Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_6g25610 Fragaria vesca HOM05D001125 ORTHO05D003189 5.4e-87 324.3 166 100.0
FvH4_c17g00020 Fragaria vesca HOM05D001125 ORTHO05D003189 4.3e-68 261.5 196 74.0
FvH4_c15g00040 Fragaria vesca HOM05D001125 ORTHO05D003189 1.4e-55 219.9 133 85.0
FAN17G1093 Fragaria x ananassa HOM05D001125 ORTHO05D003189 1.4e-50 203.4 220 57.3
FAN05G1855 Fragaria x ananassa HOM05D001125 ORTHO05D003189 2.7e-46 189.1 126 80.2
FAN09G2333 Fragaria x ananassa HOM05D001125 ORTHO05D003189 1.6e-43 179.9 122 77.9
FAN05G4313 Fragaria x ananassa HOM05D001125 ORTHO05D003189 8.4e-40 167.5 133 68.4
FvH4_6g26550 Fragaria vesca HOM05D001125 ORTHO05D003189 1.4e-39 166.8 133 67.7
FAN14G4163 Fragaria x ananassa HOM05D001125 ORTHO05D003189 1.4e-39 166.8 133 67.7
FAN09G1980 Fragaria x ananassa HOM05D001125 ORTHO05D003189 3.5e-38 162.2 133 66.9
FvH4_2g12101 Fragaria vesca HOM05D001125 ORTHO05D003189 4.6e-38 161.8 134 67.2
FvH4_6g25731 Fragaria vesca HOM05D001125 ORTHO05D003189 1.0e-37 160.6 130 70.0
FAN02G2881 Fragaria x ananassa HOM05D001125 ORTHO05D003189 3.0e-37 159.1 134 67.2
FvH4_5g28561 Fragaria vesca HOM05D001125 ORTHO05D003189 2.9e-32 142.5 134 62.7
RcHm_v2.0_Chr2g0127601 Rosa chinensis HOM05D001125 ORTHO05D003189 1.4e-31 140.2 137 63.5
FAN18G4467 Fragaria x ananassa HOM05D001125 ORTHO05D003189 1.8e-29 133.3 119 63.9
FAN24G2829 Fragaria x ananassa HOM05D001125 ORTHO05D003189 3.3e-28 129.0 120 64.2
FvH4_6g25690 Fragaria vesca HOM05D001125 ORTHO05D003189 5.7e-28 128.3 115 65.2
FAN24G1048 Fragaria x ananassa HOM05D001125 ORTHO05D003189 6.2e-27 124.8 133 55.6
MD17G1235800 Malus domestica HOM05D001125 ORTHO05D003189 2.3e-21 106.3 131 51.1
MD09G1243900 Malus domestica HOM05D001125 ORTHO05D003189 3.0e-21 105.9 128 50.0
FAN02G4535 Fragaria x ananassa HOM05D001125 ORTHO05D003189 8.7e-21 104.4 140 50.0
Prupe.3G140300 Prunus persica HOM05D001125 ORTHO05D003189 8.7e-21 104.4 138 48.6
FAN18G2268 Fragaria x ananassa HOM05D001125 ORTHO05D029363 2.5e-20 102.8 95 64.2
CsaV3_7G005850 Cucumis sativus L. HOM05D001125 ORTHO05D003189 5.7e-20 101.7 135 47.4
ClCG07G002500 Citrullus lanatus HOM05D001125 ORTHO05D003189 9.7e-20 100.9 135 48.1
Sed0000582 Sechium edule HOM05D001125 ORTHO05D003189 2.4e-18 96.3 133 48.9
Haze_13207 Corylus avellana HOM05D001125 ORTHO05D003189 3.1e-18 95.9 134 45.5
CSS0025160 Camellia sinensis var. sinensis HOM05D001125 ORTHO05D003189 5.3e-18 95.1 140 42.9
FAN20G0613 Fragaria x ananassa HOM05D001125 ORTHO05D003189 5.3e-18 95.1 94 58.5
