Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_7g32020 Fragaria vesca HOM05D007331 ORTHO05D009273 4.4e-89 331.3 168 100.0
FAN01G2673 Fragaria x ananassa HOM05D007331 ORTHO05D009273 1.1e-87 326.6 168 98.2
RcHm_v2.0_Chr1g0381631 Rosa chinensis HOM05D007331 ORTHO05D009273 1.6e-78 296.2 162 93.2
MD01G1223100 Malus domestica HOM05D007331 ORTHO05D009273 4.1e-66 255.0 166 78.9
Prupe.2G313600 Prunus persica HOM05D007331 ORTHO05D009273 2.3e-61 239.2 134 86.6
Cfa016463 Carpinus fangiana HOM05D007331 ORTHO05D009273 8.2e-59 230.7 153 73.2
GSVIVG01010322001 Vitis vinifera HOM05D007331 ORTHO05D009273 2.0e-57 226.1 135 80.0
Atru.chr12.2246 Acer truncatum HOM05D007331 ORTHO05D009273 4.5e-57 224.9 140 78.6
QL09p007955 Quercus lobata HOM05D007331 ORTHO05D009273 2.2e-56 222.6 170 66.5
CiPaw.05G198500 Carya illinoinensis HOM05D007331 ORTHO05D009273 3.8e-56 221.9 163 69.3
CANSAT21G1988 Cannabis sativa HOM05D007331 ORTHO05D009273 1.9e-55 219.5 169 66.9
Haze_00231 Corylus avellana HOM05D007331 ORTHO05D009273 3.2e-55 218.8 196 61.7
FAN06G3260 Fragaria x ananassa HOM05D007331 ORTHO05D009273 4.2e-55 218.4 107 100.0
Gohir.A12G248800 Gossypium hirsutum HOM05D007331 ORTHO05D009273 3.9e-53 211.8 134 73.9
Manes.05G191300 Manihot esculenta HOM05D007331 ORTHO05D009273 3.9e-53 211.8 166 66.3
COL.COLO4_16795 Corchorus olitorius HOM05D007331 ORTHO05D009273 5.1e-53 211.5 134 73.9
Eucgr.K00396 Eucalyptus grandis HOM05D007331 ORTHO05D009273 6.7e-53 211.1 132 76.5
Gorai.008G267700 Gossypium raimondii HOM05D007331 ORTHO05D009273 6.7e-53 211.1 132 75.0
THA.LOC104798905 Tarenaya hassleriana HOM05D007331 ORTHO05D009273 6.7e-53 211.1 160 67.5
Sp2g23030 Schrenkiella parvula HOM05D007331 ORTHO05D009273 8.8e-53 210.7 141 70.9
ClCG05G009050 Citrullus lanatus HOM05D007331 ORTHO05D009273 1.5e-52 209.9 171 66.1
MELO3C019371.2 Cucumis melo HOM05D000442 ORTHO05D007032 1.5e-52 209.9 135 77.0
Thhalv10005048m.g Eutrema salsugineum HOM05D007331 ORTHO05D009273 1.5e-52 209.9 148 69.6
Sabra15G0008800 Salix brachista HOM05D007331 ORTHO05D009273 1.5e-52 209.9 140 74.3
BcaNung01223 Brassica carinata HOM05D007331 ORTHO05D009273 2.0e-52 209.5 141 71.6
Ciclev10022582m.g Citrus clementina HOM05D007331 ORTHO05D009273 2.0e-52 209.5 166 62.7
Sed0023714 Sechium edule HOM05D007331 ORTHO05D009273 2.0e-52 209.5 137 77.4
AL6G35810 Arabidopsis lyrata HOM05D007331 ORTHO05D009273 3.3e-52 208.8 168 61.3
A06p35140 Brassica napus HOM05D007331 ORTHO05D009273 4.3e-52 208.4 167 65.3
BraA06t26434Z Brassica rapa HOM05D007331 ORTHO05D009273 5.7e-52 208.0 141 70.9
C07p43430 Brassica napus HOM05D007331 ORTHO05D009273 9.7e-52 207.2 167 65.3
BolC7t44869H Brassica oleracea HOM05D007331 ORTHO05D009273 9.7e-52 207.2 167 65.3
Medtr3g491820 Medicago truncatula HOM05D007331 ORTHO05D009273 2.8e-51 205.7 168 63.1
AT5G24314 Arabidopsis thaliana HOM05D007331 ORTHO05D009273 3.7e-51 205.3 160 62.5
CARHR189150 Cardamine hirsuta HOM05D007331 ORTHO05D009273 3.7e-51 205.3 138 70.3
