Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_6g00910 Fragaria vesca HOM05D003673 ORTHO05D025527 2.0e-76 289.3 173 100.0
FAN10G3644 Fragaria x ananassa HOM05D003673 ORTHO05D025527 1.4e-58 229.9 173 72.3
FAN21G3810 Fragaria x ananassa HOM05D003673 ORTHO05D025527 2.7e-57 225.7 168 73.2
FAN18G2996 Fragaria x ananassa HOM05D003673 ORTHO05D025527 7.9e-57 224.2 163 73.6
FAN25G1183 Fragaria x ananassa HOM05D003673 ORTHO05D025527 7.2e-42 174.5 89 97.8
FAN05G2105 Fragaria x ananassa HOM05D003673 ORTHO05D004764 2.5e-18 96.3 135 47.4
RcHm_v2.0_Chr2g0152141 Rosa chinensis HOM05D003673 ORTHO05D004764 3.2e-18 95.9 136 47.1
RcHm_v2.0_Chr2g0152131 Rosa chinensis HOM05D003673 ORTHO05D004764 4.2e-18 95.5 136 47.8
FAN02G0649 Fragaria x ananassa HOM05D003673 ORTHO05D004764 9.4e-18 94.4 136 44.9
FAN09G3261 Fragaria x ananassa HOM05D003673 ORTHO05D004764 9.4e-18 94.4 136 44.9
FvH4_6g38670 Fragaria vesca HOM05D003673 ORTHO05D004764 2.1e-17 93.2 133 47.4
FAN14G2563 Fragaria x ananassa HOM05D003673 ORTHO05D004764 2.1e-17 93.2 133 47.4
MD17G1134800 Malus domestica HOM05D003673 ORTHO05D004764 1.4e-13 80.5 140 39.3
Potri.002G057400 Populus trichocarpa HOM05D003673 ORTHO05D004764 3.1e-13 79.3 74 60.8
CiPaw.03G191900 Carya illinoinensis HOM05D003673 ORTHO05D004764 4.1e-13 79.0 74 59.5
MD09G1148400 Malus domestica HOM05D003673 ORTHO05D004764 1.2e-12 77.4 73 60.3
Cfa023358 Carpinus fangiana HOM05D003673 ORTHO05D004764 4.5e-12 75.5 74 55.4
CSS0042622 Camellia sinensis var. sinensis HOM05D003673 ORTHO05D004764 7.7e-12 74.7 135 40.0
Thecc.01G168800 Theobroma cacao HOM05D003673 ORTHO05D004764 1.3e-11 73.9 74 56.8
Sabra02G0046800 Salix brachista HOM05D003673 ORTHO05D004764 1.7e-11 73.6 74 56.8
Prupe.3G177700 Prunus persica HOM05D003673 ORTHO05D004764 2.9e-11 72.8 140 37.1
Dinv07089 Davidia involucrata HOM05D003673 ORTHO05D004764 3.8e-11 72.4 136 38.2
TAR626G0427 Trochodendron aralioides HOM05D003673 ORTHO05D004764 3.8e-11 72.4 134 38.8
Ciclev10031587m.g Citrus clementina HOM05D003673 ORTHO05D004764 5.0e-11 72.0 88 48.9
Haze_13556 Corylus avellana HOM05D003673 ORTHO05D004764 5.0e-11 72.0 74 52.7
Manes.02G088900 Manihot esculenta HOM05D003673 ORTHO05D004764 5.0e-11 72.0 74 58.1
Lalb_Chr04g0248921 Lupinus albus HOM05D003673 ORTHO05D004764 6.5e-11 71.6 74 52.7
Sed0005423 Sechium edule HOM05D003673 ORTHO05D004764 6.5e-11 71.6 68 54.4
PGR042G2748 Punica granatum HOM05D003673 ORTHO05D004764 1.5e-10 70.5 136 36.0
Dinv07706 Davidia involucrata HOM05D003673 ORTHO05D004764 1.9e-10 70.1 136 37.5
Hma1.2p1_0033F.1_g021200 Hydrangea macrophylla HOM05D003673 ORTHO05D004764 1.9e-10 70.1 69 60.9
