Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_6g32590 Fragaria vesca HOM05D007352 ORTHO05D009389 4.5e-153 545.8 416 100.0
FAN02G2393 Fragaria x ananassa HOM05D007352 ORTHO05D009389 1.2e-150 537.7 416 99.0
RcHm_v2.0_Chr2g0141041 Rosa chinensis HOM05D007352 ORTHO05D009389 1.6e-139 500.7 416 83.2
FAN09G1056 Fragaria x ananassa HOM05D007352 ORTHO05D009389 1.1e-119 434.9 232 97.0
Prupe.3G056800 Prunus persica HOM05D007352 ORTHO05D009389 3.2e-111 406.8 427 79.6
MD09G1200200 Malus domestica HOM05D007352 ORTHO05D009389 3.7e-107 393.3 424 79.7
Haze_15863 Corylus avellana HOM05D007352 ORTHO05D009389 1.6e-94 351.3 425 74.4
CiPaw.02G144900 Carya illinoinensis HOM05D007352 ORTHO05D009389 2.3e-93 347.4 408 75.7
Lj6g0022790 Lotus japonicus HOM05D007352 ORTHO05D009389 3.0e-93 347.1 407 74.2
CANSAT35G0590 Cannabis sativa HOM05D007352 ORTHO05D009389 6.8e-93 345.9 406 75.6
Glyma.15G131800 Glycine max HOM05D007352 ORTHO05D009389 2.0e-92 344.4 416 73.1
Psat1g166520 Pisum sativum HOM05D007352 ORTHO05D009389 3.4e-92 343.6 406 74.6
Phvul.006G126800 Phaseolus vulgaris HOM05D007352 ORTHO05D009389 7.5e-92 342.4 414 72.5
Ca_00856_v3 Cicer arietinum L. HOM05D007352 ORTHO05D009389 6.3e-91 339.3 405 73.8
Cfa003634 Carpinus fangiana HOM05D007352 ORTHO05D009389 8.3e-91 339.0 419 73.7
TPR.G26324 Trifolium pratense HOM05D007352 ORTHO05D009389 1.8e-90 337.8 406 72.9
arahy.Tifrunner.gnm1.ann1.X8VU69 Arachis hypogaea HOM05D007352 ORTHO05D009389 5.9e-89 332.8 420 71.7
arahy.Tifrunner.gnm1.ann1.Y4G0P0 Arachis hypogaea HOM05D007352 ORTHO05D009389 3.9e-88 330.1 420 71.2
Sed0016070 Sechium edule HOM05D007352 ORTHO05D009389 1.1e-87 328.6 418 71.5
Lalb_Chr20g0120141 Lupinus albus HOM05D007352 ORTHO05D009389 5.6e-87 326.2 403 72.5
Manes.11G031901 Manihot esculenta HOM05D007352 ORTHO05D009389 5.6e-87 326.2 430 70.5
QL05p019112 Quercus lobata HOM05D007352 ORTHO05D009389 5.6e-87 326.2 423 71.9
COL.COLO4_27631 Corchorus olitorius HOM05D007352 ORTHO05D009389 9.5e-87 325.5 416 73.8
Eucgr.F03084 Eucalyptus grandis HOM05D007352 ORTHO05D009389 1.0e-85 322.0 422 73.0
BraA05t20827Z Brassica rapa HOM05D007352 ORTHO05D009389 3.1e-85 320.5 400 74.2
MELO3C012722.2 Cucumis melo HOM05D007352 ORTHO05D009389 4.0e-85 320.1 415 70.6
Gohir.D02G136200 Gossypium hirsutum HOM05D007352 ORTHO05D009389 4.0e-85 320.1 414 71.3
Thecc.02G309100 Theobroma cacao HOM05D007352 ORTHO05D009389 5.2e-85 319.7 408 73.5
Duzib251G0222 Durio zibethinus HOM05D007352 ORTHO05D009389 8.9e-85 318.9 416 72.1
BcaB02g11032 Brassica carinata HOM05D007352 ORTHO05D009389 1.2e-84 318.5 407 73.2
Potri.013G105000 Populus trichocarpa HOM05D007352 ORTHO05D009389 1.2e-84 318.5 405 72.3
ClCG09G008130 Citrullus lanatus HOM05D007352 ORTHO05D009052 5.8e-84 316.2 415 69.9
A05p19210 Brassica napus HOM05D007352 ORTHO05D009389 7.5e-84 315.8 400 74.0
CSS0004060 Camellia sinensis var. sinensis HOM05D007352 ORTHO05D009389 7.5e-84 315.8 414 71.0
Gorai.005G152200 Gossypium raimondii HOM05D007352 ORTHO05D009389 7.5e-84 315.8 412 71.1
