Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_6g33270 Fragaria vesca HOM05D006300 ORTHO05D007623 8.3e-147 523.9 299 100.0
FAN14G0371 Fragaria x ananassa HOM05D006300 ORTHO05D007623 8.3e-147 523.9 299 100.0
FAN02G1261 Fragaria x ananassa HOM05D006300 ORTHO05D007623 1.1e-133 480.3 287 89.2
FAN05G1138 Fragaria x ananassa HOM05D006300 ORTHO05D007623 3.1e-133 478.8 284 94.4
RcHm_v2.0_Chr2g0142971 Rosa chinensis HOM05D006300 ORTHO05D007623 4.9e-115 418.3 300 82.3
FAN09G0301 Fragaria x ananassa HOM05D006300 ORTHO05D007623 5.8e-108 394.8 274 81.4
MD17G1174400 Malus domestica HOM05D006300 ORTHO05D007623 4.2e-82 308.9 332 60.2
Prupe.3G050100 Prunus persica HOM05D006300 ORTHO05D007623 9.4e-82 307.8 331 57.1
QL05p012743 Quercus lobata HOM05D006300 ORTHO05D007623 4.8e-70 268.9 188 77.1
Duzib192G0510 Durio zibethinus HOM05D006300 ORTHO05D007623 1.5e-66 257.3 199 69.3
Gohir.D03G056300 Gossypium hirsutum HOM05D006300 ORTHO05D007623 1.9e-66 256.9 181 74.0
Gorai.003G059300 Gossypium raimondii HOM05D006300 ORTHO05D007623 1.9e-66 256.9 181 74.0
CANSAT56G1450 Cannabis sativa HOM05D006300 ORTHO05D007623 3.2e-66 256.1 180 75.0
Dinv30382 Davidia involucrata HOM05D006300 ORTHO05D007623 7.2e-66 255.0 196 70.9
Thecc.06G111200 Theobroma cacao HOM05D006300 ORTHO05D007623 1.2e-65 254.2 178 74.2
CiPaw.01G225300 Carya illinoinensis HOM05D006300 ORTHO05D007623 6.1e-65 251.9 335 51.0
GSVIVG01016850001 Vitis vinifera HOM05D006300 ORTHO05D007623 8.0e-65 251.5 199 69.8
COL.COLO4_30656 Corchorus olitorius HOM05D006300 ORTHO05D007623 1.0e-64 251.1 189 69.8
Gohir.A02G115200 Gossypium hirsutum HOM05D006300 ORTHO05D007623 2.3e-64 250.0 181 71.8
Actinidia21757 Actinidia chinensis HOM05D006300 ORTHO05D007623 6.7e-64 248.4 180 71.7
Manes.11G026800 Manihot esculenta HOM05D006300 ORTHO05D007623 6.7e-64 248.4 177 72.9
PGR102G2043 Punica granatum HOM05D006300 ORTHO05D007623 6.7e-64 248.4 197 69.5
Potri.003G038600 Populus trichocarpa HOM05D006300 ORTHO05D007623 8.8e-64 248.1 189 69.8
Rhsim08G0233100 Rhododendron simsii HOM05D006300 ORTHO05D007623 4.4e-63 245.7 174 75.9
Gohir.D10G061000 Gossypium hirsutum HOM05D006300 ORTHO05D007623 1.3e-62 244.2 189 67.7
Dinv37916 Davidia involucrata HOM05D006300 ORTHO05D007623 2.2e-62 243.4 177 73.4
Duzib160G0060 Durio zibethinus HOM05D006300 ORTHO05D007623 2.2e-62 243.4 181 72.4
Manes.04G139300 Manihot esculenta HOM05D006300 ORTHO05D007623 2.2e-62 243.4 188 70.2
CiPaw.02G140400 Carya illinoinensis HOM05D006300 ORTHO05D007623 6.3e-62 241.9 177 70.6
arahy.Tifrunner.gnm1.ann1.X9C73S Arachis hypogaea HOM05D006300 ORTHO05D007623 8.2e-62 241.5 186 71.5
Duzib235G0903 Durio zibethinus HOM05D006300 ORTHO05D007623 8.2e-62 241.5 189 69.8
