Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_6g07900 Fragaria vesca HOM05D006608 ORTHO05D008316 1.2e-112 409.8 208 100.0
FAN14G1365 Fragaria x ananassa HOM05D006608 ORTHO05D008316 1.2e-112 409.8 208 100.0
FAN02G2060 Fragaria x ananassa HOM05D006608 ORTHO05D008316 7.4e-110 400.6 208 97.1
RcHm_v2.0_Chr3g0457591 Rosa chinensis HOM05D006608 ORTHO05D008316 2.8e-109 398.7 208 97.6
FAN05G5720 Fragaria x ananassa HOM05D006608 ORTHO05D008316 1.4e-108 396.4 208 97.1
FAN09G0299 Fragaria x ananassa HOM05D002543 ORTHO05D002990 6.9e-108 394.0 204 97.1
Prupe.6G309700 Prunus persica HOM05D006608 ORTHO05D008316 1.0e-95 353.6 209 84.7
MD04G1191200 Malus domestica HOM05D006608 ORTHO05D008316 9.7e-94 347.1 209 82.8
MD12G1203800 Malus domestica HOM05D006608 ORTHO05D008316 9.7e-94 347.1 209 82.3
ECA240G1520 Erigeron canadensis HOM05D006608 ORTHO05D008316 7.0e-92 340.9 208 80.8
HanXRQChr09g0247441 Helianthus annuus HOM05D006608 ORTHO05D008316 9.1e-92 340.5 208 79.8
Thecc.05G325800 Theobroma cacao HOM05D006608 ORTHO05D008316 9.1e-92 340.5 208 79.8
Potri.005G010700 Populus trichocarpa HOM05D006608 ORTHO05D008316 1.2e-91 340.1 208 79.3
Potri.013G006500 Populus trichocarpa HOM05D006608 ORTHO05D008316 5.9e-91 337.8 208 78.8
Manes.08G109600 Manihot esculenta HOM05D006608 ORTHO05D008316 7.7e-91 337.4 208 76.9
COL.COLO4_05523 Corchorus olitorius HOM05D006608 ORTHO05D008316 1.3e-90 336.7 208 79.8
Sabra05G0007800 Salix brachista HOM05D006608 ORTHO05D008316 2.2e-90 335.9 208 77.9
Sabra05G0019000 Salix brachista HOM05D006608 ORTHO05D008316 5.0e-90 334.7 208 77.4
Sabra13G0005500 Salix brachista HOM05D006608 ORTHO05D008316 5.0e-90 334.7 208 77.9
PGR031G0497 Punica granatum HOM05D006608 ORTHO05D008316 1.4e-89 333.2 209 78.0
CSS0011542 Camellia sinensis var. sinensis HOM05D006608 ORTHO05D008316 1.9e-89 332.8 208 78.8
Ciclev10002108m.g Citrus clementina HOM05D006608 ORTHO05D008316 3.2e-89 332.0 208 77.4
Lj2g0018741 Lotus japonicus HOM05D006608 ORTHO05D008316 3.2e-89 332.0 205 81.0
QL03p016892 Quercus lobata HOM05D006608 ORTHO05D008316 4.2e-89 331.6 205 78.0
Lj9A306T68 Lonicera japonica HOM05D006608 ORTHO05D008316 1.2e-88 330.1 205 76.6
TWI12G0784 Tripterygium wilfordii HOM05D006608 ORTHO05D008316 1.2e-88 330.1 207 78.7
Duzib177G0608 Durio zibethinus HOM05D006608 ORTHO05D008316 1.6e-88 329.7 208 78.4
Cfa006713 Carpinus fangiana HOM05D006608 ORTHO05D008316 2.1e-88 329.3 205 78.0
Eucgr.H01287 Eucalyptus grandis HOM05D006608 ORTHO05D008316 2.1e-88 329.3 208 76.0
SGA_v2.0_scaffold4G01979 Striga asiatica HOM05D006608 ORTHO05D008316 2.1e-88 329.3 207 78.3
Dinv30914 Davidia involucrata HOM05D006608 ORTHO05D008316 2.7e-88 328.9 207 76.8
Gohir.A13G176500 Gossypium hirsutum HOM05D006608 ORTHO05D008316 2.7e-88 328.9 209 78.9
