Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_7g14300 Fragaria vesca HOM05D005648 ORTHO05D007357 4.6e-245 850.9 462 100.0
FAN06G4900 Fragaria x ananassa HOM05D005648 ORTHO05D007357 4.8e-242 840.9 462 98.9
FAN06G1011 Fragaria x ananassa HOM05D005648 ORTHO05D007357 5.1e-236 820.8 454 98.9
FAN10G1032 Fragaria x ananassa HOM05D005648 ORTHO05D007357 3.3e-227 791.6 454 94.3
FAN01G1827 Fragaria x ananassa HOM05D005648 ORTHO05D007357 1.2e-216 756.5 454 91.4
RcHm_v2.0_Chr1g0355291 Rosa chinensis HOM05D005648 ORTHO05D007357 2.5e-198 695.7 466 84.1
Prupe.2G170800 Prunus persica HOM05D005648 ORTHO05D007357 3.1e-132 476.1 470 63.8
MD01G1061000 Malus domestica HOM05D005648 ORTHO05D007357 9.6e-118 427.9 470 59.8
QL08p048767 Quercus lobata HOM05D005648 ORTHO05D007357 1.5e-107 394.0 466 54.5
MD07G1136800 Malus domestica HOM05D005648 ORTHO05D007357 7.9e-104 381.7 436 58.0
Thecc.01G358800 Theobroma cacao HOM05D005648 ORTHO05D007357 1.3e-101 374.4 467 50.1
Potri.002G160100 Populus trichocarpa HOM05D005648 ORTHO05D007357 3.1e-100 369.8 467 51.2
Sabra14G0061500 Salix brachista HOM05D005648 ORTHO05D007357 6.9e-100 368.6 481 51.4
FAN03G1082 Fragaria x ananassa HOM05D005648 ORTHO05D007357 2.6e-99 366.7 208 96.2
Potri.014G084800 Populus trichocarpa HOM05D005648 ORTHO05D007357 1.3e-98 364.4 467 51.8
Haze_07444 Corylus avellana HOM05D005648 ORTHO05D007357 1.7e-98 364.0 433 53.8
COL.COLO4_12714 Corchorus olitorius HOM05D005648 ORTHO05D007357 2.9e-98 363.2 432 51.9
Duzib133G0061 Durio zibethinus HOM05D005648 ORTHO05D007357 3.2e-97 359.8 475 47.6
Manes.05G034000 Manihot esculenta HOM05D005648 ORTHO05D007357 3.2e-97 359.8 467 51.8
Gorai.004G158700 Gossypium raimondii HOM05D005648 ORTHO05D007357 6.7e-95 352.1 468 47.9
Manes.01G256501 Manihot esculenta HOM05D005648 ORTHO05D007357 7.4e-94 348.6 471 49.7
Gohir.A08G131300 Gossypium hirsutum HOM05D005648 ORTHO05D007357 9.7e-94 348.2 468 47.9
TWI23G0553 Tripterygium wilfordii HOM05D005648 ORTHO05D007357 6.9e-92 342.0 468 50.0
Oeu010615.1 Olea europaea HOM05D005648 ORTHO05D007357 6.1e-88 328.9 481 45.7
CiPaw.11G030900 Carya illinoinensis HOM05D005648 ORTHO05D007357 4.4e-86 322.8 467 48.2
Gohir.D08G152800 Gossypium hirsutum HOM05D005648 ORTHO05D007357 6.9e-84 315.5 431 46.4
PGR031G0771 Punica granatum HOM05D005648 ORTHO05D007357 2.6e-83 313.5 478 46.0
MSTRG.20835 Avicennia marina HOM05D005648 ORTHO05D007357 3.4e-83 313.2 476 43.9
Migut.B01757 Erythranthe guttata HOM05D005648 ORTHO05D007357 4.5e-83 312.8 482 44.0
Dinv32486 Davidia involucrata HOM05D005648 ORTHO05D007357 9.4e-81 305.1 466 45.7
TAR375G0141 Trochodendron aralioides HOM05D005648 ORTHO05D007357 9.4e-81 305.1 473 45.2
Carub.0001s0053 Capsella rubella HOM05D005648 ORTHO05D007357 1.7e-77 294.3 473 46.3
Glyma.07G070400 Glycine max HOM05D005648 ORTHO05D007357 2.8e-77 293.5 464 43.8
GSVIVG01026935001 Vitis vinifera HOM05D005648 ORTHO05D007357 5.3e-76 289.3 468 45.7
