Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g35940 Fragaria vesca HOM05D004653 ORTHO05D006221 0.0e+00 1113.2 539 100.0
FAN18G1441 Fragaria x ananassa HOM05D004653 ORTHO05D006221 0.0e+00 1109.0 539 99.6
FAN04G0673 Fragaria x ananassa HOM05D004653 ORTHO05D006221 0.0e+00 1085.9 539 98.1
FAN08G1395 Fragaria x ananassa HOM05D004653 ORTHO05D006221 0.0e+00 1082.4 539 97.4
FAN13G0646 Fragaria x ananassa HOM05D004653 ORTHO05D006221 3.0e-296 1021.1 525 95.4
RcHm_v2.0_Chr7g0237681 Rosa chinensis HOM05D004653 ORTHO05D006221 9.0e-285 983.0 541 90.9
MD08G1191800 Malus domestica HOM05D004653 ORTHO05D006221 3.3e-263 911.4 544 82.4
Prupe.1G526800 Prunus persica HOM05D004653 ORTHO05D006221 1.1e-261 906.4 547 82.6
MD15G1380600 Malus domestica HOM05D004653 ORTHO05D006221 2.6e-260 901.7 543 81.8
Atru.chr13.1058 Acer truncatum HOM05D004653 ORTHO05D006221 2.2e-246 855.5 540 76.7
QL09p016947 Quercus lobata HOM05D004653 ORTHO05D006221 3.3e-242 841.6 572 74.1
COL.COLO4_11961 Corchorus olitorius HOM05D004653 ORTHO05D006221 3.0e-240 835.1 515 78.6
Ciclev10000790m.g Citrus clementina HOM05D004653 ORTHO05D006221 4.0e-240 834.7 547 75.1
GSVIVG01009125001 Vitis vinifera HOM05D004653 ORTHO05D006221 4.0e-240 834.7 471 84.1
TWI56G0982 Tripterygium wilfordii HOM05D004653 ORTHO05D006221 8.9e-240 833.6 551 75.5
Gorai.009G279800 Gossypium raimondii HOM05D004653 ORTHO05D006221 1.3e-238 829.7 535 75.5
Cfa013708 Carpinus fangiana HOM05D004653 ORTHO05D006221 3.1e-237 825.1 461 84.8
Thecc.08G066400 Theobroma cacao HOM05D004653 ORTHO05D006221 4.1e-237 824.7 466 83.0
CiPaw.07G169200 Carya illinoinensis HOM05D004653 ORTHO05D006221 5.9e-236 820.8 465 83.2
Gohir.D05G267700 Gossypium hirsutum HOM05D004653 ORTHO05D006221 5.9e-236 820.8 535 74.8
Manes.02G147500 Manihot esculenta HOM05D004653 ORTHO05D006221 5.9e-236 820.8 489 80.0
Manes.18G062000 Manihot esculenta HOM05D004653 ORTHO05D006221 1.7e-235 819.3 540 75.2
Ciclev10001057m.g Citrus clementina HOM05D004653 ORTHO05D006221 4.3e-234 814.7 468 82.1
TAR376G1013 Trochodendron aralioides HOM05D004653 ORTHO05D006221 1.2e-233 813.1 471 81.3
Hma1.2p1_0961F.1_g241730 Hydrangea macrophylla HOM05D004653 ORTHO05D006221 2.8e-233 812.0 471 81.5
CANSAT11G2183 Cannabis sativa HOM05D004653 ORTHO05D006221 3.0e-232 808.5 496 79.2
Lj1g0013887 Lotus japonicus HOM05D004653 ORTHO05D006221 6.8e-232 807.4 539 73.1
Potri.002G102600 Populus trichocarpa HOM05D004653 ORTHO05D006221 3.4e-231 805.1 465 81.9
CSS0037453 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 1.7e-230 802.7 551 72.6
Actinidia30803 Actinidia chinensis HOM05D004653 ORTHO05D006221 2.2e-230 802.4 538 72.9
