Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01000421001 Vitis vinifera HOM05D005918 ORTHO05D008619 1.7e-161 572.8 328 100.0
Haze_13001 Corylus avellana HOM05D005918 ORTHO05D008619 7.1e-83 311.6 349 57.9
Cfa014484 Carpinus fangiana HOM05D005918 ORTHO05D008619 6.0e-82 308.5 349 57.9
CiPaw.03G165700 Carya illinoinensis HOM05D005918 ORTHO05D008619 6.0e-82 308.5 364 57.1
Thecc.02G165700 Theobroma cacao HOM05D005918 ORTHO05D008619 7.4e-80 301.6 356 56.7
Duzib132G0072 Durio zibethinus HOM05D005918 ORTHO05D008619 1.3e-79 300.8 365 55.9
Atru.chr6.3104 Acer truncatum HOM05D005918 ORTHO05D008619 2.1e-79 300.1 362 47.5
Prupe.3G224700 Prunus persica HOM05D005918 ORTHO05D008619 3.1e-78 296.2 370 52.4
CSS0021142 Camellia sinensis var. sinensis HOM05D005918 ORTHO05D008619 9.0e-78 294.7 354 54.8
QL08p034510 Quercus lobata HOM05D005918 ORTHO05D008619 1.5e-77 293.9 366 54.6
Ciclev10018135m.g Citrus clementina HOM05D005918 ORTHO05D008619 3.4e-77 292.7 353 48.2
Duzib052G0766 Durio zibethinus HOM05D005918 ORTHO05D008619 3.4e-77 292.7 365 55.6
MD09G1101500 Malus domestica HOM05D005918 ORTHO05D008619 5.8e-77 292.0 371 52.8
Manes.13G075841 Manihot esculenta HOM05D005918 ORTHO05D008619 1.7e-76 290.4 357 54.6
Cpa.g.sc34.53 Carica papaya HOM05D005918 ORTHO05D008619 1.9e-75 287.0 342 55.0
Gorai.013G072400 Gossypium raimondii HOM05D005918 ORTHO05D008619 2.5e-75 286.6 362 55.5
Sabra13G0121500 Salix brachista HOM05D005918 ORTHO05D008619 2.5e-75 286.6 347 55.9
Gohir.D13G063800 Gossypium hirsutum HOM05D005918 ORTHO05D008619 2.1e-74 283.5 362 55.2
Potri.013G151200 Populus trichocarpa HOM05D005918 ORTHO05D008619 4.6e-74 282.3 347 55.3
Dinv13860 Davidia involucrata HOM05D005918 ORTHO05D008619 6.0e-74 282.0 356 53.9
RcHm_v2.0_Chr2g0160751 Rosa chinensis HOM05D005918 ORTHO05D008619 6.7e-73 278.5 351 55.3
Lj1C747T5 Lonicera japonica HOM05D005918 ORTHO05D008619 1.1e-72 277.7 351 52.1
Lalb_Chr03g0028981 Lupinus albus HOM05D005918 ORTHO05D008619 1.4e-70 270.8 366 50.0
FvH4_6g44010 Fragaria vesca HOM05D005918 ORTHO05D008619 2.4e-70 270.0 351 53.6
Cc05_g05630 Coffea canephora HOM05D005918 ORTHO05D008619 9.0e-70 268.1 355 50.4
Actinidia27026 Actinidia chinensis HOM05D005918 ORTHO05D008619 1.3e-68 264.2 353 52.7
FAN05G1098 Fragaria x ananassa HOM05D005918 ORTHO05D008619 1.3e-68 264.2 350 53.4
arahy.Tifrunner.gnm1.ann1.B9MIXY Arachis hypogaea HOM05D005918 ORTHO05D008619 2.2e-68 263.5 376 51.1
arahy.Tifrunner.gnm1.ann1.AV2ZVS Arachis hypogaea HOM05D005918 ORTHO05D008619 2.9e-68 263.1 387 50.1