Rhsim08G0228600 Rhododendron simsii HOM05D007352 ORTHO05D009389 9.8e-84 315.5 416 72.8
Atru.BG.161.p Acer truncatum HOM05D007352 ORTHO05D009389 1.7e-83 314.7 395 73.9
C06p13600 Brassica napus HOM05D007352 ORTHO05D009389 1.7e-83 314.7 400 74.0
CSS0040101 Camellia sinensis var. sinensis HOM05D007352 ORTHO05D009389 1.7e-83 314.7 414 71.0
Ciclev10025103m.g Citrus clementina HOM05D007352 ORTHO05D009389 2.2e-83 314.3 415 71.6
CsaV3_7G026910 Cucumis sativus L. HOM05D007352 ORTHO05D009389 2.2e-83 314.3 405 71.6
Gohir.A03G111600 Gossypium hirsutum HOM05D007352 ORTHO05D009389 2.2e-83 314.3 414 71.3
Hma1.2p1_0430F.1_g151250 Hydrangea macrophylla HOM05D007352 ORTHO05D009389 4.9e-83 313.2 413 71.7
Sabra13G0090700 Salix brachista HOM05D007352 ORTHO05D009389 1.1e-82 312.0 419 70.4
BcaC08g43959 Brassica carinata HOM05D007352 ORTHO05D009389 1.4e-82 311.6 400 73.8
BolC6t36524H Brassica oleracea HOM05D007352 ORTHO05D009389 1.4e-82 311.6 400 73.8
Cpa.g.sc25.26 Carica papaya HOM05D007352 ORTHO05D009389 1.4e-82 311.6 422 71.3
Lj9A311T59 Lonicera japonica HOM05D007352 ORTHO05D009389 2.7e-81 307.4 410 70.5
Sp1g38610 Schrenkiella parvula HOM05D007352 ORTHO05D009389 6.0e-81 306.2 413 70.7
Dinv27397 Davidia involucrata HOM05D007352 ORTHO05D009389 1.0e-80 305.4 422 70.4
vmacro18843 Vaccinium macrocarpon HOM05D007352 ORTHO05D009389 3.0e-80 303.9 419 71.1
Aa31LG10G2840 Aethionema arabicum HOM05D007352 ORTHO05D009389 5.0e-80 303.1 404 72.0
Lsat_1_v5_gn_4_98021 Lactuca sativa HOM05D007352 ORTHO05D009389 6.6e-80 302.8 411 70.1
Thhalv10011294m.g Eutrema salsugineum HOM05D007352 ORTHO05D009389 1.1e-79 302.0 424 69.3
Sopen03g039940 Solanum pennellii HOM05D007352 ORTHO05D009389 1.5e-79 301.6 421 69.8
THA.LOC104810542 Tarenaya hassleriana HOM05D007352 ORTHO05D009389 1.9e-79 301.2 422 49.5
Solyc03g121110.3 Solanum lycopersicum HOM05D007352 ORTHO05D009389 5.6e-79 299.7 421 69.6
PGSC0003DMG400002522 Solanum tuberosum HOM05D007352 ORTHO05D009389 1.6e-78 298.1 405 71.6
Medtr2g030540 Medicago truncatula HOM05D007352 ORTHO05D009389 3.6e-78 297.0 415 68.9
Peaxi162Scf00038g01145 Petunia axillaris HOM05D007352 ORTHO05D009389 6.2e-78 296.2 408 70.8
CAN.G1143.23 Capsicum annuum HOM05D007352 ORTHO05D009389 8.1e-78 295.8 424 69.8
AT1G51965 Arabidopsis thaliana HOM05D007352 ORTHO05D009389 6.8e-77 292.7 406 71.4
Nitab4.5_0005085g0030 Nicotiana tabacum HOM05D007352 ORTHO05D009389 6.8e-77 292.7 406 71.2
ECA232G1252 Erigeron canadensis HOM05D001329 ORTHO05D004946 8.9e-77 292.4 400 69.5
Migut.L00048 Erythranthe guttata HOM05D007352 ORTHO05D009389 8.9e-77 292.4 406 70.0
Nitab4.5_0004969g0060 Nicotiana tabacum HOM05D007352 ORTHO05D009389 9.8e-76 288.9 406 70.7
Nn2g12740 Nelumbo nucifera HOM05D007352 ORTHO05D009389 1.7e-75 288.1 422 67.3
AL1G60010 Arabidopsis lyrata HOM05D007352 ORTHO05D009389 2.9e-75 287.3 406 70.2
Carub.0001s4090 Capsella rubella HOM05D007352 ORTHO05D009389 2.9e-75 287.3 406 70.0
TAR636G0386 Trochodendron aralioides HOM05D007352 ORTHO05D009389 6.4e-75 286.2 420 66.9