arahy.Tifrunner.gnm1.ann1.QAT0QL Arachis hypogaea HOM05D004653 ORTHO05D006221 3.7e-230 801.6 538 72.3
Haze_22352 Corylus avellana HOM05D004653 ORTHO05D006221 3.2e-229 798.5 625 66.9
Phvul.009G037700 Phaseolus vulgaris HOM05D004653 ORTHO05D006221 5.4e-229 797.7 536 73.1
VMungo1309G1466 Vigna mungo HOM05D004653 ORTHO05D006221 5.4e-229 797.7 497 77.1
Nn1g05497 Nelumbo nucifera HOM05D004653 ORTHO05D006221 7.0e-229 797.3 474 79.7
MBI06_g18790_MAGBIO Magnolia biondii HOM05D004653 ORTHO05D006221 2.7e-228 795.4 561 71.8
Lalb_Chr23g0270281 Lupinus albus HOM05D004653 ORTHO05D006221 4.6e-228 794.7 465 80.2
ClCG11G014410 Citrullus lanatus HOM05D004653 ORTHO05D006221 1.3e-227 793.1 490 77.1
Cpa.g.sc36.204 Carica papaya HOM05D004653 ORTHO05D006221 3.0e-227 792.0 460 81.7
MELO3C003541.2 Cucumis melo HOM05D004653 ORTHO05D006221 8.6e-227 790.4 536 72.9
PSO541G1602 Papaver somniferum HOM05D004653 ORTHO05D006221 2.5e-226 788.9 538 72.1
PGR031G0949 Punica granatum HOM05D004653 ORTHO05D006221 4.3e-226 788.1 542 72.5
Lj4C92G16 Lonicera japonica HOM05D004653 ORTHO05D006221 7.3e-226 787.3 471 79.2
PSO675G8871 Papaver somniferum HOM05D004653 ORTHO05D006221 7.3e-226 787.3 540 71.5
Solyc03g113780.3 Solanum lycopersicum HOM05D004653 ORTHO05D006221 2.1e-225 785.8 537 71.9
Psat5g045400 Pisum sativum HOM05D004653 ORTHO05D006221 2.8e-225 785.4 539 70.3
Migut.I00061 Erythranthe guttata HOM05D004653 ORTHO05D006221 1.4e-224 783.1 543 71.8
Medtr3g100890 Medicago truncatula HOM05D004653 ORTHO05D006221 1.4e-224 783.1 538 71.2
Lalb_Chr11g0065151 Lupinus albus HOM05D004653 ORTHO05D006221 1.8e-224 782.7 467 79.2
Sopen03g032830 Solanum pennellii HOM05D004653 ORTHO05D006221 1.8e-224 782.7 531 72.5
TPR.G26053 Trifolium pratense HOM05D004653 ORTHO05D006221 3.1e-224 781.9 502 74.3
Sed0021217 Sechium edule HOM05D004653 ORTHO05D006221 1.2e-223 780.0 539 72.2
TWI36G0595 Tripterygium wilfordii HOM05D004653 ORTHO05D006221 2.6e-223 778.9 469 79.7
THA.LOC104799811 Tarenaya hassleriana HOM05D004653 ORTHO05D006221 3.4e-223 778.5 519 72.3
AT5G49970 Arabidopsis thaliana HOM05D004653 ORTHO05D006221 2.9e-222 775.4 516 72.7
CSS0025013 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 6.4e-222 774.2 471 77.9
CsaV3_3G047810 Cucumis sativus L. HOM05D004653 ORTHO05D006221 8.3e-222 773.9 465 78.1
Sabra02G0080400 Salix brachista HOM05D004653 ORTHO05D006221 1.9e-221 772.7 622 64.8
AL8G23940 Arabidopsis lyrata HOM05D004653 ORTHO05D006221 2.4e-221 772.3 520 72.1
PGSC0003DMG401024581 Solanum tuberosum HOM05D004653 ORTHO05D006221 4.1e-221 771.5 530 72.1
TAR628G1442 Trochodendron aralioides HOM05D004653 ORTHO05D006221 4.1e-221 771.5 472 77.3