CsaV3_3G019730 Cucumis sativus L. HOM05D007331 ORTHO05D009273 3.7e-51 205.3 165 67.3
Potri.015G010700 Populus trichocarpa HOM05D007331 ORTHO05D009273 3.7e-51 205.3 167 65.9
PGR142G4299 Punica granatum HOM05D007331 ORTHO05D009273 3.7e-51 205.3 126 77.0
FAN10G2274 Fragaria x ananassa HOM05D007331 ORTHO05D009273 4.8e-51 204.9 102 97.1
FAN10G3896 Fragaria x ananassa HOM05D007331 ORTHO05D009273 4.8e-51 204.9 102 97.1
Carub.0006s2210 Capsella rubella HOM05D007331 ORTHO05D009273 1.4e-50 203.4 138 70.3
Dinv35349 Davidia involucrata HOM05D007331 ORTHO05D009273 1.4e-50 203.4 149 71.8
Psat5g075920 Pisum sativum HOM05D007331 ORTHO05D009273 1.8e-50 203.0 128 75.0
Ca_16722_v3 Cicer arietinum L. HOM05D007331 ORTHO05D009273 1.2e-49 200.3 168 62.5
Duzib068G0233 Durio zibethinus HOM05D007331 ORTHO05D009273 7.7e-49 197.6 139 67.6
Lalb_Chr08g0240101 Lupinus albus HOM05D007331 ORTHO05D009273 7.7e-49 197.6 123 76.4
Phvul.009G050900 Phaseolus vulgaris HOM05D007331 ORTHO05D009273 1.7e-48 196.4 168 59.5
Glyma.06G130800 Glycine max HOM05D007331 ORTHO05D009273 2.9e-48 195.7 168 61.3
MSTRG.8644 Avicennia marina HOM05D007331 ORTHO05D009273 8.5e-48 194.1 137 70.8
Glyma.04G234000 Glycine max HOM05D007331 ORTHO05D009273 1.1e-47 193.7 168 59.5
PSO063G7177 Papaver somniferum HOM05D007331 ORTHO05D009273 1.1e-47 193.7 162 64.8
CDE04G0075 Ceratophyllum demersum HOM05D007331 ORTHO05D009273 1.4e-47 193.4 156 62.2
Cpa.g.sc3.102 Carica papaya HOM05D007331 ORTHO05D009273 5.5e-47 191.4 112 80.4
PSO170G4979 Papaver somniferum HOM05D007331 ORTHO05D009273 9.4e-47 190.7 162 64.2
Nitab4.5_0005491g0010 Nicotiana tabacum HOM05D007331 ORTHO05D009273 3.6e-46 188.7 165 60.6
Migut.F00197 Erythranthe guttata HOM05D007331 ORTHO05D009273 6.1e-46 188.0 163 62.6
PGSC0003DMG400018546 Solanum tuberosum HOM05D007331 ORTHO05D009273 6.1e-46 188.0 165 60.0
Solyc03g082970.4 Solanum lycopersicum HOM05D007331 ORTHO05D009273 1.0e-45 187.2 165 60.0
Cc02_g01360 Coffea canephora HOM05D007331 ORTHO05D009273 1.4e-45 186.8 148 66.2
Thecc.03G201300 Theobroma cacao HOM05D007331 ORTHO05D009273 1.4e-45 186.8 112 75.9
DCAR_014548 Daucus carota HOM05D007331 ORTHO05D009273 3.0e-45 185.7 126 69.0
Lj1g0000536 Lotus japonicus HOM05D007331 ORTHO05D009273 3.9e-45 185.3 155 60.0
ATR0730G104 Amborella trichopoda HOM05D007331 ORTHO05D009273 5.1e-45 184.9 143 64.3
TPR.G33621 Trifolium pratense HOM05D007331 ORTHO05D009273 5.1e-45 184.9 164 58.5
CAN.G481.32 Capsicum annuum HOM05D007331 ORTHO05D009273 8.8e-45 184.1 169 60.9
Sopen03g022780 Solanum pennellii HOM05D007331 ORTHO05D009273 2.0e-44 183.0 167 61.7
Aqoxy5G04308 Aquilegia oxysepala HOM05D007331 ORTHO05D009273 2.8e-43 179.1 159 62.3
Nn5g27567 Nelumbo nucifera HOM05D007331 ORTHO05D009273 3.7e-43 178.7 112 78.6
TWI39G0006 Tripterygium wilfordii HOM05D007331 ORTHO05D009273 1.1e-42 177.2 135 68.1
AUR62006072 Chenopodium quinoa HOM05D007331 ORTHO05D009273 1.8e-42 176.4 125 72.0
CSS0016118 Camellia sinensis var. sinensis HOM05D007331 ORTHO05D009273 3.5e-41 172.2 107 77.6
