Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01000163001 Vitis vinifera HOM05D004966 ORTHO05D006199 0.0e+00 1318.9 982 100.0
Actinidia32817 Actinidia chinensis HOM05D004966 ORTHO05D006199 3.1e-291 1005.4 1065 75.3
CSS0024631 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 8.7e-286 987.3 1073 76.3
Hma1.2p1_0017F.1_g012040 Hydrangea macrophylla HOM05D004966 ORTHO05D006199 2.1e-279 966.1 1043 77.2
Thecc.01G067600 Theobroma cacao HOM05D004966 ORTHO05D006199 3.7e-276 955.3 1102 71.1
Cfa004090 Carpinus fangiana HOM05D004966 ORTHO05D006199 1.4e-275 953.4 1057 73.9
Ca_24712_v3 Cicer arietinum L. HOM05D004966 ORTHO05D006199 9.1e-275 950.7 1042 72.6
Ca_24727_v3 Cicer arietinum L. HOM05D004966 ORTHO05D006199 9.1e-275 950.7 1042 72.6
Ciclev10024760m.g Citrus clementina HOM05D004966 ORTHO05D006199 8.5e-273 944.1 1110 71.8
Duzib147G1627 Durio zibethinus HOM05D004966 ORTHO05D006199 1.9e-272 943.0 1111 70.5
Rhsim08G0096300 Rhododendron simsii HOM05D004966 ORTHO05D006199 2.7e-271 939.1 1093 70.9
Atru.chr3.210 Acer truncatum HOM05D004966 ORTHO05D006199 1.4e-270 936.8 1107 70.6
TPR.G20946 Trifolium pratense HOM05D004966 ORTHO05D006199 5.1e-270 934.9 1045 72.8
Manes.12G112800 Manihot esculenta HOM05D004966 ORTHO05D006199 1.1e-269 933.7 1099 71.8
Prupe.6G225100 Prunus persica HOM05D004966 ORTHO05D006199 9.7e-269 930.6 1052 72.6
Medtr5g016190 Medicago truncatula HOM05D004966 ORTHO05D006199 1.3e-268 930.2 1041 73.0
Nn5g30492 Nelumbo nucifera HOM05D004966 ORTHO05D006199 1.3e-268 930.2 995 78.2
TAR625G0217 Trochodendron aralioides HOM05D004966 ORTHO05D006199 1.3e-268 930.2 1000 77.2
COL.COLO4_11522 Corchorus olitorius HOM05D004966 ORTHO05D006199 1.7e-268 929.9 1126 70.8
Nitab4.5_0000868g0040 Nicotiana tabacum HOM05D004966 ORTHO05D006199 2.2e-268 929.5 1057 72.0
Solyc02g092780.3 Solanum lycopersicum HOM05D004966 ORTHO05D006199 1.4e-267 926.8 1057 72.6
Sopen02g037320 Solanum pennellii HOM05D004966 ORTHO05D006199 1.2e-266 923.7 1057 71.5
TWI09G0336 Tripterygium wilfordii HOM05D004966 ORTHO05D006199 5.9e-266 921.4 1111 69.6
Gohir.A11G217900 Gossypium hirsutum HOM05D004966 ORTHO05D006199 1.0e-265 920.6 1111 69.3
Glyma.17G164600 Glycine max HOM05D004966 ORTHO05D006199 1.3e-265 920.2 1047 70.7
Potri.007G052200 Populus trichocarpa HOM05D004966 ORTHO05D006199 1.3e-265 920.2 1106 70.3
Lj2g0010110 Lotus japonicus HOM05D004966 ORTHO05D006199 1.7e-265 919.8 1041 71.2
Gorai.007G220700 Gossypium raimondii HOM05D004966 ORTHO05D006199 2.2e-265 919.5 1111 69.0
Cc07_g06700 Coffea canephora HOM05D004966 ORTHO05D006199 1.1e-264 917.1 1062 70.5
CANSAT01G2710 Cannabis sativa HOM05D004966 ORTHO05D006199 1.9e-264 916.4 1043 72.1
Aqoxy6G02774 Aquilegia oxysepala HOM05D004966 ORTHO05D006199 1.2e-263 913.7 1031 72.1
Haze_15324 Corylus avellana HOM05D004966 ORTHO05D006199 2.7e-263 912.5 1047 74.7
Glyma.05G102400 Glycine max HOM05D004966 ORTHO05D006199 4.7e-263 911.8 1041 70.4
Gohir.D11G205500 Gossypium hirsutum HOM05D004966 ORTHO05D006199 6.1e-263 911.4 1111 68.8
MD02G1181200 Malus domestica HOM05D004966 ORTHO05D006199 6.1e-263 911.4 1053 70.6