Sed0012231 Sechium edule HOM05D001125 ORTHO05D003189 1.2e-17 94.0 132 47.7
CiPaw.03G179800 Carya illinoinensis HOM05D001125 ORTHO05D003189 2.0e-17 93.2 139 45.3
MELO3C018707.2 Cucumis melo HOM05D001125 ORTHO05D003189 7.7e-17 91.3 133 45.9
QL08p039736 Quercus lobata HOM05D001125 ORTHO05D003189 1.7e-16 90.1 144 44.4
Sp1g02640 Schrenkiella parvula HOM05D001125 ORTHO05D003189 3.8e-16 89.0 134 43.3
Dinv06876 Davidia involucrata HOM05D001125 ORTHO05D003189 5.0e-16 88.6 134 41.0
Dinv04810 Davidia involucrata HOM05D001125 ORTHO05D003189 8.5e-16 87.8 129 41.9
THA.LOC104801165 Tarenaya hassleriana HOM05D001125 ORTHO05D003189 1.1e-15 87.4 136 44.1
Manes.13G144200 Manihot esculenta HOM05D001125 ORTHO05D003189 3.2e-15 85.9 138 42.8
Thhalv10006864m.g Eutrema salsugineum HOM05D001125 ORTHO05D003189 5.5e-15 85.1 135 42.2
Hma1.2p1_2181F.1_g316280 Hydrangea macrophylla HOM05D001125 ORTHO05D003189 5.5e-15 85.1 136 41.2
TWI14G1126 Tripterygium wilfordii HOM05D001125 ORTHO05D003189 5.5e-15 85.1 138 44.2
Cpa.g.sc83.73 Carica papaya HOM05D001125 ORTHO05D003189 9.4e-15 84.3 140 42.1
TWI23G1275 Tripterygium wilfordii HOM05D001125 ORTHO05D003189 9.4e-15 84.3 139 44.6
Actinidia11095 Actinidia chinensis HOM05D001125 ORTHO05D003189 1.6e-14 83.6 138 41.3
GSVIVG01020580001 Vitis vinifera HOM05D001125 ORTHO05D003189 1.6e-14 83.6 129 42.6
Hma1.2p1_0002F.1_g002120 Hydrangea macrophylla HOM05D001125 ORTHO05D003189 2.7e-14 82.8 128 43.0
Solyc10g008210.3 Solanum lycopersicum HOM05D001125 ORTHO05D003189 3.6e-14 82.4 138 37.7
Eucgr.A01835 Eucalyptus grandis HOM05D001125 ORTHO05D003189 4.6e-14 82.0 137 43.1
Sopen10g004070 Solanum pennellii HOM05D001125 ORTHO05D003189 4.6e-14 82.0 137 38.0
Sabra17G0010600 Salix brachista HOM05D001125 ORTHO05D003189 1.0e-13 80.9 140 41.4
vmacro12331 Vaccinium macrocarpon HOM05D001125 ORTHO05D003189 1.0e-13 80.9 131 41.2
Atru.chr6.2891 Acer truncatum HOM05D001125 ORTHO05D003189 1.4e-13 80.5 128 44.5
BcaC05g24510 Brassica carinata HOM05D001125 ORTHO05D003189 1.4e-13 80.5 140 39.3
CARHR003110 Cardamine hirsuta HOM05D001125 ORTHO05D003189 1.4e-13 80.5 136 42.6
PGSC0003DMG400021859 Solanum tuberosum HOM05D001125 ORTHO05D003189 1.4e-13 80.5 137 37.2
Potri.017G013100 Populus trichocarpa HOM05D001125 ORTHO05D003189 1.8e-13 80.1 140 41.4
BcaNung06826 Brassica carinata HOM05D001125 ORTHO05D003189 2.3e-13 79.7 136 39.7
C05p02130 Brassica napus HOM05D001125 ORTHO05D003189 2.3e-13 79.7 136 39.7
BolC5t28990H Brassica oleracea HOM05D001125 ORTHO05D003189 2.3e-13 79.7 136 39.7