Gohir.A10G059500 Gossypium hirsutum HOM05D006300 ORTHO05D007623 8.2e-62 241.5 189 67.2
CARHR018270 Cardamine hirsuta HOM05D006300 ORTHO05D007623 1.4e-61 240.7 185 67.0
CsaV3_7G034830 Cucumis sativus L. HOM05D006300 ORTHO05D007623 2.4e-61 240.0 193 67.4
MELO3C024394.2 Cucumis melo HOM05D006300 ORTHO05D007623 3.1e-61 239.6 193 67.4
Sp1g15770 Schrenkiella parvula HOM05D006300 ORTHO05D007623 7.0e-61 238.4 196 63.3
TAR636G0696 Trochodendron aralioides HOM05D006300 ORTHO05D007623 7.0e-61 238.4 196 68.9
arahy.Tifrunner.gnm1.ann1.F4I7X2 Arachis hypogaea HOM05D006300 ORTHO05D007623 2.0e-60 236.9 186 71.0
AT1G17665 Arabidopsis thaliana HOM05D006300 ORTHO05D007623 2.7e-60 236.5 199 62.3
TAR383G0464 Trochodendron aralioides HOM05D006300 ORTHO05D007623 2.7e-60 236.5 182 70.3
BcaB07g34023 Brassica carinata HOM05D006300 ORTHO05D007623 4.5e-60 235.7 185 65.4
TAR624G0799 Trochodendron aralioides HOM05D006300 ORTHO05D007623 4.5e-60 235.7 176 71.6
BcaC05g25688 Brassica carinata HOM05D006300 ORTHO05D007623 7.7e-60 235.0 187 64.7
C05p16080 Brassica napus HOM05D006300 ORTHO05D007623 7.7e-60 235.0 187 64.7
BolC5t30308H Brassica oleracea HOM05D006300 ORTHO05D007623 7.7e-60 235.0 187 64.7
BraA06t24508Z Brassica rapa HOM05D006300 ORTHO05D007623 1.3e-59 234.2 185 66.5
Thhalv10008108m.g Eutrema salsugineum HOM05D006300 ORTHO05D007623 1.3e-59 234.2 186 66.1
AL1G29990 Arabidopsis lyrata HOM05D006300 ORTHO05D007623 1.7e-59 233.8 185 65.4
Medtr2g100100 Medicago truncatula HOM05D006300 ORTHO05D007623 2.9e-59 233.0 194 69.1
PGR102G2710 Punica granatum HOM05D006300 ORTHO05D007623 2.9e-59 233.0 197 66.0
Ah.15g094170 Amaranthus hybridus HOM05D006300 ORTHO05D007623 3.8e-59 232.6 171 71.3
A06p13560 Brassica napus HOM05D006300 ORTHO05D007623 5.0e-59 232.3 175 68.0
Gorai.011G065200 Gossypium raimondii HOM05D006300 ORTHO05D007623 5.0e-59 232.3 177 67.8
Carub.0001s1740 Capsella rubella HOM05D006300 ORTHO05D007623 8.5e-59 231.5 185 65.4
Glyma.15G023900 Glycine max HOM05D006300 ORTHO05D007623 1.1e-58 231.1 188 68.6
THA.LOC104812213 Tarenaya hassleriana HOM05D006300 ORTHO05D007623 1.5e-58 230.7 198 64.1
Lsat_1_v5_gn_4_95241 Lactuca sativa HOM05D006300 ORTHO05D007623 1.9e-58 230.3 170 72.4
Sopen03g040370 Solanum pennellii HOM05D006300 ORTHO05D007623 1.9e-58 230.3 194 66.0
Solyc03g121560.3 Solanum lycopersicum HOM05D006300 ORTHO05D007623 2.5e-58 229.9 194 65.5
Sabra03G0025100 Salix brachista HOM05D006300 ORTHO05D007623 1.6e-57 227.3 236 57.2
CAN.G1389.16 Capsicum annuum HOM05D006300 ORTHO05D007623 2.7e-57 226.5 194 63.9
SalBow6G0902 Salvia bowleyana HOM05D006300 ORTHO05D007623 4.7e-57 225.7 164 72.0
HanXRQChr09g0276431 Helianthus annuus HOM05D006300 ORTHO05D007623 8.0e-57 224.9 171 71.3