CAN.G853.18 Capsicum annuum HOM05D004653 ORTHO05D006221 5.4e-221 771.2 481 76.1
Ca_15984_v3 Cicer arietinum L. HOM05D004653 ORTHO05D006221 5.4e-221 771.2 461 78.3
Aqoxy6G01474 Aquilegia oxysepala HOM05D004653 ORTHO05D006221 2.7e-220 768.8 472 76.5
Carub.0008s0987 Capsella rubella HOM05D004653 ORTHO05D006221 2.7e-220 768.8 548 69.0
MSTRG.23086 Avicennia marina HOM05D004653 ORTHO05D006221 3.5e-220 768.5 539 70.3
Sp6g11760 Schrenkiella parvula HOM05D004653 ORTHO05D006221 3.5e-220 768.5 522 71.5
Thhalv10013217m.g Eutrema salsugineum HOM05D004653 ORTHO05D006221 2.3e-219 765.8 538 68.4
AUR62027845 Chenopodium quinoa HOM05D004653 ORTHO05D006221 6.6e-219 764.2 541 70.4
Gohir.A05G265600 Gossypium hirsutum HOM05D004653 ORTHO05D006221 6.6e-219 764.2 535 71.4
CARHR258740 Cardamine hirsuta HOM05D004653 ORTHO05D006221 1.5e-218 763.1 459 76.9
arahy.Tifrunner.gnm1.ann1.Y1WP0G Arachis hypogaea HOM05D004653 ORTHO05D006221 2.5e-218 762.3 517 72.0
HanXRQChr02g0047071 Helianthus annuus HOM05D004653 ORTHO05D006221 2.5e-218 762.3 506 72.5
SGA_v2.0_scaffold25G10868 Striga asiatica HOM05D004653 ORTHO05D006221 5.6e-218 761.1 546 68.7
SalBow5G1317 Salvia bowleyana HOM05D004653 ORTHO05D006221 4.7e-217 758.1 543 68.7
BraA03t11972Z Brassica rapa HOM05D004653 ORTHO05D006221 3.1e-216 755.4 475 74.5
AUR62019003 Chenopodium quinoa HOM05D004653 ORTHO05D006221 5.2e-216 754.6 544 69.9
A03p27590 Brassica napus HOM05D004653 ORTHO05D006221 6.8e-216 754.2 475 74.7
Eucgr.F02123 Eucalyptus grandis HOM05D004653 ORTHO05D006221 8.9e-216 753.8 546 69.2
Aa31sc34G110 Aethionema arabicum HOM05D004653 ORTHO05D006221 4.4e-215 751.5 538 68.0
Hund26999 Selenicereus undatus HOM05D004653 ORTHO05D006221 4.4e-215 751.5 559 67.8
DCAR_012873 Daucus carota HOM05D004653 ORTHO05D006221 9.9e-215 750.4 494 74.3
ATR0022G001 Amborella trichopoda HOM05D004653 ORTHO05D006221 2.9e-214 748.8 534 68.7
BcaB01g02929 Brassica carinata HOM05D004653 ORTHO05D006221 2.9e-214 748.8 539 68.8
BcaC01g04840 Brassica carinata HOM05D004653 ORTHO05D006221 8.3e-214 747.3 475 74.5
BolC3t15652H Brassica oleracea HOM05D004653 ORTHO05D006221 1.6e-212 743.0 475 74.1
C03p33300 Brassica napus HOM05D004653 ORTHO05D006221 2.7e-212 742.3 475 74.1
CDE05G0914 Ceratophyllum demersum HOM05D004653 ORTHO05D006221 1.7e-211 739.6 471 73.2
ECA247G2604 Erigeron canadensis HOM05D004653 ORTHO05D006221 2.3e-211 739.2 461 76.4
Lsat_1_v5_gn_1_2401 Lactuca sativa HOM05D004653 ORTHO05D006221 4.3e-210 734.9 487 72.3
Rhsim06G0074900 Rhododendron simsii HOM05D004653 ORTHO05D006221 6.2e-209 731.1 493 72.4
Os10g0377800 Oryza sativa ssp. japonica HOM05D004653 ORTHO05D006221 3.8e-206 721.8 461 73.5