Sabra07G0111700 Salix brachista HOM05D001125 ORTHO05D003189 3.0e-13 79.3 139 42.4
FvH4_5g28450 Fragaria vesca HOM05D001125 ORTHO05D003189 3.9e-13 79.0 96 52.1
Carub.0001s0288 Capsella rubella HOM05D001125 ORTHO05D003189 5.1e-13 78.6 135 40.7
Potri.007G138600 Populus trichocarpa HOM05D001125 ORTHO05D003189 8.8e-13 77.8 142 43.0
SalBow7G3984 Salvia bowleyana HOM05D001125 ORTHO05D003189 8.8e-13 77.8 137 39.4
Thecc.02G183400 Theobroma cacao HOM05D001125 ORTHO05D003189 1.1e-12 77.4 136 41.9
Rhsim06G0138900 Rhododendron simsii HOM05D001125 ORTHO05D003189 1.5e-12 77.0 132 40.2
SalBow7G0071 Salvia bowleyana HOM05D001125 ORTHO05D003189 2.0e-12 76.6 137 39.4
A10p02320 Brassica napus HOM05D001125 ORTHO05D003189 2.5e-12 76.3 136 38.2
Oeu036072.3 Olea europaea HOM05D001125 ORTHO05D003189 2.5e-12 76.3 120 44.2
Oeu044723.1 Olea europaea HOM05D001125 ORTHO05D003189 2.5e-12 76.3 138 42.8
MSTRG.6668 Avicennia marina HOM05D001125 ORTHO05D003189 5.7e-12 75.1 137 40.1
CANSAT64G2845 Cannabis sativa HOM05D001125 ORTHO05D003189 5.7e-12 75.1 135 41.5
FvH4_5g28440 Fragaria vesca HOM05D001125 ORTHO05D003189 7.4e-12 74.7 38 94.7
FvH4_5g28402 Fragaria vesca HOM05D001125 ORTHO05D003189 9.7e-12 74.3 43 86.0
BraA10t42499Z Brassica rapa HOM05D001125 ORTHO05D003189 1.3e-11 73.9 137 38.0
Lj1C712T4 Lonicera japonica HOM05D001125 ORTHO05D003189 1.7e-11 73.6 131 38.2
PGR042G1351 Punica granatum HOM05D001125 ORTHO05D003189 1.7e-11 73.6 139 38.8
Cc05_g07520 Coffea canephora HOM05D001125 ORTHO05D003189 4.8e-11 72.0 138 38.4
Sc21g0003100 Simmondsia chinensis HOM05D001125 ORTHO05D003189 6.3e-11 71.6 133 40.6
unitig_46.g18245 Utricularia gibba HOM05D001125 ORTHO05D003189 8.2e-11 71.2 138 38.4
BcaC07g42227 Brassica carinata HOM05D001125 ORTHO05D003189 1.1e-10 70.9 138 39.9
BolC7t43222H Brassica oleracea HOM05D001125 ORTHO05D003189 1.1e-10 70.9 107 42.1
BcaC06g34577 Brassica carinata HOM05D001125 ORTHO05D003189 1.4e-10 70.5 107 42.1
Aa31LG1G8990 Aethionema arabicum HOM05D001125 ORTHO05D003189 1.8e-10 70.1 132 36.4
AL1G13330 Arabidopsis lyrata HOM05D001125 ORTHO05D003189 1.8e-10 70.1 131 39.7
CAN.G1762.1 Capsicum annuum HOM05D001125 ORTHO05D003189 1.8e-10 70.1 125 37.6
C07p26940 Brassica napus HOM05D001125 ORTHO05D003189 2.4e-10 69.7 107 42.1
DCAR_021255 Daucus carota HOM05D001125 ORTHO05D003189 2.4e-10 69.7 142 38.0
Nitab4.5_0004959g0070 Nicotiana tabacum HOM05D001125 ORTHO05D003189 2.4e-10 69.7 136 36.0