Migut.I01022 Erythranthe guttata HOM05D006300 ORTHO05D007623 1.0e-56 224.6 174 69.0
Nn6g35476 Nelumbo nucifera HOM05D006300 ORTHO05D007623 1.0e-56 224.6 171 71.3
Phvul.005G159900 Phaseolus vulgaris HOM05D006300 ORTHO05D007623 1.0e-56 224.6 185 67.6
MBI04_g34125_MAGBIO Magnolia biondii HOM05D006300 ORTHO05D007623 2.3e-56 223.4 176 69.3
DCAR_007620 Daucus carota HOM05D006300 ORTHO05D007623 3.0e-56 223.0 164 71.3
Glyma.13G350600 Glycine max HOM05D006300 ORTHO05D007623 3.0e-56 223.0 180 68.9
vmacro18787 Vaccinium macrocarpon HOM05D006300 ORTHO05D007623 3.0e-56 223.0 162 74.1
Lalb_Chr24g0396361 Lupinus albus HOM05D006300 ORTHO05D007623 4.0e-56 222.6 192 66.1
Cc04_g01980 Coffea canephora HOM05D006300 ORTHO05D007623 5.2e-56 222.2 171 67.8
Nn8g38867 Nelumbo nucifera HOM05D006300 ORTHO05D007623 5.2e-56 222.2 169 71.0
CDE04G2687 Ceratophyllum demersum HOM05D006300 ORTHO05D007623 4.4e-55 219.2 192 67.2
MBI01_g01269_MAGBIO Magnolia biondii HOM05D006300 ORTHO05D007623 4.4e-55 219.2 188 65.4
Aa31LG7G2500 Aethionema arabicum HOM05D006300 ORTHO05D007623 5.7e-55 218.8 199 60.8
Haze_15947 Corylus avellana HOM05D006300 ORTHO05D007623 5.7e-55 218.8 361 46.0
Psat4g199680 Pisum sativum HOM05D006300 ORTHO05D007623 7.5e-55 218.4 176 68.2
Hund20857 Selenicereus undatus HOM05D006300 ORTHO05D007623 1.3e-54 217.6 236 55.1
Lj3g0013508 Lotus japonicus HOM05D006300 ORTHO05D007623 4.8e-54 215.7 182 67.0
Aqoxy7G01215 Aquilegia oxysepala HOM05D006300 ORTHO05D007623 8.3e-54 214.9 199 61.8
TPR.G6530 Trifolium pratense HOM05D006300 ORTHO05D007623 1.8e-53 213.8 181 65.7
Medtr8g016260 Medicago truncatula HOM05D006300 ORTHO05D007623 9.1e-53 211.5 193 62.2
CDE06G2767 Ceratophyllum demersum HOM05D006300 ORTHO05D007623 2.7e-52 209.9 168 70.8
MSTRG.10986 Avicennia marina HOM05D006300 ORTHO05D007623 3.5e-52 209.5 176 64.8
ECA232G1041 Erigeron canadensis HOM05D000140 ORTHO05D000087 3.5e-52 209.5 172 67.4
AUR62038132 Chenopodium quinoa HOM05D000073 ORTHO05D000033 4.5e-52 209.1 161 68.3
VMungo1080G1020 Vigna mungo HOM05D006300 ORTHO05D007623 7.7e-52 208.4 220 58.2
PSO210G2046 Papaver somniferum HOM05D006300 ORTHO05D007623 2.9e-51 206.5 170 65.9
PSO210G0359 Papaver somniferum HOM05D006300 ORTHO05D007623 3.8e-51 206.1 170 65.3
Nitab4.5_0001295g0030 Nicotiana tabacum HOM05D006300 ORTHO05D007623 5.2e-48 195.7 170 64.7
Ciclev10025783m.g Citrus clementina HOM05D006300 ORTHO05D007623 1.2e-47 194.5 198 57.1
Mapoly0001s0383 Marchantia polymorpha HOM05D006300 ORTHO05D007623 1.2e-47 194.5 168 63.7
AagrBONN_evm.TU.Sc2ySwM_228.500 Anthoceros agrestis HOM05D006300 ORTHO05D007623 1.4e-45 187.6 169 60.4
Pp3c7_7340 Physcomitrium patens HOM05D006300 ORTHO05D007623 4.1e-45 186.0 168 61.9
SGA_v2.0_scaffold127G34049 Striga asiatica HOM05D006300 ORTHO05D007623 7.0e-45 185.3 176 60.8
