 ORTHO05D006193 3.1e-138 496.9 451 61.4
SMO201G0221 Selaginella moellendorffii HOM05D004953 ORTHO05D006193 1.7e-115 421.4 813 34.2
Mapoly0032s0035 Marchantia polymorpha HOM05D004953 ORTHO05D006193 4.2e-111 406.8 858 32.1
Glyma.09G246350 Glycine max HOM05D004953 ORTHO05D006193 3.0e-109 400.6 341 59.5
Actinidia23342 Actinidia chinensis HOM05D004953 ORTHO05D006193 1.2e-105 388.7 428 53.7
Actinidia33395 Actinidia chinensis HOM05D004953 ORTHO05D006193 2.0e-105 387.9 299 66.6
Pp3c2_410 Physcomitrium patens HOM05D004953 ORTHO05D006193 4.7e-102 376.7 827 31.8
Actinidia12854 Actinidia chinensis HOM05D004953 ORTHO05D006193 2.2e-96 357.8 264 69.3
FvH4_2g09600 Fragaria vesca HOM05D004953 ORTHO05D006193 1.1e-50 206.1 344 41.9
FAN24G3373 Fragaria x ananassa HOM05D004953 ORTHO05D006193 1.2e-49 202.6 350 41.1
Actinidia23343 Actinidia chinensis HOM05D004953 ORTHO05D006193 3.6e-46 191.0 143 67.8
TPR.G1778 Trifolium pratense HOM05D004953 ORTHO05D019267 1.2e-44 186.0 412 34.7
FAN11G3683 Fragaria x ananassa HOM05D004953 ORTHO05D006193 4.4e-44 184.1 343 37.0
FAN15G1853 Fragaria x ananassa HOM05D004953 ORTHO05D006193 8.1e-38 163.3 108 74.1
FvH4_4g15200 Fragaria vesca HOM05D004953 ORTHO05D006193 2.4e-37 161.8 134 65.7
FvH4_3g38850 Fragaria vesca HOM05D004953 ORTHO05D006193 4.4e-36 157.5 118 71.2
TAR365G0721 Trochodendron aralioides HOM05D004953 ORTHO05D006193 9.3e-34 149.8 153 55.6
FAN14G2335 Fragaria x ananassa HOM05D004953 ORTHO05D006193 1.9e-31 142.1 297 38.4
FvH4_6g36680 Fragaria vesca HOM05D004953 ORTHO05D006193 9.6e-23 113.2 124 50.0
FvH4_7g13151 Fragaria vesca HOM05D004953 ORTHO05D006193 3.7e-22 111.3 65 75.4
FAN14G2572 Fragaria x ananassa HOM05D004953 ORTHO05D006193 2.4e-21 108.6 73 72.6
FvH4_6g27414 Fragaria vesca HOM05D004953 ORTHO05D006193 3.1e-21 108.2 73 72.6
Actinidia29995 Actinidia chinensis HOM05D004953 ORTHO05D006193 1.2e-20 106.3 228 38.6
FvH4_2g12761 Fragaria vesca HOM05D004953 ORTHO05D006193 3.4e-20 104.8 73 69.9
FvH4_4g10312 Fragaria vesca HOM05D004953 ORTHO05D006193 3.4e-20 104.8 73 69.9
FvH4_6g36881 Fragaria vesca HOM05D004953 ORTHO05D006193 5.8e-20 104.0 73 69.9
CSS0012475 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 2.8e-14 85.1 61 67.2
FvH4_4g15182 Fragaria vesca HOM05D004953 ORTHO05D006193 1.1e-13 83.2 46 78.3
CSS0023073 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 4.1e-13 81.3 61 65.6
Peaxi162Scf00132g00233 Petunia axillaris HOM05D001229 ORTHO05D005418 1.2e-12 79.7 93 46.2
FvH4_7g08382 Fragaria vesca HOM05D004953 ORTHO05D006193 2.0e-12 79.0 55 69.1
CSS0040358 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 2.9e-11 75.1 60 65.0
FAN14G1126 Fragaria x ananassa HOM05D004953 ORTHO05D006193 6.5e-11 73.9 55 65.5
SMO203G0177 Selaginella moellendorffii HOM05D004953 ORTHO05D006193 1.9e-10 72.4 172 30.2
CSS0036997 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 2.5e-10 72.0 60 63.3
FAN09G3899 Fragaria x ananassa HOM05D004953 ORTHO05D006193 2.5e-10 72.0 55 63.6
FAN14G1607 Fragaria x ananassa HOM05D004953 ORTHO05D006193 4.2e-10 71.2 60 70.0
SMO203G0202 Selaginella moellendorffii HOM05D003498 ORTHO05D006193 4.2e-10 71.2 60 53.3
FAN24G1763 Fragaria x ananassa HOM05D004953 ORTHO05D006193 3.5e-09 68.2 38 78.9
TPR.G3742 Trifolium pratense HOM05D004953 ORTHO05D006193 3.3e-07 61.6 38 73.7
ATR0580G291 Amborella trichopoda HOM05D004953 ORTHO05D006193 9.7e-07 60.1 67 43.3


User provided reference genes

Program Settings