Peaxi162Scf00740g00023 Petunia axillaris HOM05D007331 ORTHO05D009273 7.7e-41 171.0 108 75.9
SGA_v2.0_scaffold192G40527 Striga asiatica HOM05D007331 ORTHO05D009273 1.5e-39 166.8 167 54.5
VMungo1309G2222 Vigna mungo HOM05D007331 ORTHO05D009273 1.5e-39 166.8 155 58.7
arahy.Tifrunner.gnm1.ann1.E13FL8 Arachis hypogaea HOM05D007331 ORTHO05D009273 1.9e-39 166.4 156 55.1
Aa31LG11G3570 Aethionema arabicum HOM05D007331 ORTHO05D009273 3.2e-39 165.6 107 73.8
HPP92_020186 Vanilla planifolia HOM05D007331 ORTHO05D009273 8.0e-38 161.0 125 62.4
arahy.Tifrunner.gnm1.ann1.US9W38 Arachis hypogaea HOM05D007331 ORTHO05D009273 3.0e-37 159.1 175 50.3
AUR62035555 Chenopodium quinoa HOM05D007331 ORTHO05D009273 6.7e-37 157.9 111 72.1
unitig_92.g28248 Utricularia gibba HOM05D007331 ORTHO05D009273 1.1e-36 157.1 109 67.0
HanXRQChr07g0206431 Helianthus annuus HOM05D007331 ORTHO05D009273 1.5e-36 156.8 145 55.2
Actinidia34232 Actinidia chinensis HOM05D007331 ORTHO05D009273 2.6e-36 156.0 100 76.0
Lsat_1_v5_gn_2_136240 Lactuca sativa HOM05D007331 ORTHO05D009273 2.6e-36 156.0 112 66.1
COL.COLO4_06879 Corchorus olitorius HOM05D007331 ORTHO05D009273 3.3e-36 155.6 105 70.5
ECA238G3436 Erigeron canadensis HOM05D007331 ORTHO05D009273 5.7e-36 154.8 112 65.2
Ah.07g205440 Amaranthus hybridus HOM05D007331 ORTHO05D009273 3.7e-35 152.1 112 67.9
Hund11645 Selenicereus undatus HOM05D007331 ORTHO05D009273 4.8e-35 151.8 114 65.8
Nitab4.5_0000548g0030 Nicotiana tabacum HOM05D007331 ORTHO05D008325 8.2e-35 151.0 143 58.0
Zm00001eb361120 Zea mays HOM05D007331 ORTHO05D009273 1.1e-34 150.6 125 58.4
Zm00001eb155420 Zea mays HOM05D007331 ORTHO05D009273 1.4e-34 150.2 122 59.8
EL10Ac3g05257 Beta vulgaris HOM05D007331 ORTHO05D009273 5.3e-34 148.3 118 62.7
Os01g0705300 Oryza sativa ssp. japonica HOM05D007331 ORTHO05D009273 7.0e-34 147.9 136 56.6
Rhsim03G0210700 Rhododendron simsii HOM05D007331 ORTHO05D009273 2.2e-32 142.9 161 50.9
Oeu023663.2 Olea europaea HOM05D007331 ORTHO05D009273 2.1e-30 136.3 131 58.8
MBI06_g33738_MAGBIO Magnolia biondii HOM05D007331 ORTHO05D009273 1.8e-29 133.3 98 70.4
vmacro06396 Vaccinium macrocarpon HOM05D007331 ORTHO05D009273 1.5e-28 130.2 97 62.9
Lj3P902T29 Lonicera japonica HOM05D007331 ORTHO05D009273 1.7e-24 116.7 85 63.5
Thecc.05G118900 Theobroma cacao HOM05D007331 ORTHO05D009273 3.1e-18 95.9 122 42.6
Actinidia08666 Actinidia chinensis HOM05D007331 ORTHO05D009273 4.4e-12 75.5 81 54.3
arahy.Tifrunner.gnm1.ann1.2NJ5KY Arachis hypogaea HOM05D007331 ORTHO05D009273 1.1e-10 70.9 69 55.1
Mapoly0073s0014 Marchantia polymorpha HOM05D007331 ORTHO05D009273 7.0e-10 68.2 111 37.8
AagrBONN_evm.TU.Sc2ySwM_368.2672 Anthoceros agrestis HOM05D007331 ORTHO05D009273 2.3e-08 63.2 111 31.5
A02p40720 Brassica napus HOM05D007331 ORTHO05D009273 2.5e-07 59.7 42 64.3
BraA02t09018Z Brassica rapa HOM05D007331 ORTHO05D009273 2.5e-07 59.7 42 64.3
Pp3c22_3530 Physcomitrium patens HOM05D007331 ORTHO05D009273 6.2e-06 55.1 95 41.1


User provided reference genes

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