Ca_28052_v3 Cicer arietinum L. HOM05D006300 ORTHO05D007623 2.0e-44 183.7 145 69.0
Ca_30533_v3 Cicer arietinum L. HOM05D006300 ORTHO05D007623 2.0e-44 183.7 145 69.0
Atru.chr1.3720 Acer truncatum HOM05D001008 ORTHO05D003146 7.8e-44 181.8 139 68.3
Peaxi162Scf00038g01529 Petunia axillaris HOM05D006300 ORTHO05D007623 5.0e-43 179.1 142 69.0
ClCG09G000650 Citrullus lanatus HOM05D006300 ORTHO05D007623 6.6e-43 178.7 136 69.1
ATR0026G017 Amborella trichopoda HOM05D006300 ORTHO05D007623 1.9e-42 177.2 177 55.9
Nitab4.5_0007429g0010 Nicotiana tabacum HOM05D006300 ORTHO05D007623 5.2e-40 169.1 271 46.1
Oeu039964.1 Olea europaea HOM05D006300 ORTHO05D007623 7.5e-39 165.2 124 68.5
TPR.G7922 Trifolium pratense HOM05D006300 ORTHO05D007623 5.6e-34 149.1 118 69.5
Cpa.g.sc25.55 Carica papaya HOM05D006300 ORTHO05D007623 8.0e-33 145.2 102 74.5
HPP92_003967 Vanilla planifolia HOM05D006300 ORTHO05D007623 1.3e-30 137.9 124 63.7
PGSC0003DMG400002589 Solanum tuberosum HOM05D006300 ORTHO05D007623 7.8e-28 128.6 118 60.2
arahy.Tifrunner.gnm1.ann1.046NH9 Arachis hypogaea HOM05D006300 ORTHO05D007623 2.1e-25 120.6 120 59.2
Zm00001eb337890 Zea mays HOM05D006300 ORTHO05D007623 2.8e-25 120.2 170 40.0
Os01g0197400 Oryza sativa ssp. japonica HOM05D006300 ORTHO05D007623 1.8e-24 117.5 188 38.8
COL.COLO4_30657 Corchorus olitorius HOM05D001008 ORTHO05D007623 2.4e-21 107.1 71 77.5
CSS0024626 Camellia sinensis var. sinensis HOM05D006300 ORTHO05D007623 7.8e-20 102.1 64 82.8
arahy.Tifrunner.gnm1.ann1.Z85M5C Arachis hypogaea HOM05D006300 ORTHO05D007623 3.3e-18 96.7 105 56.2
arahy.Tifrunner.gnm1.ann1.RJ4DBV Arachis hypogaea HOM05D006300 ORTHO05D007623 2.9e-14 83.6 72 61.1
Sed0006903 Sechium edule HOM05D006300 ORTHO05D007623 2.1e-12 77.4 52 71.2
Cpa.g.sc25.56 Carica papaya HOM05D006300 ORTHO05D007623 4.3e-10 69.7 64 56.2
MBI07_g16251_MAGBIO Magnolia biondii HOM05D001001 ORTHO05D000808 1.3e-09 68.2 61 60.7
MBI06_g20962_MAGBIO Magnolia biondii HOM05D006300 ORTHO05D007623 2.1e-09 67.4 40 82.5
arahy.Tifrunner.gnm1.ann1.IE7N3Z Arachis hypogaea HOM05D006300 ORTHO05D007623 3.6e-09 66.6 117 40.2
MBI09_g03017_MAGBIO Magnolia biondii HOM05D006300 ORTHO05D007623 6.2e-09 65.9 49 69.4
CSS0019345 Camellia sinensis var. sinensis HOM05D006300 ORTHO05D007623 6.9e-08 62.4 49 61.2
Sc15g0000130 Simmondsia chinensis HOM05D006300 ORTHO05D007623 5.8e-07 59.3 46 60.9
Lj9P518T56 Lonicera japonica HOM05D006300 ORTHO05D007623 1.3e-06 58.2 42 64.3
arahy.Tifrunner.gnm1.ann1.GTSR33 Arachis hypogaea HOM05D006300 ORTHO05D007623 2.2e-06 57.4 35 74.3
TPR.G8429 Trifolium pratense HOM05D006300 ORTHO05D007623 8.4e-06 55.5 47 57.4


User provided reference genes

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