PGSC0003DMG400026160 Solanum tuberosum HOM05D005918 ORTHO05D008619 5.0e-68 262.3 363 50.1
Nitab4.5_0001134g0010 Nicotiana tabacum HOM05D005918 ORTHO05D008619 8.5e-68 261.5 358 51.1
Nitab4.5_0004473g0010 Nicotiana tabacum HOM05D005918 ORTHO05D008619 8.5e-68 261.5 358 51.4
Glyma.12G103400 Glycine max HOM05D005918 ORTHO05D008619 9.3e-67 258.1 367 51.0
Phvul.011G108100 Phaseolus vulgaris HOM05D005918 ORTHO05D008619 1.6e-66 257.3 367 49.9
Lalb_Chr19g0135611 Lupinus albus HOM05D005918 ORTHO05D008619 2.1e-66 256.9 370 51.1
Oeu029444.1 Olea europaea HOM05D005918 ORTHO05D008619 2.1e-66 256.9 325 52.6
TWI75G1325 Tripterygium wilfordii HOM05D005918 ORTHO05D008619 2.7e-66 256.5 357 44.3
Rhsim06G0154300 Rhododendron simsii HOM05D005918 ORTHO05D008619 4.6e-66 255.8 351 47.0
VMungo1127G0943 Vigna mungo HOM05D005918 ORTHO05D008619 4.6e-66 255.8 367 50.1
CAN.G640.5 Capsicum annuum HOM05D005918 ORTHO05D008619 1.3e-65 254.2 361 49.0
Peaxi162Scf00007g01619 Petunia axillaris HOM05D005918 ORTHO05D008619 1.8e-65 253.8 355 51.3
Solyc07g053040.3 Solanum lycopersicum HOM05D005918 ORTHO05D008619 6.7e-65 251.9 365 48.2
FAN02G3920 Fragaria x ananassa HOM05D005918 ORTHO05D008619 2.4e-62 243.4 337 53.4
Psat7g156000 Pisum sativum HOM05D005918 ORTHO05D008619 9.1e-62 241.5 372 41.1
Medtr4g045900 Medicago truncatula HOM05D005918 ORTHO05D008619 3.4e-61 239.6 373 45.6
Sc06g0006100 Simmondsia chinensis HOM05D005918 ORTHO05D008619 1.5e-56 224.2 346 46.2
THA.LOC104826019 Tarenaya hassleriana HOM05D005918 ORTHO05D008619 2.6e-56 223.4 348 46.6
CsaV3_6G012610 Cucumis sativus L. HOM05D005918 ORTHO05D008619 3.7e-55 219.5 341 46.3
Lsat_1_v5_gn_3_42821 Lactuca sativa HOM05D005918 ORTHO05D008619 8.2e-55 218.4 347 46.1
Lj3g0013576 Lotus japonicus HOM05D005918 ORTHO05D008619 6.9e-54 215.3 368 38.3
BraA02t07503Z Brassica rapa HOM05D005918 ORTHO05D008619 2.6e-53 213.4 347 38.6
Thhalv10029130m.g Eutrema salsugineum HOM05D005918 ORTHO05D008619 7.7e-53 211.8 345 38.8
C02p39950 Brassica napus HOM05D005918 ORTHO05D008619 5.0e-52 209.1 347 38.0
A02p25150 Brassica napus HOM05D005918 ORTHO05D008619 6.5e-52 208.8 347 38.0
Sed0020119 Sechium edule HOM05D005918 ORTHO05D008619 6.5e-52 208.8 335 49.0
TPR.G24493 Trifolium pratense HOM05D005918 ORTHO05D008619 1.9e-51 207.2 373 37.3
BcaC03g16217 Brassica carinata HOM05D005918 ORTHO05D008619 4.2e-51 206.1 347 37.8
AT4G03220 Arabidopsis thaliana HOM05D005918 ORTHO05D008619 9.4e-51 204.9 343 37.9
AL6G49710 Arabidopsis lyrata HOM05D005918 ORTHO05D008619 1.2e-50 204.5 350 38.0
Sp6g03260 Schrenkiella parvula HOM05D005918 ORTHO05D008619 4.7e-50 202.6 354 37.0
