Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g37100 Fragaria vesca HOM05D000257 ORTHO05D045605 1.1e-81 306.6 151 100.0
FAN08G1472 Fragaria x ananassa HOM05D000257 ORTHO05D045605 1.2e-56 223.4 190 66.8
FAN13G3084 Fragaria x ananassa HOM05D000257 ORTHO05D003333 2.2e-47 192.6 174 60.9
FAN24G2796 Fragaria x ananassa HOM05D000257 ORTHO05D003333 1.1e-17 94.0 177 40.7
CiPaw.08G046000 Carya illinoinensis HOM05D000257 ORTHO05D003333 3.1e-17 92.4 133 43.6
RcHm_v2.0_Chr7g0238641 Rosa chinensis HOM05D000257 ORTHO05D003333 3.5e-16 89.0 133 43.6
Prupe.1G518700 Prunus persica HOM05D000257 ORTHO05D003333 4.5e-16 88.6 133 43.6
FvH4_2g09730 Fragaria vesca HOM05D000257 ORTHO05D003333 5.9e-16 88.2 133 43.6
FAN20G0241 Fragaria x ananassa HOM05D000257 ORTHO05D003333 5.9e-16 88.2 133 43.6
FAN24G2690 Fragaria x ananassa HOM05D000257 ORTHO05D003333 5.9e-16 88.2 133 43.6
Haze_22284 Corylus avellana HOM05D000257 ORTHO05D003333 1.3e-15 87.0 128 44.5
MD00G1009900 Malus domestica HOM05D000257 ORTHO05D003333 2.2e-15 86.3 143 41.3
Lj1g0017270 Lotus japonicus HOM05D000257 ORTHO05D003333 2.9e-15 85.9 128 43.0
CSS0038406 Camellia sinensis var. sinensis HOM05D000257 ORTHO05D003333 3.8e-15 85.5 128 42.2
CSS0046514 Camellia sinensis var. sinensis HOM05D000257 ORTHO05D003333 3.8e-15 85.5 128 42.2
Cfa013647 Carpinus fangiana HOM05D000257 ORTHO05D003333 3.8e-15 85.5 128 43.8
FAN15G1513 Fragaria x ananassa HOM05D000257 ORTHO05D003333 3.8e-15 85.5 133 42.9
QL12p037006 Quercus lobata HOM05D000257 ORTHO05D003333 3.8e-15 85.5 134 41.8
Cc10_g07080 Coffea canephora HOM05D000257 ORTHO05D003333 8.5e-15 84.3 133 41.4
Phvul.009G031800 Phaseolus vulgaris HOM05D000257 ORTHO05D003333 8.5e-15 84.3 133 41.4
vmacro21262 Vaccinium macrocarpon HOM05D000257 ORTHO05D003333 8.5e-15 84.3 142 40.8
CANSAT35G1064 Cannabis sativa HOM05D000257 ORTHO05D003333 1.1e-14 84.0 128 43.0
Nn5g30078 Nelumbo nucifera HOM05D000257 ORTHO05D003333 1.1e-14 84.0 128 43.0
TWI56G0316 Tripterygium wilfordii HOM05D000257 ORTHO05D003333 1.1e-14 84.0 133 41.4
Aa31LG9G14640 Aethionema arabicum HOM05D000257 ORTHO05D003333 1.5e-14 83.6 128 41.4
MD08G1184600 Malus domestica HOM05D000257 ORTHO05D003333 1.5e-14 83.6 128 44.5
Psat5g139680 Pisum sativum HOM05D000257 ORTHO05D003333 1.5e-14 83.6 133 39.8
PGR042G2937 Punica granatum HOM05D000257 ORTHO05D003333 1.5e-14 83.6 133 41.4
ClCG11G014140 Citrullus lanatus HOM05D000257 ORTHO05D003333 1.9e-14 83.2 127 42.5
Sed0021086 Sechium edule HOM05D000257 ORTHO05D003333 1.9e-14 83.2 127 42.5
TAR376G0347 Trochodendron aralioides HOM05D000257 ORTHO05D003333 2.5e-14 82.8 128 43.0
Ca_15254_v3 Cicer arietinum L. HOM05D000257 ORTHO05D003333 4.2e-14 82.0 143 39.2
Ca_30278_v3 Cicer arietinum L. HOM05D000257 ORTHO05D003333 4.2e-14 82.0 143 39.2
GSVIVG01009042001 Vitis vinifera HOM05D000257 ORTHO05D003333 4.2e-14 82.0 133 40.6
Oeu053212.1 Olea europaea HOM05D000257 ORTHO05D003333 5.5e-14 81.6 133 41.4
