Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g34870 Fragaria vesca HOM05D006001 ORTHO05D006714 1.6e-151 540.0 406 100.0
FAN18G3411 Fragaria x ananassa HOM05D006001 ORTHO05D006714 3.6e-143 512.3 406 93.8
FAN08G3160 Fragaria x ananassa HOM05D006001 ORTHO05D006714 2.2e-129 466.5 406 86.7
FAN13G1830 Fragaria x ananassa HOM05D006001 ORTHO05D006714 3.1e-123 446.0 406 87.7
RcHm_v2.0_Chr7g0235791 Rosa chinensis HOM05D006001 ORTHO05D006714 1.4e-115 420.6 409 78.0
Prupe.1G533200 Prunus persica HOM05D006001 ORTHO05D006714 1.9e-67 260.8 443 57.1
MD08G1199700 Malus domestica HOM05D006001 ORTHO05D006714 2.7e-58 230.3 420 50.5
Cfa013804 Carpinus fangiana HOM05D006001 ORTHO05D006714 4.8e-31 139.8 461 29.9
CiPaw.03G148200 Carya illinoinensis HOM05D006001 ORTHO05D006714 3.1e-30 137.1 452 30.8
Haze_22467 Corylus avellana HOM05D006001 ORTHO05D006714 8.5e-28 129.0 461 30.2
QL09p017955 Quercus lobata HOM05D006001 ORTHO05D006714 5.5e-27 126.3 436 30.3
Thecc.08G071800 Theobroma cacao HOM05D006001 ORTHO05D006714 1.2e-26 125.2 436 30.3
Haze_22468 Corylus avellana HOM05D006001 ORTHO05D006714 8.0e-26 122.5 423 43.0
CiPaw.07G164600 Carya illinoinensis HOM05D006001 ORTHO05D006714 3.9e-25 120.2 437 28.1
COL.COLO4_35255 Corchorus olitorius HOM05D006001 ORTHO05D006714 2.8e-23 114.0 199 41.7
QL12p023212 Quercus lobata HOM05D006001 ORTHO05D006714 4.8e-23 113.2 436 28.7
TAR381G0479 Trochodendron aralioides HOM05D006001 ORTHO05D006714 4.1e-22 110.2 193 40.4
GSVIVG01009188001 Vitis vinifera HOM05D006001 ORTHO05D006714 4.5e-21 106.7 441 27.9
Dinv42605 Davidia involucrata HOM05D006001 ORTHO05D006714 1.7e-20 104.8 194 39.2
Manes.18G058066 Manihot esculenta HOM05D006001 ORTHO05D006714 5.0e-20 103.2 436 29.1
ClCG09G016810 Citrullus lanatus HOM05D006001 ORTHO05D006714 7.2e-19 99.4 428 29.9
MELO3C021835.2 Cucumis melo HOM05D006001 ORTHO05D006714 4.7e-18 96.7 430 27.4
Duzib128G1071 Durio zibethinus HOM05D006001 ORTHO05D006714 8.0e-18 95.9 442 27.6
Sc04g0007160 Simmondsia chinensis HOM05D006001 ORTHO05D006714 1.4e-17 95.1 185 38.9
Gohir.A05G320600 Gossypium hirsutum HOM05D006001 ORTHO05D006714 3.0e-17 94.0 189 37.6
PGR042G0630 Punica granatum HOM05D006001 ORTHO05D006714 3.0e-17 94.0 203 36.5
TWI56G0486 Tripterygium wilfordii HOM05D006001 ORTHO05D006714 1.2e-16 92.0 426 31.2
Rhsim07G0212300 Rhododendron simsii HOM05D006001 ORTHO05D006714 2.0e-16 91.3 131 47.3
Duzib106G1137 Durio zibethinus HOM05D006001 ORTHO05D006714 3.4e-16 90.5 194 38.7
Potri.005G153300 Populus trichocarpa HOM05D006001 ORTHO05D006714 4.4e-16 90.1 444 29.3