HanXRQChr17g0543071 Helianthus annuus HOM05D005918 ORTHO05D008619 6.1e-50 202.2 360 38.1
BolC2t10022H Brassica oleracea HOM05D005918 ORTHO05D008619 1.0e-49 201.4 326 37.7
Aa31LG5G2720 Aethionema arabicum HOM05D005918 ORTHO05D008619 1.4e-49 201.1 347 43.8
BcaB05g23693 Brassica carinata HOM05D005918 ORTHO05D008619 1.8e-49 200.7 347 36.3
CARHR251670 Cardamine hirsuta HOM05D005918 ORTHO05D008619 2.3e-49 200.3 350 38.6
ClCG02G011180 Citrullus lanatus HOM05D005918 ORTHO05D008619 2.3e-49 200.3 358 45.0
Carub.0006s3383 Capsella rubella HOM05D005918 ORTHO05D008619 1.1e-48 198.0 348 37.1
Migut.M00375 Erythranthe guttata HOM05D005918 ORTHO05D008619 6.3e-47 192.2 265 49.8
SGA_v2.0_scaffold147G36349 Striga asiatica HOM05D005918 ORTHO05D008619 1.4e-46 191.0 369 44.4
CANSAT64G2706 Cannabis sativa HOM05D005918 ORTHO05D008619 3.1e-46 189.9 384 37.0
PGR042G3696 Punica granatum HOM05D005918 ORTHO05D008619 3.1e-46 189.9 372 35.5
DCAR_012967 Daucus carota HOM05D005918 ORTHO05D008619 1.5e-43 181.0 336 45.8
Nn1g06897 Nelumbo nucifera HOM05D005918 ORTHO05D008619 1.5e-40 171.0 363 32.8
Eucgr.A01743 Eucalyptus grandis HOM05D005918 ORTHO05D008619 3.3e-40 169.9 378 33.1
Dinv18568 Davidia involucrata HOM05D005918 ORTHO05D008619 1.3e-39 167.9 355 33.8
COL.COLO4_13044 Corchorus olitorius HOM05D005918 ORTHO05D008619 1.0e-36 158.3 152 54.6
Lj8C119G10 Lonicera japonica HOM05D005918 ORTHO05D008619 1.2e-34 151.4 365 31.0
Gohir.A13G058200 Gossypium hirsutum HOM05D005918 ORTHO05D008619 3.6e-34 149.8 180 61.1
ECA246G3314 Erigeron canadensis HOM05D005918 ORTHO05D008619 8.0e-34 148.7 236 39.8
MELO3C019770.2 Cucumis melo HOM05D005918 ORTHO05D008619 1.1e-27 128.3 169 44.4
unitig_578.g16466 Utricularia gibba HOM05D005918 ORTHO05D008619 1.1e-27 128.3 230 39.6
Haze_13000 Corylus avellana HOM05D005918 ORTHO05D008619 4.2e-27 126.3 283 31.8
Duzib248G1541 Durio zibethinus HOM05D005918 ORTHO05D008619 2.0e-21 107.5 336 27.7
MD17G1084600 Malus domestica HOM05D005918 ORTHO05D008619 2.3e-20 104.0 333 28.2
MD09G1101600 Malus domestica HOM05D005918 ORTHO05D008619 3.8e-20 103.2 342 26.9
Cfa014483 Carpinus fangiana HOM05D005918 ORTHO05D008619 1.5e-19 101.3 271 30.3
MD01G1113200 Malus domestica HOM05D005918 ORTHO05D008619 1.2e-18 98.2 351 27.1
Prupe.3G224500 Prunus persica HOM05D005918 ORTHO05D008619 1.8e-17 94.4 370 25.4
RcHm_v2.0_Chr2g0117831 Rosa chinensis HOM05D005918 ORTHO05D008619 1.8e-17 94.4 327 25.4
FAN14G1293 Fragaria x ananassa HOM05D000337 ORTHO05D000297 1.5e-16 91.3 287 26.5
FvH4_6g45630 Fragaria vesca HOM05D005918 ORTHO05D008619 2.9e-15 87.0 287 25.8