Cfa019074 Carpinus fangiana HOM05D005648 ORTHO05D007357 1.2e-75 288.1 406 48.3
Sp1g00620 Schrenkiella parvula HOM05D005648 ORTHO05D007357 7.7e-75 285.4 466 43.1
Dinv43819 Davidia involucrata HOM05D005648 ORTHO05D007357 2.2e-74 283.9 473 44.0
Atru.chr5.500 Acer truncatum HOM05D005648 ORTHO05D007357 2.9e-74 283.5 398 47.5
Lj3g0021061 Lotus japonicus HOM05D005648 ORTHO05D007357 6.5e-74 282.3 471 45.0
Thhalv10007771m.g Eutrema salsugineum HOM05D005648 ORTHO05D007357 8.5e-74 282.0 468 43.8
Sed0027842 Sechium edule HOM05D005648 ORTHO05D007357 1.9e-73 280.8 478 40.6
THA.LOC104825838 Tarenaya hassleriana HOM05D005648 ORTHO05D007357 5.5e-73 279.3 467 41.1
VMungo0331G0956 Vigna mungo HOM05D005648 ORTHO05D007357 9.4e-73 278.5 467 43.0
AT1G01690 Arabidopsis thaliana HOM05D005648 ORTHO05D007357 5.2e-71 272.7 480 45.6
Rhsim01G0157500 Rhododendron simsii HOM05D005648 ORTHO05D007357 5.2e-71 272.7 439 44.0
AL1G10680 Arabidopsis lyrata HOM05D005648 ORTHO05D007357 6.7e-71 272.3 470 44.3
Cpa.g.sc11.6 Carica papaya HOM05D005648 ORTHO05D007357 2.2e-69 267.3 305 53.4
Ciclev10024354m.g Citrus clementina HOM05D005648 ORTHO05D007357 4.1e-68 263.1 259 61.0
Eucgr.D02293 Eucalyptus grandis HOM05D005648 ORTHO05D007357 1.2e-67 261.5 253 59.7
Phvul.010G099300 Phaseolus vulgaris HOM05D005648 ORTHO05D007357 7.7e-67 258.8 463 42.3
CARHR000670 Cardamine hirsuta HOM05D005648 ORTHO05D007357 1.0e-66 258.5 474 41.8
TAR629G3222 Trochodendron aralioides HOM05D005648 ORTHO05D007357 1.0e-66 258.5 317 53.6
Aqoxy7G00304 Aquilegia oxysepala HOM05D005648 ORTHO05D007357 1.3e-66 258.1 474 42.6
Nn1g01539 Nelumbo nucifera HOM05D005648 ORTHO05D007357 1.7e-66 257.7 436 43.3
Lsat_1_v5_gn_4_36080 Lactuca sativa HOM05D005648 ORTHO05D007357 6.5e-66 255.8 488 40.4
Aa31LG1G11030 Aethionema arabicum HOM05D005648 ORTHO05D007357 5.5e-65 252.7 477 41.3
Glyma.03G008900 Glycine max HOM05D005648 ORTHO05D007357 7.2e-65 252.3 442 41.4
arahy.Tifrunner.gnm1.ann1.B5LD0B Arachis hypogaea HOM05D005648 ORTHO05D007357 1.6e-64 251.1 462 42.0
DCAR_006931 Daucus carota HOM05D005648 ORTHO05D007357 1.6e-64 251.1 479 40.7
Peaxi162Scf00020g00424 Petunia axillaris HOM05D005648 ORTHO05D007357 2.7e-64 250.4 525 37.5
BraA10t42311Z Brassica rapa HOM05D005648 ORTHO05D007357 4.0e-63 246.5 464 39.9
Nitab4.5_0006762g0020 Nicotiana tabacum HOM05D005648 ORTHO05D007357 1.2e-62 245.0 464 39.0
BolC7t43677H Brassica oleracea HOM05D005648 ORTHO05D007357 9.8e-62 241.9 486 38.7
ECA234G0615 Erigeron canadensis HOM05D005648 ORTHO05D007357 2.2e-61 240.7 467 38.3
Psat4g155800 Pisum sativum HOM05D005648 ORTHO05D007357 2.8e-61 240.4 288 53.5
MBI18_g45368_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 1.1e-60 238.4 258 56.2
BcaC06g34230 Brassica carinata HOM05D005648 ORTHO05D007357 1.4e-60 238.0 484 38.4
Cc02_g38050 Coffea canephora HOM05D005648 ORTHO05D007357 1.8e-60 237.7 468 40.0
Sopen01g038460 Solanum pennellii HOM05D005648 ORTHO05D007357 2.4e-60 237.3 518 37.3