Gorai.013G208300 Gossypium raimondii HOM05D006608 ORTHO05D008316 2.7e-88 328.9 209 78.9
Haze_04048 Corylus avellana HOM05D006608 ORTHO05D008316 3.6e-88 328.6 205 77.6
CANSAT54G1874 Cannabis sativa HOM05D006608 ORTHO05D008316 6.1e-88 327.8 208 77.4
CiPaw.08G154200 Carya illinoinensis HOM05D006608 ORTHO05D008316 1.0e-87 327.0 208 76.4
MELO3C026109.2 Cucumis melo HOM05D006608 ORTHO05D008316 1.0e-87 327.0 208 77.9
DCAR_002111 Daucus carota HOM05D006608 ORTHO05D008316 1.8e-87 326.2 205 76.1
Sed0000881 Sechium edule HOM05D006608 ORTHO05D008316 1.8e-87 326.2 208 77.9
Peaxi162Scf00299g00341 Petunia axillaris HOM05D006608 ORTHO05D008316 2.3e-87 325.9 208 77.9
CsaV3_1G015710 Cucumis sativus L. HOM05D006608 ORTHO05D008316 3.0e-87 325.5 208 77.4
Lsat_1_v5_gn_7_65241 Lactuca sativa HOM05D006608 ORTHO05D008316 2.6e-86 322.4 199 79.4
ClCG01G010870 Citrullus lanatus HOM05D006608 ORTHO05D008316 3.3e-86 322.0 211 75.4
vmacro01585 Vaccinium macrocarpon HOM05D006608 ORTHO05D008316 3.3e-86 322.0 206 75.2
THA.LOC104820562 Tarenaya hassleriana HOM05D006608 ORTHO05D008316 4.4e-86 321.6 205 77.1
MBI18_g27388_MAGBIO Magnolia biondii HOM05D006608 ORTHO05D008316 5.7e-86 321.2 204 75.0
TAR362G0553 Trochodendron aralioides HOM05D006608 ORTHO05D008316 5.7e-86 321.2 206 74.3
MSTRG.16414 Avicennia marina HOM05D006608 ORTHO05D008316 1.7e-85 319.7 208 76.4
C01p27450 Brassica napus HOM05D006608 ORTHO05D008316 1.7e-85 319.7 203 76.4
Cpa.g.sc48.186 Carica papaya HOM05D006608 ORTHO05D008316 1.7e-85 319.7 187 82.4
AUR62006773 Chenopodium quinoa HOM05D006608 ORTHO05D008316 1.7e-85 319.7 208 75.0
VMungo1383G0735 Vigna mungo HOM05D006608 ORTHO05D008316 1.7e-85 319.7 207 76.3
Actinidia35508 Actinidia chinensis HOM05D006608 ORTHO05D008316 3.7e-85 318.5 208 74.0
Ca_09291_v3 Cicer arietinum L. HOM05D006608 ORTHO05D008316 3.7e-85 318.5 205 78.5
Ah.04g158480 Amaranthus hybridus HOM05D006608 ORTHO05D008316 4.8e-85 318.2 208 75.0
Phvul.001G224100 Phaseolus vulgaris HOM05D006608 ORTHO05D008316 4.8e-85 318.2 208 76.0
Aqoxy2G02631 Aquilegia oxysepala HOM05D006608 ORTHO05D008316 8.2e-85 317.4 208 74.5
arahy.Tifrunner.gnm1.ann1.7ZK9KC Arachis hypogaea HOM05D006608 ORTHO05D008316 8.2e-85 317.4 208 75.0
GSVIVG01031268001 Vitis vinifera HOM05D006608 ORTHO05D008316 1.1e-84 317.0 208 74.0
Lalb_Chr04g0260371 Lupinus albus HOM05D006608 ORTHO05D008316 1.8e-84 316.2 208 74.5
SalBow5G2350 Salvia bowleyana HOM05D006608 ORTHO05D008316 1.8e-84 316.2 208 74.5
Cc02_g35130 Coffea canephora HOM05D006608 ORTHO05D008316 2.4e-84 315.8 208 75.0
Migut.B00927 Erythranthe guttata HOM05D006608 ORTHO05D008316 2.4e-84 315.8 208 74.0
arahy.Tifrunner.gnm1.ann1.V41D0B Arachis hypogaea HOM05D006608 ORTHO05D008316 3.1e-84 315.5 208 74.0
Nitab4.5_0005908g0020 Nicotiana tabacum HOM05D006608 ORTHO05D008316 3.1e-84 315.5 205 75.1