RcHm_v2.0_Chr1g0350511 Rosa chinensis HOM05D005918 ORTHO05D008619 3.2e-14 83.6 229 27.1
PSO675G3143 Papaver somniferum HOM05D000051 ORTHO05D000015 3.0e-12 77.0 345 26.7
RcHm_v2.0_Chr2g0086171 Rosa chinensis HOM05D005918 ORTHO05D008619 1.1e-11 75.1 203 30.5
RcHm_v2.0_Chr5g0039731 Rosa chinensis HOM05D005918 ORTHO05D008619 1.1e-11 75.1 212 26.9
TWI23G0786 Tripterygium wilfordii HOM05D000051 ORTHO05D000015 1.2e-10 71.6 215 30.2
TWI38G0404 Tripterygium wilfordii HOM05D000051 ORTHO05D000015 6.2e-10 69.3 346 24.9
CSS0010373 Camellia sinensis var. sinensis HOM05D000051 ORTHO05D000015 1.0e-09 68.6 230 31.7
MBI02_g15268_MAGBIO Magnolia biondii HOM05D000051 ORTHO05D000015 1.0e-09 68.6 337 25.5
MBI18_g41461_MAGBIO Magnolia biondii HOM05D000051 ORTHO05D000015 1.0e-09 68.6 321 24.9
Dinv18383 Davidia involucrata HOM05D000051 ORTHO05D008292 1.4e-09 68.2 199 32.2
CSS0034448 Camellia sinensis var. sinensis HOM05D000051 ORTHO05D000015 3.1e-09 67.0 226 30.1
Cfa000226 Carpinus fangiana HOM05D000051 ORTHO05D000015 5.2e-09 66.2 208 33.2
PSO384G1928 Papaver somniferum HOM05D000051 ORTHO05D000015 5.2e-09 66.2 195 31.3
FAN25G2193 Fragaria x ananassa HOM05D005918 ORTHO05D008619 1.2e-08 65.1 178 30.3
RcHm_v2.0_Chr5g0028261 Rosa chinensis HOM05D000051 ORTHO05D000015 1.2e-08 65.1 209 33.5
Nitab4.5_0000397g0270 Nicotiana tabacum HOM05D000051 ORTHO05D000015 1.5e-08 64.7 227 27.3
vmacro09405 Vaccinium macrocarpon HOM05D000051 ORTHO05D000015 1.5e-08 64.7 350 26.3
HanXRQChr13g0407771 Helianthus annuus HOM05D000051 ORTHO05D000015 2.0e-08 64.3 209 29.2
Medtr7g023310 Medicago truncatula HOM05D000051 ORTHO05D000015 2.6e-08 63.9 218 28.0
TAR624G0688 Trochodendron aralioides HOM05D001396 ORTHO05D000493 2.6e-08 63.9 213 28.6
Lj3g0021941 Lotus japonicus HOM05D000051 ORTHO05D000015 3.4e-08 63.5 214 27.6
Nitab4.5_0011608g0030 Nicotiana tabacum HOM05D000051 ORTHO05D000015 3.4e-08 63.5 225 27.1
Prupe.3G224300 Prunus persica HOM05D005918 ORTHO05D008619 3.4e-08 63.5 285 30.9
QL01p041826 Quercus lobata HOM05D000051 ORTHO05D000015 4.4e-08 63.2 339 23.6
MBI18_g06655_MAGBIO Magnolia biondii HOM05D000051 ORTHO05D000015 5.8e-08 62.8 333 24.3
C05p47950 Brassica napus HOM05D002909 ORTHO05D000493 7.5e-08 62.4 197 27.9
Ciclev10027565m.g Citrus clementina HOM05D001477 ORTHO05D001182 7.5e-08 62.4 181 29.8
MBI18_g33590_MAGBIO Magnolia biondii HOM05D000051 ORTHO05D000015 7.5e-08 62.4 234 26.9
Medtr3g109982 Medicago truncatula HOM05D000051 ORTHO05D000015 7.5e-08 62.4 185 29.2
Medtr3g110010 Medicago truncatula HOM05D001346 ORTHO05D001205 7.5e-08 62.4 185 29.2