A10p00320 Brassica napus HOM05D003351 ORTHO05D003806 3.1e-60 236.9 454 40.1
CAN.G78.81 Capsicum annuum HOM05D005648 ORTHO05D007357 4.1e-60 236.5 474 40.3
Solyc01g094650.4 Solanum lycopersicum HOM05D005648 ORTHO05D007357 1.2e-59 235.0 518 37.1
BraA06t27356Z Brassica rapa HOM05D005648 ORTHO05D007357 1.6e-59 234.6 460 39.8
BolC5t28826H Brassica oleracea HOM05D005648 ORTHO05D007357 3.5e-59 233.4 464 38.8
A06p44840 Brassica napus HOM05D005648 ORTHO05D007357 7.7e-59 232.3 437 40.5
HanXRQChr16g0522761 Helianthus annuus HOM05D005648 ORTHO05D007357 1.3e-58 231.5 439 39.6
Medtr8g030730 Medicago truncatula HOM05D005648 ORTHO05D007357 3.8e-58 229.9 450 39.8
SGA_v2.0_scaffold4G02313 Striga asiatica HOM05D005648 ORTHO05D007357 6.5e-58 229.2 442 40.0
Duzib133G1405 Durio zibethinus HOM05D005648 ORTHO05D007357 1.9e-57 227.6 234 58.5
C07p31360 Brassica napus HOM05D005648 ORTHO05D008650 2.5e-57 227.3 455 38.5
TPR.G10304 Trifolium pratense HOM05D005648 ORTHO05D007357 5.5e-57 226.1 419 41.1
C05p00330 Brassica napus HOM05D003351 ORTHO05D003806 2.8e-56 223.8 455 38.9
AUR62004360 Chenopodium quinoa HOM05D005648 ORTHO05D007357 3.6e-56 223.4 458 38.2
Lalb_Chr17g0339581 Lupinus albus HOM05D005648 ORTHO05D007357 4.7e-56 223.0 446 40.1
arahy.Tifrunner.gnm1.ann1.SJPY5G Arachis hypogaea HOM05D005648 ORTHO05D007357 5.2e-55 219.5 237 59.1
Rhsim01G0157000 Rhododendron simsii HOM05D005648 ORTHO05D007357 6.8e-55 219.2 445 38.2
Actinidia12702 Actinidia chinensis HOM05D005648 ORTHO05D007357 2.8e-53 213.8 255 51.8
MELO3C006108.2 Cucumis melo HOM05D005648 ORTHO05D007357 1.1e-52 211.8 262 47.7
Sc23g0002870 Simmondsia chinensis HOM05D005648 ORTHO05D007357 5.4e-52 209.5 475 38.7
Actinidia33418 Actinidia chinensis HOM05D005648 ORTHO05D007357 1.3e-50 204.9 394 40.9
ClCG05G001510 Citrullus lanatus HOM05D005648 ORTHO05D007357 3.8e-50 203.4 424 37.7
HPP92_008491 Vanilla planifolia HOM05D005648 ORTHO05D007357 5.6e-49 199.5 479 34.9
ATR0680G381 Amborella trichopoda HOM05D005648 ORTHO05D007357 9.5e-49 198.7 471 35.5
MBI18_g44363_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 6.1e-48 196.1 274 48.2
Peaxi162Scf00020g00041 Petunia axillaris HOM05D005648 ORTHO05D007357 8.0e-48 195.7 464 35.6
CsaV3_3G008890 Cucumis sativus L. HOM05D003539 ORTHO05D004111 5.2e-47 193.0 432 35.0
Lalb_Chr10g0096911 Lupinus albus HOM05D005648 ORTHO05D007357 5.2e-47 193.0 261 52.1
Nitab4.5_0000583g0110 Nicotiana tabacum HOM05D005648 ORTHO05D007357 5.7e-46 189.5 375 38.7
arahy.Tifrunner.gnm1.ann1.79VNNQ Arachis hypogaea HOM05D005648 ORTHO05D007357 9.8e-46 188.7 280 47.5
CDE04G3514 Ceratophyllum demersum HOM05D005648 ORTHO05D007357 8.3e-45 185.7 472 35.4
Ca_23631_v3 Cicer arietinum L. HOM05D005648 ORTHO05D007357 1.8e-44 184.5 521 34.0
EL10Ac7g16797 Beta vulgaris HOM05D005648 ORTHO05D007357 4.1e-44 183.3 458 33.8
BcaC06g31348 Brassica carinata HOM05D005648 ORTHO05D007357 9.2e-44 182.2 479 36.3