Hund21858 Selenicereus undatus HOM05D006608 ORTHO05D008316 4.1e-84 315.1 207 74.9
A08p11770 Brassica napus HOM05D006608 ORTHO05D008316 7.0e-84 314.3 203 75.9
BraA08t33169Z Brassica rapa HOM05D006608 ORTHO05D008316 7.0e-84 314.3 203 75.9
Solyc01g106090.3 Solanum lycopersicum HOM05D006608 ORTHO05D008316 7.0e-84 314.3 208 75.0
Glyma.03G230300 Glycine max HOM05D006608 ORTHO05D008316 9.1e-84 313.9 208 74.0
arahy.Tifrunner.gnm1.ann1.0RV1NN Arachis hypogaea HOM05D006608 ORTHO05D008316 1.2e-83 313.5 205 74.6
PSO210G3601 Papaver somniferum HOM05D006608 ORTHO05D008316 1.2e-83 313.5 205 72.7
Sp7g13760 Schrenkiella parvula HOM05D006608 ORTHO05D008316 2.0e-83 312.8 203 75.9
Sopen01g048480 Solanum pennellii HOM05D006608 ORTHO05D008316 2.0e-83 312.8 208 74.5
arahy.Tifrunner.gnm1.ann1.FYW6BY Arachis hypogaea HOM05D006608 ORTHO05D008316 2.6e-83 312.4 208 73.6
Thhalv10025982m.g Eutrema salsugineum HOM05D006608 ORTHO05D008316 3.5e-83 312.0 203 74.9
PGSC0003DMG400010682 Solanum tuberosum HOM05D006608 ORTHO05D008316 3.5e-83 312.0 208 74.0
BcaC09g50245 Brassica carinata HOM05D006608 ORTHO05D008316 4.5e-83 311.6 203 74.9
BolC8t48283H Brassica oleracea HOM05D006608 ORTHO05D008316 4.5e-83 311.6 203 74.9
A01p22060 Brassica napus HOM05D006608 ORTHO05D008316 5.9e-83 311.2 202 74.8
CAN.G504.78 Capsicum annuum HOM05D006608 ORTHO05D008316 5.9e-83 311.2 208 74.5
Carub.0007s2637 Capsella rubella HOM05D006608 ORTHO05D008316 7.7e-83 310.8 205 74.1
PSO761G0023 Papaver somniferum HOM05D006608 ORTHO05D008316 7.7e-83 310.8 205 72.2
AT4G15510 Arabidopsis thaliana HOM05D006608 ORTHO05D008316 1.0e-82 310.5 205 75.1
BolC1t02685H Brassica oleracea HOM05D006608 ORTHO05D008316 1.0e-82 310.5 203 74.4
Nitab4.5_0002750g0060 Nicotiana tabacum HOM05D006608 ORTHO05D008316 1.3e-82 310.1 205 73.7
EL10Ac4g09502 Beta vulgaris HOM05D006608 ORTHO05D008316 1.7e-82 309.7 208 73.1
CDE01G0267 Ceratophyllum demersum HOM05D006608 ORTHO05D008316 1.7e-82 309.7 205 70.7
AL7G40010 Arabidopsis lyrata HOM05D006608 ORTHO05D008316 2.2e-82 309.3 205 75.1
BcaC07g37888 Brassica carinata HOM05D006608 ORTHO05D008316 2.2e-82 309.3 203 74.4
Psat3g014240 Pisum sativum HOM05D006608 ORTHO05D008316 2.2e-82 309.3 178 82.6
Rhsim11G0098400 Rhododendron simsii HOM05D006608 ORTHO05D008316 1.1e-81 307.0 229 67.7
ATR0706G264 Amborella trichopoda HOM05D006608 ORTHO05D008316 1.9e-81 306.2 188 78.2
BcaNung00268 Brassica carinata HOM05D006608 ORTHO05D008316 5.5e-81 304.7 199 75.4
Gohir.D13G182950 Gossypium hirsutum HOM05D006608 ORTHO05D008316 1.6e-80 303.1 209 74.6
TPR.G1650 Trifolium pratense HOM05D006608 ORTHO05D008316 1.6e-80 303.1 205 74.1
Medtr7g111880 Medicago truncatula HOM05D006608 ORTHO05D008316 2.7e-80 302.4 206 73.8