vmacro22331 Vaccinium macrocarpon HOM05D004653 ORTHO05D006221 2.1e-204 716.1 659 58.3
EL10Ac1g01097 Beta vulgaris HOM05D004653 ORTHO05D006221 1.0e-203 713.8 512 68.8
Glyma.04G093600 Glycine max HOM05D004653 ORTHO05D006221 1.7e-203 713.0 462 74.7
Cc04_g13590 Coffea canephora HOM05D004653 ORTHO05D006221 1.6e-201 706.4 436 75.2
HPP92_004087 Vanilla planifolia HOM05D004653 ORTHO05D006221 1.2e-199 700.3 491 69.5
Nitab4.5_0000642g0300 Nicotiana tabacum HOM05D004653 ORTHO05D006221 2.6e-199 699.1 455 74.1
Sc01g0000970 Simmondsia chinensis HOM05D004653 ORTHO05D006221 3.4e-199 698.7 421 77.7
Sc01g0000980 Simmondsia chinensis HOM05D004653 ORTHO05D006221 1.3e-198 696.8 421 77.4
HPP92_004102 Vanilla planifolia HOM05D004653 ORTHO05D006221 2.9e-198 695.7 491 69.2
unitig_26.g9628 Utricularia gibba HOM05D004653 ORTHO05D006221 1.3e-193 680.2 458 70.5
Dinv44830 Davidia involucrata HOM05D004653 ORTHO05D006221 4.8e-193 678.3 429 78.1
Oeu042971.1 Olea europaea HOM05D004653 ORTHO05D006221 1.8e-192 676.4 439 73.8
MBI02_g18292_MAGBIO Magnolia biondii HOM05D004653 ORTHO05D006221 3.1e-192 675.6 471 69.2
CAN.G853.20 Capsicum annuum HOM05D004653 ORTHO05D006221 5.1e-187 658.3 464 65.7
Oeu042973.1 Olea europaea HOM05D004653 ORTHO05D006221 1.1e-186 657.1 421 74.3
Cc07_g19270 Coffea canephora HOM05D004653 ORTHO05D006221 9.6e-186 654.1 462 66.2
Mapoly0107s0030 Marchantia polymorpha HOM05D004653 ORTHO05D006221 4.9e-182 641.7 462 66.7
Sopen03g032820 Solanum pennellii HOM05D004653 ORTHO05D006221 4.9e-182 641.7 464 65.5
Solyc03g113770.3 Solanum lycopersicum HOM05D004653 ORTHO05D006221 1.8e-179 633.3 464 64.7
Pp3c2_19610 Physcomitrium patens HOM05D004653 ORTHO05D006221 3.7e-177 625.5 473 62.8
SMO356G0546 Selaginella moellendorffii HOM05D004653 ORTHO05D006221 1.1e-176 624.0 447 66.9
Migut.I00062 Erythranthe guttata HOM05D004653 ORTHO05D006221 4.0e-176 622.1 459 65.4
SGA_v2.0_scaffold467G52033 Striga asiatica HOM05D004653 ORTHO05D006221 1.1e-173 614.0 462 65.2
Nitab4.5_0007586g0050 Nicotiana tabacum HOM05D004653 ORTHO05D006221 3.9e-171 605.5 463 63.9
Oeu018527.2 Olea europaea HOM05D004653 ORTHO05D006221 3.4e-167 592.4 472 64.2
CSS0007986 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 5.9e-167 591.7 358 78.8
SalBow5G2478 Salvia bowleyana HOM05D004653 ORTHO05D006221 7.2e-165 584.7 458 61.4
Peaxi162Scf00017g00233 Petunia axillaris HOM05D004653 ORTHO05D006221 1.1e-160 570.9 487 58.9
AagrBONN_evm.TU.Sc2ySwM_368.1227 Anthoceros agrestis HOM05D004653 ORTHO05D006221 1.7e-150 537.0 472 57.4
MSTRG.23084 Avicennia marina HOM05D004653 ORTHO05D006221 1.0e-139 501.1 355 69.3