PSO478G0111 Papaver somniferum HOM05D005648 ORTHO05D007357 4.6e-43 179.9 471 33.8
PGSC0003DMG400000173 Solanum tuberosum HOM05D005648 ORTHO05D007357 2.0e-38 164.5 196 55.1
Ah.05g180590 Amaranthus hybridus HOM05D005648 ORTHO05D007357 2.7e-35 154.1 221 48.0
Zm00001eb404350 Zea mays HOM05D005648 ORTHO05D007357 1.2e-32 145.2 288 37.8
SHI13451 Sapria himalayana HOM05D005648 ORTHO05D007357 3.6e-32 143.7 312 36.2
Zm00001eb000540 Zea mays HOM05D005648 ORTHO05D007357 5.2e-31 139.8 288 38.2
CSS0007131 Camellia sinensis var. sinensis HOM05D005648 ORTHO05D007357 3.4e-30 137.1 357 33.1
FAN10G0802 Fragaria x ananassa HOM05D005648 ORTHO05D007357 5.8e-30 136.3 72 100.0
QL08p048682 Quercus lobata HOM05D005648 ORTHO05D007357 1.6e-27 128.3 115 63.5
vmacro20940 Vaccinium macrocarpon HOM05D005648 ORTHO05D007357 4.6e-27 126.7 142 59.9
unitig_26.g9738 Utricularia gibba HOM05D005648 ORTHO05D007357 1.0e-26 125.6 274 37.6
AUR62022570 Chenopodium quinoa HOM05D005648 ORTHO05D007357 2.5e-25 120.9 380 29.2
BcaB03g13607 Brassica carinata HOM05D003351 ORTHO05D003806 5.2e-23 113.2 465 29.0
Os03g0106300 Oryza sativa ssp. japonica HOM05D005648 ORTHO05D007357 5.2e-23 113.2 510 31.0
arahy.Tifrunner.gnm1.ann1.QHU48Z Arachis hypogaea HOM05D005648 ORTHO05D007357 8.9e-23 112.5 140 50.0
MBI18_g40590_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 3.4e-22 110.5 288 33.0
MBI06_g29680_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 8.4e-21 105.9 134 51.5
MBI01_g12685_MAGBIO Magnolia biondii HOM05D000532 ORTHO05D007357 2.3e-18 97.8 108 50.0
MBI18_g42710_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 8.7e-18 95.9 74 63.5
CSS0016999 Camellia sinensis var. sinensis HOM05D005648 ORTHO05D007357 1.9e-17 94.7 85 67.1
MBI17_g41096_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 2.8e-16 90.9 68 63.2
MBI06_g27427_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 1.2e-14 85.5 71 63.4
CSS0009989 Camellia sinensis var. sinensis HOM05D005648 ORTHO05D007357 2.6e-14 84.3 103 48.5
SHI13452 Sapria himalayana HOM05D005648 ORTHO05D007357 4.9e-13 80.1 104 57.7
SalBow3G1978 Salvia bowleyana HOM05D005648 ORTHO05D007357 1.2e-11 75.5 75 60.0
Sabra02G0127100 Salix brachista HOM05D005648 ORTHO05D007357 1.6e-11 75.1 160 33.8
MBI19_g11759_MAGBIO Magnolia biondii HOM05D000532 ORTHO05D002414 3.0e-10 70.9 69 50.7
Eucgr.D02400 Eucalyptus grandis HOM05D005648 ORTHO05D029324 5.1e-10 70.1 143 36.4
Ciclev10024524m.g Citrus clementina HOM05D005648 ORTHO05D007357 1.1e-09 68.9 77 51.9
Eucgr.D02411 Eucalyptus grandis HOM05D005648 ORTHO05D029324 1.9e-09 68.2 144 37.5
vmacro20941 Vaccinium macrocarpon HOM05D005648 ORTHO05D007357 8.1e-08 62.8 134 33.6
MBI12_g03930_MAGBIO Magnolia biondii HOM05D000084 ORTHO05D014274 3.4e-06 57.4 65 58.5
Eucgr.D02408 Eucalyptus grandis HOM05D005648 ORTHO05D029324 4.5e-06 57.0 100 41.0


User provided reference genes

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