TPR.G26146 Trifolium pratense HOM05D000257 ORTHO05D003333 5.5e-14 81.6 133 39.8
AT4G08940 Arabidopsis thaliana HOM05D000257 ORTHO05D003333 7.2e-14 81.3 140 35.7
Glyma.04G100900 Glycine max HOM05D000257 ORTHO05D003333 7.2e-14 81.3 133 39.8
MSTRG.24976 Avicennia marina HOM05D000257 ORTHO05D003333 1.6e-13 80.1 128 42.2
Peaxi162Scf00392g00033 Petunia axillaris HOM05D000257 ORTHO05D003333 1.6e-13 80.1 128 41.4
PGSC0003DMG400031472 Solanum tuberosum HOM05D000257 ORTHO05D003333 1.6e-13 80.1 136 38.2
Atru.chr13.1172 Acer truncatum HOM05D000257 ORTHO05D003333 2.7e-13 79.3 129 39.5
Lalb_Chr08g0242101 Lupinus albus HOM05D000257 ORTHO05D003333 2.7e-13 79.3 128 41.4
Manes.18G066300 Manihot esculenta HOM05D000257 ORTHO05D003333 4.7e-13 78.6 128 40.6
Potri.002G097900 Populus trichocarpa HOM05D000257 ORTHO05D003333 4.7e-13 78.6 145 38.6
Sabra02G0076900 Salix brachista HOM05D000257 ORTHO05D003333 4.7e-13 78.6 128 40.6
Duzib116G0164 Durio zibethinus HOM05D000257 ORTHO05D003333 6.1e-13 78.2 128 40.6
Glyma.06G102600 Glycine max HOM05D000257 ORTHO05D003333 6.1e-13 78.2 154 36.4
Lj4P725T15 Lonicera japonica HOM05D000257 ORTHO05D003333 6.1e-13 78.2 128 39.8
Solyc04g074280.1 Solanum lycopersicum HOM05D000257 ORTHO05D003333 6.1e-13 78.2 136 37.5
BcaB01g01366 Brassica carinata HOM05D000257 ORTHO05D003333 8.0e-13 77.8 128 39.1
A09p29910 Brassica napus HOM05D000257 ORTHO05D003333 8.0e-13 77.8 138 36.2
BraA09t38551Z Brassica rapa HOM05D000257 ORTHO05D003333 8.0e-13 77.8 138 36.2
ECA247G3218 Erigeron canadensis HOM05D000257 ORTHO05D003333 8.0e-13 77.8 128 40.6
HanXRQChr02g0043471 Helianthus annuus HOM05D000257 ORTHO05D003333 8.0e-13 77.8 127 42.5
Medtr3g074730 Medicago truncatula HOM05D000257 ORTHO05D003333 8.0e-13 77.8 133 37.6
Aqoxy5G01916 Aquilegia oxysepala HOM05D000257 ORTHO05D003333 1.0e-12 77.4 128 39.8
BcaC04g20933 Brassica carinata HOM05D000257 ORTHO05D003333 1.4e-12 77.0 138 36.2
C09p37770 Brassica napus HOM05D000257 ORTHO05D003333 1.4e-12 77.0 138 36.2
BolC9t56610H Brassica oleracea HOM05D000257 ORTHO05D003333 1.4e-12 77.0 138 36.2
Ciclev10001417m.g Citrus clementina HOM05D000257 ORTHO05D003333 1.4e-12 77.0 143 38.5
THA.LOC109115979 Tarenaya hassleriana HOM05D000257 ORTHO05D003333 1.4e-12 77.0 128 39.8
Thecc.08G105300 Theobroma cacao HOM05D000257 ORTHO05D003333 1.4e-12 77.0 128 39.8
VMungo1309G2833 Vigna mungo HOM05D000257 ORTHO05D003333 1.4e-12 77.0 133 37.6
AL6G41600 Arabidopsis lyrata HOM05D000257 ORTHO05D003333 1.8e-12 76.6 128 39.1
Carub.0006s2754 Capsella rubella HOM05D000257 ORTHO05D003333 1.8e-12 76.6 128 38.3
CsaV3_3G047540 Cucumis sativus L. HOM05D000257 ORTHO05D003333 2.3e-12 76.3 127 40.2
Nitab4.5_0000232g0060 Nicotiana tabacum HOM05D000257 ORTHO05D003333 2.3e-12 76.3 133 38.3
SalBow7G3476 Salvia bowleyana HOM05D000257 ORTHO05D003333 2.3e-12 76.3 128 39.1
Sp6g08770 Schrenkiella parvula HOM05D000257 ORTHO05D003333 2.3e-12 76.3 128 38.3