Nitab4.5_0024258g0010 Nicotiana tabacum HOM05D004653 ORTHO05D006221 5.2e-139 498.8 311 76.5
PGSC0003DMG400024580 Solanum tuberosum HOM05D004653 ORTHO05D006221 3.5e-119 433.0 421 51.8
Cre08.g378200 Chlamydomonas reinhardtii HOM05D004653 ORTHO05D006221 2.3e-118 430.3 503 47.9
Zm00001eb027880 Zea mays HOM05D004653 ORTHO05D006221 3.1e-115 419.9 268 74.6
Lalb_Chr23g0270171 Lupinus albus HOM05D004653 ORTHO05D006221 1.2e-114 417.9 255 75.3
MBI17_g06166_MAGBIO Magnolia biondii HOM05D004653 ORTHO05D006221 1.5e-114 417.5 316 66.1
CSS0017284 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 3.9e-102 376.3 261 69.7
Actinidia10360 Actinidia chinensis HOM05D004653 ORTHO05D006221 1.1e-99 368.2 366 55.7
CBR_g24311 Chara braunii HOM05D000019 ORTHO05D000353 4.2e-88 329.7 281 56.2
SEGI_17033 Sequoiadendron giganteum HOM05D004653 ORTHO05D006221 1.5e-85 321.2 214 68.2
Glyma.06G095500 Glycine max HOM05D004653 ORTHO05D006221 1.3e-84 318.2 239 67.8
MCO02G367 Micromonas commoda HOM05D004653 ORTHO05D006221 2.8e-76 290.4 242 58.3
Duzib116G0761 Durio zibethinus HOM05D004653 ORTHO05D006221 7.9e-71 272.3 169 80.5
Lalb_Chr23g0270161 Lupinus albus HOM05D004653 ORTHO05D006221 8.2e-60 235.7 144 79.2
CBR_g24313 Chara braunii HOM05D004653 ORTHO05D006221 4.8e-52 209.9 164 62.8
Glyma.06G095451 Glycine max HOM05D004653 ORTHO05D006221 1.3e-44 185.3 178 57.9
Nitab4.5_0005655g0030 Nicotiana tabacum HOM05D004653 ORTHO05D006221 2.8e-44 184.1 113 73.5
Dinv42645 Davidia involucrata HOM05D004653 ORTHO05D006221 4.1e-43 180.3 183 55.2
Cc06_g21090 Coffea canephora HOM05D004653 ORTHO05D006221 1.7e-41 174.9 100 84.0
SEGI_12419 Sequoiadendron giganteum HOM05D004653 ORTHO05D006221 1.0e-38 165.6 91 79.1
Potri.005G159500 Populus trichocarpa HOM05D004653 ORTHO05D006221 1.3e-36 158.7 115 69.6
CSS0010132 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 7.7e-34 149.4 152 53.9
Dinv42644 Davidia involucrata HOM05D004653 ORTHO05D006221 5.7e-21 106.7 113 55.8
PRCOL_00006962 Prasinoderma coloniale HOM05D004653 ORTHO05D006221 4.7e-15 87.0 61 57.4
Gohir.A06G032660 Gossypium hirsutum HOM05D004653 ORTHO05D019566 9.8e-13 79.3 49 81.6
Gorai.010G036500 Gossypium raimondii HOM05D004653 ORTHO05D019566 9.8e-13 79.3 49 81.6
Lalb_Chr23g0270181 Lupinus albus HOM05D004653 ORTHO05D019566 9.8e-13 79.3 62 69.4
BcaB08g35370 Brassica carinata HOM05D004653 ORTHO05D006221 2.9e-09 67.8 57 54.4
CSS0005277 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D019566 3.3e-08 64.3 60 60.0
ATR1171G001 Amborella trichopoda HOM05D004653 ORTHO05D019566 2.8e-07 61.2 103 45.6


User provided reference genes

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