Phvul.003G238000 Phaseolus vulgaris HOM05D004966 ORTHO05D006199 2.3e-262 909.4 1043 70.5
VMungo0251G2147 Vigna mungo HOM05D004966 ORTHO05D006199 1.5e-261 906.7 1043 70.3
Eucgr.I00728 Eucalyptus grandis HOM05D004966 ORTHO05D006199 2.6e-261 906.0 1048 70.9
Sc16g0004960 Simmondsia chinensis HOM05D004966 ORTHO05D006199 2.6e-261 906.0 1029 71.1
Sabra07G0045800 Salix brachista HOM05D004966 ORTHO05D006199 4.4e-261 905.2 1109 70.0
Glyma.01G191100 Glycine max HOM05D004966 ORTHO05D006199 5.7e-261 904.8 1050 70.1
RcHm_v2.0_Chr2g0107271 Rosa chinensis HOM05D004966 ORTHO05D006199 7.4e-261 904.4 1089 68.6
PGR004G2163 Punica granatum HOM05D004966 ORTHO05D006199 1.7e-260 903.3 1035 72.1
Oeu013276.1 Olea europaea HOM05D004966 ORTHO05D006199 6.3e-260 901.4 1041 60.6
arahy.Tifrunner.gnm1.ann1.138YHT Arachis hypogaea HOM05D004966 ORTHO05D006199 1.4e-259 900.2 1047 69.4
Hund16378 Selenicereus undatus HOM05D004966 ORTHO05D006199 8.5e-257 891.0 1037 69.8
ECA238G2979 Erigeron canadensis HOM05D004966 ORTHO05D006199 2.5e-256 889.4 1054 70.3
Sed0025120 Sechium edule HOM05D004966 ORTHO05D006199 3.6e-255 885.6 1048 69.5
CsaV3_6G043790 Cucumis sativus L. HOM05D004966 ORTHO05D006199 5.7e-253 878.2 1049 69.1
Duzib187G0681 Durio zibethinus HOM05D004966 ORTHO05D006199 7.5e-253 877.9 1110 68.4
TWI73G0630 Tripterygium wilfordii HOM05D004966 ORTHO05D006199 1.3e-252 877.1 1109 67.6
THA.LOC104807611 Tarenaya hassleriana HOM05D004966 ORTHO05D006199 4.8e-252 875.2 1083 66.9
Migut.H00376 Erythranthe guttata HOM05D004966 ORTHO05D006199 3.1e-251 872.5 1034 69.7
Lalb_Chr05g0226061 Lupinus albus HOM05D004966 ORTHO05D006199 2.9e-249 865.9 1036 70.8
FvH4_1g17100 Fragaria vesca HOM05D004966 ORTHO05D006199 6.5e-249 864.8 1085 68.0
FAN19G1580 Fragaria x ananassa HOM05D004966 ORTHO05D006199 6.5e-249 864.8 1085 68.0
DCAR_010836 Daucus carota HOM05D004966 ORTHO05D006199 3.0e-246 855.9 1078 68.8
MSTRG.23699 Avicennia marina HOM05D004966 ORTHO05D006199 2.0e-245 853.2 1044 68.7
Lsat_1_v5_gn_2_83581 Lactuca sativa HOM05D004966 ORTHO05D006199 3.4e-245 852.4 1021 70.3
EL10Ac6g15665 Beta vulgaris HOM05D004966 ORTHO05D006199 1.7e-244 850.1 1027 69.4
A01p01480 Brassica napus HOM05D004966 ORTHO05D006199 6.3e-244 848.2 1035 67.3
BolC1t00159H Brassica oleracea HOM05D004966 ORTHO05D006199 4.1e-243 845.5 1056 66.5
Lj4g0015306 Lotus japonicus HOM05D004966 ORTHO05D006199 5.4e-243 845.1 1037 68.3
C01p01650 Brassica napus HOM05D004966 ORTHO05D006199 9.1e-243 844.3 1056 66.4
arahy.Tifrunner.gnm1.ann1.EHFU3U Arachis hypogaea HOM05D004966 ORTHO05D006199 1.2e-242 844.0 1049 67.5
BcaNung05081 Brassica carinata HOM05D004966 ORTHO05D006199 1.6e-242 843.6 1048 66.8
arahy.Tifrunner.gnm1.ann1.E3XCDG Arachis hypogaea HOM05D004966 ORTHO05D006199 5.9e-242 841.6 1043 67.6
HanXRQChr14g0441841 Helianthus annuus HOM05D004966 ORTHO05D006199 5.9e-242 841.6 1040 68.7
BraA01t00142Z Brassica rapa HOM05D004966 ORTHO05D006199 1.7e-241 840.1 1039 64.0
AL7G13330 Arabidopsis lyrata HOM05D004966 ORTHO05D006199 3.8e-241 839.0 1046 66.3
Carub.0007s0282 Capsella rubella HOM05D004966 ORTHO05D006199 3.8e-241 839.0 1074 65.1