Peaxi162Scf00008g00612 Petunia axillaris HOM05D001125 ORTHO05D003189 2.4e-10 69.7 129 37.2
Sp2g09090 Schrenkiella parvula HOM05D001125 ORTHO05D003189 2.4e-10 69.7 114 41.2
CAN.G209.29 Capsicum annuum HOM05D001125 ORTHO05D003189 3.1e-10 69.3 121 36.4
COL.COLO4_05959 Corchorus olitorius HOM05D001125 ORTHO05D003189 4.1e-10 68.9 134 41.8
Ciclev10014346m.g Citrus clementina HOM05D001125 ORTHO05D003189 5.3e-10 68.6 136 42.6
Nitab4.5_0006721g0030 Nicotiana tabacum HOM05D001125 ORTHO05D003189 5.3e-10 68.6 136 33.8
Thhalv10003404m.g Eutrema salsugineum HOM05D001125 ORTHO05D003189 1.2e-09 67.4 113 41.6
Hma1.2p1_0635F.1_g193150 Hydrangea macrophylla HOM05D001125 ORTHO05D003189 1.2e-09 67.4 100 44.0
Hma1.2p1_0766F.1_g215230 Hydrangea macrophylla HOM05D001125 ORTHO05D003189 1.2e-09 67.4 100 44.0
Hma1.2p1_1486F.1_g286545 Hydrangea macrophylla HOM05D001125 ORTHO05D003189 1.2e-09 67.4 100 44.0
Medtr4g078565 Medicago truncatula HOM05D001125 ORTHO05D003189 1.2e-09 67.4 103 44.7
MSTRG.14940 Avicennia marina HOM05D001125 ORTHO05D003189 1.5e-09 67.0 140 35.7
Solyc12g005480.2 Solanum lycopersicum HOM05D001125 ORTHO05D003189 1.5e-09 67.0 137 33.6
PGSC0003DMG400013743 Solanum tuberosum HOM05D001125 ORTHO05D003189 1.5e-09 67.0 137 34.3
vmacro09257 Vaccinium macrocarpon HOM05D001125 ORTHO05D003189 1.5e-09 67.0 167 31.7
BcaC06g31636 Brassica carinata HOM05D001125 ORTHO05D003189 2.6e-09 66.2 107 41.1
Migut.M00163 Erythranthe guttata HOM05D001125 ORTHO05D003189 3.4e-09 65.9 137 36.5
AT1G03780 Arabidopsis thaliana HOM05D001125 ORTHO05D003189 4.5e-09 65.5 123 36.6
Hma1.2p1_0225F.1_g094990 Hydrangea macrophylla HOM05D001125 ORTHO05D003189 4.5e-09 65.5 100 43.0
Sopen07g027760 Solanum pennellii HOM05D001125 ORTHO05D003189 4.5e-09 65.5 130 35.4
Duzib052G0690 Durio zibethinus HOM05D001125 ORTHO05D003189 1.0e-08 64.3 111 37.8
Gorai.005G200300 Gossypium raimondii HOM05D001125 ORTHO05D003189 1.0e-08 64.3 44 70.5
Rhsim04G0070200 Rhododendron simsii HOM05D001125 ORTHO05D003189 1.0e-08 64.3 50 60.0
SGA_v2.0_scaffold34G13940 Striga asiatica HOM05D001125 ORTHO05D003189 1.0e-08 64.3 137 36.5
SGA_v2.0_scaffold70G23508 Striga asiatica HOM05D001125 ORTHO05D003189 1.0e-08 64.3 138 34.1
TAR627G0354 Trochodendron aralioides HOM05D001125 ORTHO05D003189 1.0e-08 64.3 136 35.3
Glyma.12G116700 Glycine max HOM05D001125 ORTHO05D003189 1.3e-08 63.9 118 40.7
Lj3g0021800 Lotus japonicus HOM05D001125 ORTHO05D003189 2.9e-08 62.8 54 66.7
Sopen12g001480 Solanum pennellii HOM05D001125 ORTHO05D003189 2.9e-08 62.8 137 32.8