Lj8C8T1 Lonicera japonica HOM05D003673 ORTHO05D004764 4.2e-10 68.9 68 52.9
ClCG11G016540 Citrullus lanatus HOM05D003673 ORTHO05D004764 5.5e-10 68.6 68 51.5
Lsat_1_v5_gn_6_42781 Lactuca sativa HOM05D003673 ORTHO05D004764 7.2e-10 68.2 135 38.5
Eucgr.A02022 Eucalyptus grandis HOM05D003673 ORTHO05D004764 1.2e-09 67.4 74 50.0
Nn7g37943 Nelumbo nucifera HOM05D003673 ORTHO05D004764 1.6e-09 67.0 129 37.2
MELO3C022961.2 Cucumis melo HOM05D003673 ORTHO05D004764 3.6e-09 65.9 68 48.5
Eucgr.A02024 Eucalyptus grandis HOM05D003673 ORTHO05D004764 3.6e-09 65.9 76 50.0
Psat2g017880 Pisum sativum HOM05D003673 ORTHO05D004764 3.6e-09 65.9 135 36.3
CAN.G7.15 Capsicum annuum HOM05D003673 ORTHO05D004764 6.1e-09 65.1 137 36.5
Sopen07g023610 Solanum pennellii HOM05D003673 ORTHO05D004764 6.1e-09 65.1 135 34.1
Thecc.01G168600 Theobroma cacao HOM05D003673 ORTHO05D004764 6.1e-09 65.1 68 52.9
COL.COLO4_38402 Corchorus olitorius HOM05D003673 ORTHO05D004764 1.0e-08 64.3 131 32.1
MD13G1156600 Malus domestica HOM05D003673 ORTHO05D004764 1.0e-08 64.3 75 48.0
CsaV3_4G032000 Cucumis sativus L. HOM05D003673 ORTHO05D004764 1.4e-08 63.9 68 47.1
Medtr1g022325 Medicago truncatula HOM05D003673 ORTHO05D004764 1.4e-08 63.9 132 35.6
Solyc07g045050.3 Solanum lycopersicum HOM05D003673 ORTHO05D004764 1.4e-08 63.9 74 45.9
PGSC0003DMG400017707 Solanum tuberosum HOM05D003673 ORTHO05D004764 1.4e-08 63.9 140 35.0
Cpa.g.sc50.111 Carica papaya HOM05D003673 ORTHO05D004764 1.8e-08 63.5 74 54.1
Lsat_1_v5_gn_2_96721 Lactuca sativa HOM05D003673 ORTHO05D004764 1.8e-08 63.5 132 34.8
LjContig00049g0013493 Lotus japonicus HOM05D003673 ORTHO05D004764 1.8e-08 63.5 132 35.6
Potri.005G205200 Populus trichocarpa HOM05D003673 ORTHO05D004764 1.8e-08 63.5 67 53.7
Nitab4.5_0000006g0440 Nicotiana tabacum HOM05D003673 ORTHO05D004764 2.3e-08 63.2 78 50.0
Carub.0001s0594 Capsella rubella HOM05D003673 ORTHO05D004764 3.0e-08 62.8 74 52.7
ECA238G4715 Erigeron canadensis HOM05D003673 ORTHO05D004764 3.0e-08 62.8 134 32.8
HanXRQChr02g0055101 Helianthus annuus HOM05D003673 ORTHO05D004764 3.0e-08 62.8 136 34.6
TWI59G0698 Tripterygium wilfordii HOM05D003673 ORTHO05D004764 3.0e-08 62.8 74 48.6
Aqoxy1G01890 Aquilegia oxysepala HOM05D003673 ORTHO05D004764 4.0e-08 62.4 68 50.0
Eucgr.A02023 Eucalyptus grandis HOM05D003673 ORTHO05D004764 4.0e-08 62.4 74 44.6
Glyma.02G284600 Glycine max HOM05D003673 ORTHO05D004764 5.2e-08 62.0 131 32.8
Nitab4.5_0002201g0040 Nicotiana tabacum HOM05D003673 ORTHO05D004764 5.2e-08 62.0 137 35.0
Actinidia24401 Actinidia chinensis HOM05D003673 ORTHO05D004764 6.8e-08 61.6 141 34.0