FAN28G1348 Fragaria x ananassa HOM05D004966 ORTHO05D006199 1.9e-240 836.6 1088 67.1
Lj4C159G2 Lonicera japonica HOM05D004966 ORTHO05D006199 7.2e-240 834.7 1055 67.6
FAN26G1585 Fragaria x ananassa HOM05D004966 ORTHO05D006199 3.6e-239 832.4 1076 67.5
Aa31LG6G14330 Aethionema arabicum HOM05D004966 ORTHO05D006199 1.0e-238 830.9 1082 64.9
PSO541G4192 Papaver somniferum HOM05D004966 ORTHO05D006199 1.4e-238 830.5 1042 68.4
PSO675G4881 Papaver somniferum HOM05D004966 ORTHO05D006199 9.8e-237 824.3 1046 68.1
vmacro17983 Vaccinium macrocarpon HOM05D004966 ORTHO05D006199 1.6e-234 817.0 1216 47.5
CiPaw.01G008200 Carya illinoinensis HOM05D004966 ORTHO05D006199 1.3e-233 813.9 486 81.7
arahy.Tifrunner.gnm1.ann1.E99DR7 Arachis hypogaea HOM05D004966 ORTHO05D006199 1.5e-232 810.4 1043 66.2
AT4G37460 Arabidopsis thaliana HOM05D004966 ORTHO05D006199 1.9e-232 810.1 1051 65.2
AUR62038275 Chenopodium quinoa HOM05D004966 ORTHO05D006199 4.7e-231 805.4 1050 65.7
Nitab4.5_0001439g0170 Nicotiana tabacum HOM05D004966 ORTHO05D006199 6.1e-231 805.1 1057 67.7
SGA_v2.0_scaffold15G07400 Striga asiatica HOM05D004966 ORTHO05D006199 1.2e-229 800.8 1125 45.8
CARHR245860 Cardamine hirsuta HOM05D004966 ORTHO05D006199 9.2e-227 791.2 1057 64.0
AUR62003963 Chenopodium quinoa HOM05D004966 ORTHO05D006199 1.2e-226 790.8 1042 66.6
Psat2g169880 Pisum sativum HOM05D004966 ORTHO05D006199 1.6e-226 790.4 490 77.1
MELO3C007603.2 Cucumis melo HOM05D004966 ORTHO05D006199 2.5e-224 783.1 1059 59.8
BcaNung03662 Brassica carinata HOM05D004966 ORTHO05D006199 4.3e-224 782.3 1017 65.9
MD15G1292200 Malus domestica HOM05D004966 ORTHO05D006199 3.1e-222 776.2 489 75.9
CAN.G1075.3 Capsicum annuum HOM05D004966 ORTHO05D006199 5.2e-222 775.4 488 77.3
Dinv30059 Davidia involucrata HOM05D004966 ORTHO05D006199 1.4e-219 767.3 917 75.2
Phvul.002G013932 Phaseolus vulgaris HOM05D004966 ORTHO05D006199 1.4e-219 767.3 490 76.3
CSS0020625 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 8.3e-212 741.5 448 80.6
ClCG01G017250 Citrullus lanatus HOM05D004966 ORTHO05D006199 4.6e-210 735.7 1049 65.1
MBI16_g06665_MAGBIO Magnolia biondii HOM05D004966 ORTHO05D006199 4.7e-207 725.7 489 73.0
Os07g0113700 Oryza sativa ssp. japonica HOM05D004966 ORTHO05D006199 9.9e-205 718.0 1019 60.5
SEGI_23316 Sequoiadendron giganteum HOM05D004966 ORTHO05D006199 9.9e-205 718.0 989 67.1
Zm00001eb118220 Zea mays HOM05D004966 ORTHO05D006199 1.3e-204 717.6 1019 56.4
Peaxi162Scf00264g00044 Petunia axillaris HOM05D004966 ORTHO05D006199 2.8e-191 673.3 980 59.3
ATR0661G243 Amborella trichopoda HOM05D004966 ORTHO05D006199 1.9e-179 634.0 484 66.3
unitig_62.g23418 Utricularia gibba HOM05D004966 ORTHO05D006199 5.0e-164 582.8 949 56.9
Thhalv10024286m.g Eutrema salsugineum HOM05D004966 ORTHO05D006199 2.3e-161 573.9 913 64.0
TAR381G1622 Trochodendron aralioides HOM05D004966 ORTHO05D006199 1.1e-158 565.1 793 75.9
Pp3c2_36070 Physcomitrium patens HOM05D004966 ORTHO05D006199 8.8e-145 518.8 980 48.0
Mapoly0153s0004 Marchantia polymorpha HOM05D004966 ORTHO05D006199 4.4e-136 490.0 979 50.6
Ah.03g146320 Amaranthus hybridus HOM05D004966 ORTHO05D006199 7.5e-136 489.2 444 58.6