TAR636G1169 Trochodendron aralioides HOM05D007352 ORTHO05D009389 6.4e-75 286.2 420 66.9
SGA_v2.0_scaffold265G46057 Striga asiatica HOM05D007352 ORTHO05D009389 5.4e-74 283.1 402 68.4
AUR62031951 Chenopodium quinoa HOM05D007352 ORTHO05D009389 3.5e-73 280.4 404 71.0
Hund07627 Selenicereus undatus HOM05D007352 ORTHO05D009389 4.6e-73 280.0 405 70.9
Aqoxy7G01368 Aquilegia oxysepala HOM05D007352 ORTHO05D009389 1.0e-72 278.9 420 65.2
AUR62022237 Chenopodium quinoa HOM05D007352 ORTHO05D009389 3.0e-72 277.3 404 70.5
MBI04_g06993_MAGBIO Magnolia biondii HOM05D007352 ORTHO05D009389 3.9e-72 276.9 424 65.6
HanXRQChr11g0348741 Helianthus annuus HOM05D007352 ORTHO05D009389 9.5e-71 272.3 400 67.5
EL10Ac9g21188 Beta vulgaris HOM05D007352 ORTHO05D009389 2.8e-70 270.8 404 69.3
SalBow1G5626 Salvia bowleyana HOM05D007352 ORTHO05D009389 6.2e-70 269.6 416 66.6
Cc06_g12800 Coffea canephora HOM05D007352 ORTHO05D009389 4.0e-69 266.9 407 66.8
GSVIVG01016956001 Vitis vinifera HOM05D007352 ORTHO05D009389 2.4e-66 257.7 385 65.5
Ah.01g017290 Amaranthus hybridus HOM05D007352 ORTHO05D009389 4.4e-60 236.9 501 46.3
HPP92_000532 Vanilla planifolia HOM05D007352 ORTHO05D009389 9.9e-60 235.7 400 64.8
CDE05G2407 Ceratophyllum demersum HOM05D007352 ORTHO05D009389 5.4e-58 229.9 405 63.5
Os02g0226900 Oryza sativa ssp. japonica HOM05D007352 ORTHO05D009389 1.2e-57 228.8 405 63.7
Actinidia32110 Actinidia chinensis HOM05D007352 ORTHO05D009389 3.9e-56 223.8 228 53.9
SHI11130 Sapria himalayana HOM05D007352 ORTHO05D009389 1.1e-55 222.2 420 45.5
Sc15g0001710 Simmondsia chinensis HOM05D007352 ORTHO05D009389 6.9e-53 213.0 219 53.0
Zm00001eb205030 Zea mays HOM05D007352 ORTHO05D009389 1.4e-42 178.7 406 60.1
Aqoxy5G00202 Aquilegia oxysepala HOM05D007352 ORTHO05D009389 3.0e-32 144.4 132 54.5
PSO832G0057 Papaver somniferum HOM05D007352 ORTHO05D009389 3.9e-32 144.1 266 77.1
FAN14G1294 Fragaria x ananassa HOM05D007352 ORTHO05D009389 2.5e-31 141.4 68 100.0
FAN05G5710 Fragaria x ananassa HOM05D007352 ORTHO05D009389 9.6e-31 139.4 68 98.5
Ah.16g103250 Amaranthus hybridus HOM05D007352 ORTHO05D009389 5.3e-29 133.7 233 39.5
FAN05G3498 Fragaria x ananassa HOM05D001329 ORTHO05D002618 5.3e-29 133.7 65 98.5
Sc15g0001700 Simmondsia chinensis HOM05D007352 ORTHO05D009389 2.3e-24 118.2 68 77.9
Actinidia32109 Actinidia chinensis HOM05D000647 ORTHO05D000485 3.3e-23 114.4 68 73.5
SEGI_18978 Sequoiadendron giganteum HOM05D007352 ORTHO05D009389 3.3e-23 114.4 409 53.1
Ah.16g103230 Amaranthus hybridus HOM05D007352 ORTHO05D009389 1.6e-22 112.1 68 72.1
MD15G1412800 Malus domestica HOM05D007352 ORTHO05D009389 8.2e-22 109.8 68 75.0
VMungo0540G1340 Vigna mungo HOM05D007352 ORTHO05D009389 1.1e-21 109.4 68 69.1
CARHR042130 Cardamine hirsuta HOM05D007352 ORTHO05D009389 7.7e-20 103.2 68 69.1
ATR0751G068 Amborella trichopoda HOM05D007352 ORTHO05D009389 3.2e-18 97.8 149 41.6
SGA_v2.0_scaffold115G32057 Striga asiatica HOM05D007352 ORTHO05D009389 1.1e-07 62.8 63 47.6


User provided reference genes

Program Settings