TAR627G0421 Trochodendron aralioides HOM05D001125 ORTHO05D003189 3.8e-08 62.4 136 34.6
CAN.G397.60 Capsicum annuum HOM05D001125 ORTHO05D003189 5.0e-08 62.0 125 36.0
Duzib132G1183 Durio zibethinus HOM05D001125 ORTHO05D003189 5.0e-08 62.0 52 63.5
Gohir.A03G155500 Gossypium hirsutum HOM05D001125 ORTHO05D003189 5.0e-08 62.0 44 68.2
Gorai.002G019900 Gossypium raimondii HOM05D001125 ORTHO05D003189 5.0e-08 62.0 47 63.8
PSO675G6510 Papaver somniferum HOM05D001125 ORTHO05D003189 5.0e-08 62.0 147 34.7
Nitab4.5_0002350g0080 Nicotiana tabacum HOM05D001125 ORTHO05D003189 6.5e-08 61.6 127 37.0
PSO541G3419 Papaver somniferum HOM05D001125 ORTHO05D003189 6.5e-08 61.6 147 34.7
Phvul.011G125500 Phaseolus vulgaris HOM05D001125 ORTHO05D003189 6.5e-08 61.6 118 41.5
Psat0s3446g0040 Pisum sativum HOM05D001125 ORTHO05D003189 6.5e-08 61.6 54 66.7
Solyc07g053790.2 Solanum lycopersicum HOM05D001125 ORTHO05D003189 6.5e-08 61.6 130 34.6
TAR629G2008 Trochodendron aralioides HOM05D001125 ORTHO05D003189 6.5e-08 61.6 136 36.8
Gohir.D01G017600 Gossypium hirsutum HOM05D001125 ORTHO05D003189 1.1e-07 60.8 48 62.5
Aqoxy1G02346 Aquilegia oxysepala HOM05D001125 ORTHO05D003189 1.4e-07 60.5 50 60.0
Ca_18932_v3 Cicer arietinum L. HOM05D001125 ORTHO05D003189 1.4e-07 60.5 104 42.3
TPR.G31026 Trifolium pratense HOM05D001125 ORTHO05D003189 1.9e-07 60.1 105 41.9
VMungo1127G0389 Vigna mungo HOM05D001125 ORTHO05D003189 1.9e-07 60.1 121 38.0
Nn1g06463 Nelumbo nucifera HOM05D001125 ORTHO05D003189 2.5e-07 59.7 137 36.5
Hma1.2p1_0255F.1_g103240 Hydrangea macrophylla HOM05D001125 ORTHO05D003189 3.2e-07 59.3 38 71.1
ECA233G3717 Erigeron canadensis HOM05D001125 ORTHO05D003189 4.2e-07 58.9 137 32.8
Gohir.A01G019000 Gossypium hirsutum HOM05D001125 ORTHO05D003189 4.2e-07 58.9 48 58.3
CAN.G282.1 Capsicum annuum HOM05D000846 ORTHO05D001340 5.5e-07 58.5 53 50.9
Nn1g04165 Nelumbo nucifera HOM05D001125 ORTHO05D003189 7.2e-07 58.2 50 60.0
CAN.G1110.1 Capsicum annuum HOM05D001125 ORTHO05D003189 9.4e-07 57.8 50 52.0
AUR62038884 Chenopodium quinoa HOM05D001125 ORTHO05D003189 1.2e-06 57.4 128 35.2
HanXRQChr17g0559321 Helianthus annuus HOM05D001125 ORTHO05D003189 1.2e-06 57.4 134 34.3
CAN.G988.4 Capsicum annuum HOM05D001125 ORTHO05D003189 3.6e-06 55.8 121 33.1
HanXRQChr17g0554381 Helianthus annuus HOM05D001125 ORTHO05D003189 6.1e-06 55.1 124 37.9
Lsat_1_v5_gn_8_134661 Lactuca sativa HOM05D001125 ORTHO05D003189 6.1e-06 55.1 51 56.9


User provided reference genes

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