Lalb_Chr16g0389061 Lupinus albus HOM05D004966 ORTHO05D006199 3.0e-121 440.7 254 79.1
Lalb_Chr16g0389071 Lupinus albus HOM05D004966 ORTHO05D006199 1.7e-116 424.9 766 67.4
CBR_g36368 Chara braunii HOM05D004966 ORTHO05D006199 2.1e-98 364.8 534 38.4
Dinv26891 Davidia involucrata HOM05D004966 ORTHO05D006199 9.9e-96 355.9 206 81.1
BolC7t46655H Brassica oleracea HOM05D004966 ORTHO05D006199 6.4e-95 353.2 499 44.5
Cpa.g.sc1082.1 Carica papaya HOM05D004966 ORTHO05D006199 8.1e-90 336.3 203 78.8
Cre01.g021450 Chlamydomonas reinhardtii HOM05D004966 ORTHO05D006199 5.8e-72 276.9 448 37.3
Sp7g35120 Schrenkiella parvula HOM05D004966 ORTHO05D006199 2.4e-70 271.6 698 56.2
Duzib264G0118 Durio zibethinus HOM05D004966 ORTHO05D006199 3.9e-68 264.2 264 54.5
C07p62400 Brassica napus HOM05D004966 ORTHO05D006199 6.7e-68 263.5 493 37.7
CAN.G1075.4 Capsicum annuum HOM05D004966 ORTHO05D006199 1.2e-64 252.7 337 47.5
MD15G1292300 Malus domestica HOM05D004966 ORTHO05D006199 1.5e-59 235.7 333 45.3
BcaNung02943 Brassica carinata HOM05D004966 ORTHO05D006199 1.4e-54 219.2 164 68.3
FAN23G2362 Fragaria x ananassa HOM05D004966 ORTHO05D006199 7.9e-53 213.4 323 50.2
CiPaw.01G008100 Carya illinoinensis HOM05D004966 ORTHO05D006199 8.2e-50 203.4 181 64.1
Cpa.g.sc6.59 Carica papaya HOM05D004966 ORTHO05D006199 3.2e-46 191.4 182 58.8
BcaNung02944 Brassica carinata HOM05D004966 ORTHO05D006199 5.1e-44 184.1 134 62.7
CSS0022043 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 9.7e-43 179.9 109 85.3
A03p65150 Brassica napus HOM05D004966 ORTHO05D006199 5.3e-41 174.1 130 67.7
BraA03t15573Z Brassica rapa HOM05D004966 ORTHO05D006199 9.1e-41 173.3 130 67.7
Glyma.11G051133 Glycine max HOM05D004966 ORTHO05D006199 1.5e-40 172.6 184 50.0
CSS0040429 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 1.9e-38 165.6 93 87.1
Cpa.g.sc6.60 Carica papaya HOM05D004966 ORTHO05D006199 5.1e-36 157.5 99 75.8
Ah.03g146310 Amaranthus hybridus HOM05D004966 ORTHO05D006199 2.6e-35 155.2 93 80.6
Glyma.11G051067 Glycine max HOM05D004966 ORTHO05D006199 1.3e-34 152.9 118 68.6
BcaNung02945 Brassica carinata HOM05D004966 ORTHO05D006199 1.0e-31 143.3 93 76.3
CSS0006661 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 1.0e-31 143.3 85 72.9
RcHm_v2.0_Chr1g0315291 Rosa chinensis HOM05D004966 ORTHO05D006199 3.1e-25 121.7 76 78.9
BcaNung02055 Brassica carinata HOM05D004966 ORTHO05D006199 6.5e-23 114.0 106 61.3
Oeu011609.3 Olea europaea HOM05D004966 ORTHO05D006199 2.6e-19 102.1 129 46.5
ATR0030G036 Amborella trichopoda HOM05D004966 ORTHO05D006199 7.2e-14 84.0 126 38.1
Phvul.002G013866 Phaseolus vulgaris HOM05D004966 ORTHO05D006199 9.8e-11 73.6 133 36.1
CSS0024681 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 4.8e-10 71.2 61 60.7
CBR_g36362 Chara braunii HOM05D004966 ORTHO05D006199 1.6e-08 66.2 260 24.6
ATR0030G038 Amborella trichopoda HOM05D047453 ORTHO05D006199 2.9e-07 62.0 68 52.9
Lsat_1_v5_gn_8_118440 Lactuca sativa HOM05D004966 ORTHO05D231273 1.9e-06 59.3 50 50.0


User provided reference genes

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