Aa31LG2G11410 Aethionema arabicum HOM05D006608 ORTHO05D008316 4.7e-80 301.6 204 71.1
CDE12G0684 Ceratophyllum demersum HOM05D006608 ORTHO05D008316 4.7e-80 301.6 201 70.1
CARHR222300 Cardamine hirsuta HOM05D006608 ORTHO05D008316 1.4e-79 300.1 205 70.7
BcaB04g18298 Brassica carinata HOM05D006608 ORTHO05D008316 4.0e-79 298.5 178 79.8
Zm00001eb028550 Zea mays HOM05D006608 ORTHO05D008316 1.7e-77 293.1 181 77.9
unitig_0.g2226 Utricularia gibba HOM05D006608 ORTHO05D008316 3.7e-77 292.0 207 69.6
Os07g0275100 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 9.1e-76 287.3 183 73.8
Nn4g25453 Nelumbo nucifera HOM05D006608 ORTHO05D008316 1.2e-75 287.0 208 67.8
BcaC09g50241 Brassica carinata HOM05D006608 ORTHO05D008316 5.0e-74 281.6 183 74.3
SEGI_38534 Sequoiadendron giganteum HOM05D006608 ORTHO05D008316 1.0e-71 273.9 193 67.4
Mapoly0002s0119 Marchantia polymorpha HOM05D006608 ORTHO05D008316 9.1e-68 260.8 189 64.0
Oeu019844.1 Olea europaea HOM05D006608 ORTHO05D008316 1.6e-67 260.0 206 65.5
Pp3c25_7030 Physcomitrium patens HOM05D006608 ORTHO05D008316 1.9e-65 253.1 181 67.4
SMO203G0012 Selaginella moellendorffii HOM05D006608 ORTHO05D008316 6.6e-58 228.0 176 60.2
CBR_g54968 Chara braunii HOM05D006608 ORTHO05D008316 1.0e-55 220.7 180 57.2
Sc09g0002570 Simmondsia chinensis HOM05D006608 ORTHO05D008316 1.7e-50 203.4 135 71.9
Cre08.g362900 Chlamydomonas reinhardtii HOM05D006608 ORTHO05D008316 3.2e-44 182.6 214 46.3
Os12g0564400 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 3.2e-44 182.6 117 70.9
AUR62000427 Chenopodium quinoa HOM05D006608 ORTHO05D008316 1.2e-43 180.6 114 77.2
MCO08G333 Micromonas commoda HOM05D006608 ORTHO05D008316 1.6e-35 153.7 167 46.1
PRCOL_00003409 Prasinoderma coloniale HOM05D006608 ORTHO05D008316 1.4e-23 114.0 188 36.2
Os07g0275901 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 3.0e-18 96.3 75 64.0
Glyma.19G227402 Glycine max HOM05D006608 ORTHO05D008316 4.3e-17 92.4 72 61.1
Os07g0275801 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 3.6e-16 89.4 54 72.2
HPP92_017019 Vanilla planifolia HOM05D002543 ORTHO05D002990 9.3e-12 74.7 58 62.1
TAR633G0622 Trochodendron aralioides HOM05D006608 ORTHO05D008316 2.0e-06 57.0 44 61.4
GSVIVG01016616001 Vitis vinifera HOM05D002933 ORTHO05D009221 2.6e-06 56.6 175 24.6
TPR.G13990 Trifolium pratense HOM05D002933 ORTHO05D009221 3.4e-06 56.2 175 25.1
SEGI_20505 Sequoiadendron giganteum HOM05D002933 ORTHO05D009221 4.5e-06 55.8 174 27.6
CANSAT56G4077 Cannabis sativa HOM05D002933 ORTHO05D009221 7.6e-06 55.1 199 24.1
CsaV3_5G026270 Cucumis sativus L. HOM05D002933 ORTHO05D009221 7.6e-06 55.1 198 24.7
Medtr1g115410 Medicago truncatula HOM05D002933 ORTHO05D009221 9.9e-06 54.7 177 24.9


User provided reference genes

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