Ciclev10010758m.g Citrus clementina HOM05D000051 ORTHO05D000015 9.8e-08 62.0 180 27.2
PSO443G0022 Papaver somniferum HOM05D000051 ORTHO05D000015 9.8e-08 62.0 189 29.6
Lj1A869T76 Lonicera japonica HOM05D000051 ORTHO05D000015 1.3e-07 61.6 213 28.2
Rhsim04G0037500 Rhododendron simsii HOM05D000051 ORTHO05D000015 1.3e-07 61.6 193 30.1
MD11G1266000 Malus domestica HOM05D000051 ORTHO05D000015 1.7e-07 61.2 188 29.8
Prupe.4G159000 Prunus persica HOM05D000051 ORTHO05D000015 1.7e-07 61.2 225 29.8
FAN09G1918 Fragaria x ananassa HOM05D005918 ORTHO05D020733 2.2e-07 60.8 103 35.9
Lsat_1_v5_gn_7_109401 Lactuca sativa HOM05D000051 ORTHO05D000015 2.2e-07 60.8 206 30.6
Medtr5g039950 Medicago truncatula HOM05D000051 ORTHO05D000015 2.2e-07 60.8 186 29.0
Carub.0002s0507 Capsella rubella HOM05D002909 ORTHO05D000493 2.9e-07 60.5 191 31.4
Rhsim04G0036700 Rhododendron simsii HOM05D000051 ORTHO05D000015 2.9e-07 60.5 142 37.3
BcaC05g28663 Brassica carinata HOM05D002909 ORTHO05D000493 3.7e-07 60.1 197 27.9
BolC5t33506H Brassica oleracea HOM05D002909 ORTHO05D000493 3.7e-07 60.1 197 27.9
Ciclev10024490m.g Citrus clementina HOM05D000051 ORTHO05D000015 3.7e-07 60.1 322 26.7
Lsat_1_v5_gn_9_94060 Lactuca sativa HOM05D000051 ORTHO05D000015 3.7e-07 60.1 197 31.0
PSO144G0009 Papaver somniferum HOM05D000051 ORTHO05D000015 3.7e-07 60.1 198 28.8
BraA05t21995Z Brassica rapa HOM05D002909 ORTHO05D000493 4.9e-07 59.7 197 27.4
CARHR116130 Cardamine hirsuta HOM05D005918 ORTHO05D008619 6.4e-07 59.3 63 47.6
Manes.05G056200 Manihot esculenta HOM05D000051 ORTHO05D000015 6.4e-07 59.3 222 28.4
Peaxi162Scf00450g00852 Petunia axillaris HOM05D000051 ORTHO05D000015 6.4e-07 59.3 210 25.2
Aqoxy1G03313 Aquilegia oxysepala HOM05D000051 ORTHO05D000015 8.3e-07 58.9 342 23.4
Nn1g06755 Nelumbo nucifera HOM05D001396 ORTHO05D000493 8.3e-07 58.9 364 26.6
A05p31620 Brassica napus HOM05D002909 ORTHO05D000493 1.1e-06 58.5 197 27.9
MD03G1246000 Malus domestica HOM05D000051 ORTHO05D000015 1.1e-06 58.5 201 31.8
Medtr5g039970 Medicago truncatula HOM05D000051 ORTHO05D000015 1.1e-06 58.5 198 30.3
Aqoxy1G01916 Aquilegia oxysepala HOM05D000051 ORTHO05D000015 1.4e-06 58.2 196 28.1
Hma1.2p1_2867F.1_g329630 Hydrangea macrophylla HOM05D001396 ORTHO05D000493 1.4e-06 58.2 337 24.9
Lj7A357T28 Lonicera japonica HOM05D000051 ORTHO05D000015 1.4e-06 58.2 192 28.1
Medtr3g048290 Medicago truncatula HOM05D000051 ORTHO05D000015 1.4e-06 58.2 200 29.5
Sabra15G0001300 Salix brachista HOM05D001243 ORTHO05D000843 1.4e-06 58.2 332 24.4