Sopen04g029410 Solanum pennellii HOM05D000257 ORTHO05D003333 2.3e-12 76.3 136 36.8
Nitab4.5_0007108g0030 Nicotiana tabacum HOM05D000257 ORTHO05D003333 3.0e-12 75.9 128 39.1
Rhsim06G0080900 Rhododendron simsii HOM05D000257 ORTHO05D003333 3.0e-12 75.9 128 39.8
MELO3C003570.2 Cucumis melo HOM05D000257 ORTHO05D003333 4.0e-12 75.5 127 39.4
Migut.E00939 Erythranthe guttata HOM05D000257 ORTHO05D003333 4.0e-12 75.5 128 39.1
Cpa.g.sc36.144 Carica papaya HOM05D000257 ORTHO05D003333 5.2e-12 75.1 129 38.8
CAN.G193.31 Capsicum annuum HOM05D000257 ORTHO05D003333 6.7e-12 74.7 136 36.0
CARHR259950 Cardamine hirsuta HOM05D000257 ORTHO05D003333 6.7e-12 74.7 128 37.5
Thhalv10028699m.g Eutrema salsugineum HOM05D000257 ORTHO05D003333 1.2e-11 73.9 128 37.5
Sc01g0000500 Simmondsia chinensis HOM05D000257 ORTHO05D003333 2.0e-11 73.2 128 39.1
DCAR_007578 Daucus carota HOM05D000257 ORTHO05D003333 3.3e-11 72.4 133 38.3
Gohir.A11G321600 Gossypium hirsutum HOM05D000257 ORTHO05D003333 4.4e-11 72.0 128 38.3
PSO210G1895 Papaver somniferum HOM05D000257 ORTHO05D003333 7.5e-11 71.2 128 39.1
unitig_748.g8209 Utricularia gibba HOM05D000257 ORTHO05D003333 7.5e-11 71.2 133 36.8
EL10Ac1g01204 Beta vulgaris HOM05D000257 ORTHO05D003333 9.7e-11 70.9 156 32.7
COL.COLO4_12055 Corchorus olitorius HOM05D000257 ORTHO05D003333 9.7e-11 70.9 126 38.1
Gorai.007G370700 Gossypium raimondii HOM05D000257 ORTHO05D003333 9.7e-11 70.9 128 37.5
SHI17962 Sapria himalayana HOM05D000257 ORTHO05D003333 9.7e-11 70.9 130 36.9
Dinv14340 Davidia involucrata HOM05D000087 ORTHO05D001646 1.3e-10 70.5 62 61.3
CDE05G2971 Ceratophyllum demersum HOM05D000257 ORTHO05D003333 4.8e-10 68.6 128 36.7
AUR62018930 Chenopodium quinoa HOM05D000257 ORTHO05D003333 6.3e-10 68.2 128 36.7
AUR62027774 Chenopodium quinoa HOM05D000257 ORTHO05D003333 6.3e-10 68.2 128 36.7
PSO447G0353 Papaver somniferum HOM05D000257 ORTHO05D003333 6.3e-10 68.2 128 38.3
RcHm_v2.0_Chr7g0243921 Rosa chinensis HOM05D000257 ORTHO05D003333 8.2e-10 67.8 53 66.0
Actinidia30782 Actinidia chinensis HOM05D000257 ORTHO05D003333 3.1e-09 65.9 89 44.9
ATR0782G167 Amborella trichopoda HOM05D000257 ORTHO05D003333 3.1e-09 65.9 125 37.6
SGA_v2.0_scaffold75G24993 Striga asiatica HOM05D000257 ORTHO05D003333 4.1e-09 65.5 128 37.5
SGA_v2.0_scaffold75G24995 Striga asiatica HOM05D005357 ORTHO05D006354 4.1e-09 65.5 128 37.5
Ah.05g169870 Amaranthus hybridus HOM05D000257 ORTHO05D003333 5.3e-09 65.1 128 35.9
Zm00001eb101330 Zea mays HOM05D000257 ORTHO05D003333 9.1e-09 64.3 72 54.2
MBI05_g02440_MAGBIO Magnolia biondii HOM05D000257 ORTHO05D003333 1.2e-08 63.9 126 37.3
SGA_v2.0_scaffold69G23015 Striga asiatica HOM05D000257 ORTHO05D003333 1.6e-08 63.5 128 36.7
AUR62002426 Chenopodium quinoa HOM05D002568 ORTHO05D002814 8.5e-07 57.8 62 50.0
HPP92_011217 Vanilla planifolia HOM05D000257 ORTHO05D003333 2.5e-06 56.2 125 34.4


User provided reference genes

Program Settings