PGSC0003DMG400017420 Solanum tuberosum HOM05D003673 ORTHO05D004764 6.8e-08 61.6 137 33.6
COL.COLO4_38400 Corchorus olitorius HOM05D003673 ORTHO05D004764 8.8e-08 61.2 76 52.6
unitig_899.g15456 Utricularia gibba HOM05D003673 ORTHO05D004764 8.8e-08 61.2 128 35.2
Sopen05g024810 Solanum pennellii HOM05D003673 ORTHO05D004764 1.2e-07 60.8 140 33.6
arahy.Tifrunner.gnm1.ann1.I7WXBP Arachis hypogaea HOM05D003673 ORTHO05D004764 1.5e-07 60.5 154 31.8
Solyc05g041200.4 Solanum lycopersicum HOM05D003673 ORTHO05D004764 1.5e-07 60.5 140 33.6
Ca_06264_v3 Cicer arietinum L. HOM05D003673 ORTHO05D004764 2.6e-07 59.7 136 34.6
Ca_30265_v3 Cicer arietinum L. HOM05D003673 ORTHO05D004764 2.6e-07 59.7 136 34.6
MSTRG.14903 Avicennia marina HOM05D003673 ORTHO05D004764 3.4e-07 59.3 138 34.8
BcaB02g06780 Brassica carinata HOM05D003673 ORTHO05D004764 3.4e-07 59.3 75 48.0
BcaNung07075 Brassica carinata HOM05D003673 ORTHO05D004764 3.4e-07 59.3 74 47.3
arahy.Tifrunner.gnm1.ann1.FDUH0H Arachis hypogaea HOM05D003673 ORTHO05D004764 4.4e-07 58.9 133 33.8
HanXRQChr14g0451901 Helianthus annuus HOM05D003673 ORTHO05D004764 4.4e-07 58.9 134 33.6
Medtr5g091060 Medicago truncatula HOM05D003673 ORTHO05D004764 4.4e-07 58.9 136 33.1
Thhalv10007634m.g Eutrema salsugineum HOM05D003673 ORTHO05D004764 5.7e-07 58.5 74 50.0
AL1G16600 Arabidopsis lyrata HOM05D003673 ORTHO05D004764 9.8e-07 57.8 68 48.5
Sp1g05330 Schrenkiella parvula HOM05D003673 ORTHO05D004764 9.8e-07 57.8 74 48.6
AT1G06570 Arabidopsis thaliana HOM05D003673 ORTHO05D004764 1.3e-06 57.4 74 44.6
ECA233G6193 Erigeron canadensis HOM05D003673 ORTHO05D004764 1.3e-06 57.4 135 31.9
TPR.G10168 Trifolium pratense HOM05D003673 ORTHO05D004764 1.3e-06 57.4 136 33.8
A10p05210 Brassica napus HOM05D003673 ORTHO05D004764 1.7e-06 57.0 74 44.6
BraA10t42788Z Brassica rapa HOM05D003673 ORTHO05D004764 2.8e-06 56.2 74 44.6
Medtr5g090980 Medicago truncatula HOM05D003673 ORTHO05D004764 2.8e-06 56.2 79 44.3
SalBow1G2057 Salvia bowleyana HOM05D003673 ORTHO05D004764 2.8e-06 56.2 164 32.3
Peaxi162Scf00416g00004 Petunia axillaris HOM05D003673 ORTHO05D004764 3.7e-06 55.8 140 32.1
AUR62015128 Chenopodium quinoa HOM05D003673 ORTHO05D004764 4.9e-06 55.5 135 33.3
AUR62017589 Chenopodium quinoa HOM05D003673 ORTHO05D004764 4.9e-06 55.5 135 33.3
PSO210G5105 Papaver somniferum HOM05D003673 ORTHO05D004764 6.3e-06 55.1 74 39.2
C08p51160 Brassica napus HOM05D003673 ORTHO05D004764 8.3e-06 54.7 74 43.2
BolC8t52642H Brassica oleracea HOM05D003673 ORTHO05D004764 8.3e-06 54.7 74 43.2
Rhsim07G0197900 Rhododendron simsii HOM05D003673 ORTHO05D004764 8.3e-06 54.7 77 46.8


User provided reference genes

Program Settings