CSS0018246 Camellia sinensis var. sinensis HOM05D000051 ORTHO05D000015 1.9e-06 57.8 215 27.4
Oeu007604.1 Olea europaea HOM05D000051 ORTHO05D000015 1.9e-06 57.8 199 28.6
PSO063G7158 Papaver somniferum HOM05D000051 ORTHO05D000015 1.9e-06 57.8 217 27.6
PSO675G7351 Papaver somniferum HOM05D000051 ORTHO05D000015 1.9e-06 57.8 201 27.4
QL05p074559 Quercus lobata HOM05D000051 ORTHO05D000015 1.9e-06 57.8 331 23.9
TPR.G22358 Trifolium pratense HOM05D000051 ORTHO05D000015 1.9e-06 57.8 206 27.7
MD03G1253200 Malus domestica HOM05D000051 ORTHO05D000015 2.4e-06 57.4 213 29.1
PSO513G0056 Papaver somniferum HOM05D000051 ORTHO05D000015 2.4e-06 57.4 318 22.6
Aqoxy1G02688 Aquilegia oxysepala HOM05D000051 ORTHO05D000015 3.2e-06 57.0 231 24.7
PSO675G0318 Papaver somniferum HOM05D000051 ORTHO05D000015 3.2e-06 57.0 197 30.5
Rhsim04G0037400 Rhododendron simsii HOM05D000051 ORTHO05D000015 3.2e-06 57.0 146 36.3
RcHm_v2.0_Chr5g0069831 Rosa chinensis HOM05D000051 ORTHO05D000015 3.2e-06 57.0 205 29.8
Aqoxy3G02193 Aquilegia oxysepala HOM05D000051 ORTHO05D000015 4.1e-06 56.6 163 31.9
Dinv40730 Davidia involucrata HOM05D000051 ORTHO05D000015 4.1e-06 56.6 198 26.8
Nn1g06757 Nelumbo nucifera HOM05D000051 ORTHO05D000843 4.1e-06 56.6 214 29.4
PSO063G6440 Papaver somniferum HOM05D000051 ORTHO05D000015 4.1e-06 56.6 215 27.4
PSO541G0345 Papaver somniferum HOM05D000051 ORTHO05D000015 4.1e-06 56.6 341 23.2
QL01p041777 Quercus lobata HOM05D000051 ORTHO05D000015 4.1e-06 56.6 219 29.7
QL08p012534 Quercus lobata HOM05D000051 ORTHO05D000015 4.1e-06 56.6 199 28.6
TAR627G0813 Trochodendron aralioides HOM05D000421 ORTHO05D001182 4.1e-06 56.6 216 27.3
Atru.chr1.2844 Acer truncatum HOM05D001477 ORTHO05D001182 5.4e-06 56.2 215 27.9
ECA236G0591 Erigeron canadensis HOM05D000051 ORTHO05D000015 5.4e-06 56.2 207 29.5
Peaxi162Scf00853g00318 Petunia axillaris HOM05D000051 ORTHO05D000015 5.4e-06 56.2 204 29.4
Potri.015G002100 Populus trichocarpa HOM05D001243 ORTHO05D000843 5.4e-06 56.2 353 23.8
RhsimUnG0013100 Rhododendron simsii HOM05D000051 ORTHO05D000015 5.4e-06 56.2 215 32.1
Lj3g0004141 Lotus japonicus HOM05D000051 ORTHO05D000015 7.0e-06 55.8 201 28.4
PSO170G5088 Papaver somniferum HOM05D000051 ORTHO05D000015 7.0e-06 55.8 205 26.8
PSO573G0022 Papaver somniferum HOM05D000051 ORTHO05D000015 7.0e-06 55.8 339 23.3
Rhsim04G0036800 Rhododendron simsii HOM05D000051 ORTHO05D000015 7.0e-06 55.8 194 28.9
MSTRG.15164 Avicennia marina HOM05D000051 ORTHO05D000015 9.2e-06 55.5 208 27.4


User provided reference genes

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