Potri.002G111500 Populus trichocarpa HOM05D006001 ORTHO05D006714 1.7e-15 88.2 214 37.4
LjContig00408g0013719 Lotus japonicus HOM05D006001 ORTHO05D006714 2.2e-15 87.8 191 36.6
Gorai.009G346500 Gossypium raimondii HOM05D006001 ORTHO05D006714 2.8e-15 87.4 189 36.0
TWI12G0152 Tripterygium wilfordii HOM05D006001 ORTHO05D006714 3.7e-15 87.0 392 25.8
Gohir.D05G322800 Gossypium hirsutum HOM05D006001 ORTHO05D006714 4.8e-15 86.7 189 36.0
MELO3C008828.2 Cucumis melo HOM05D006001 ORTHO05D006714 6.3e-15 86.3 430 27.4
CSS0018086 Camellia sinensis var. sinensis HOM05D006001 ORTHO05D006714 3.5e-13 80.5 133 42.1
Ciclev10001506m.g Citrus clementina HOM05D006001 ORTHO05D006714 3.5e-13 80.5 450 29.8
MBI16_g12475_MAGBIO Magnolia biondii HOM05D006001 ORTHO05D006714 4.5e-13 80.1 198 34.8
CsaV3_2G036230 Cucumis sativus L. HOM05D006001 ORTHO05D006714 7.7e-13 79.3 427 24.6
CANSAT11G1699 Cannabis sativa HOM05D006001 ORTHO05D006714 1.3e-12 78.6 424 27.1
Nn6g34170 Nelumbo nucifera HOM05D006001 ORTHO05D006714 1.3e-12 78.6 157 40.1
Sabra02G0088000 Salix brachista HOM05D006001 ORTHO05D006714 1.3e-12 78.6 212 34.0
Glyma.14G182400 Glycine max HOM05D006001 ORTHO05D006714 3.8e-12 77.0 192 34.4
TAR376G0788 Trochodendron aralioides HOM05D006001 ORTHO05D006714 1.5e-11 75.1 131 39.7
Oeu063699.1 Olea europaea HOM05D006001 ORTHO05D006714 1.9e-11 74.7 439 26.2
PSO170G4643 Papaver somniferum HOM05D006001 ORTHO05D006714 3.2e-11 73.9 173 34.7
Actinidia19626 Actinidia chinensis HOM05D006001 ORTHO05D006714 5.5e-11 73.2 132 41.7
Nitab4.5_0000354g0120 Nicotiana tabacum HOM05D006001 ORTHO05D006714 5.5e-11 73.2 420 33.1
Carub.0007s1657 Capsella rubella HOM05D006001 ORTHO05D006714 7.2e-11 72.8 105 41.0
Atru.chr13.1002 Acer truncatum HOM05D006001 ORTHO05D006714 1.2e-10 72.0 413 30.3
Eucgr.H00032 Eucalyptus grandis HOM05D006001 ORTHO05D006714 1.2e-10 72.0 448 24.8
Nn5g29866 Nelumbo nucifera HOM05D006001 ORTHO05D006714 1.6e-10 71.6 198 34.3
PSO210G5625 Papaver somniferum HOM05D006001 ORTHO05D006714 2.7e-10 70.9 176 34.1
DCAR_023481 Daucus carota HOM05D006001 ORTHO05D006714 4.7e-10 70.1 188 35.1
Glyma.02G215100 Glycine max HOM05D006001 ORTHO05D006714 6.1e-10 69.7 191 32.5
Cpa.g.c29936.2 Carica papaya HOM05D006001 ORTHO05D006714 8.0e-10 69.3 168 32.1
SEGI_15482 Sequoiadendron giganteum HOM05D006001 ORTHO05D006714 8.0e-10 69.3 190 33.7
EL10Ac1g00506 Beta vulgaris HOM05D034668 ORTHO05D006714 1.0e-09 68.9 187 34.8
CDE06G1720 Ceratophyllum demersum HOM05D006001 ORTHO05D006714 1.0e-09 68.9 135 40.0
Eucgr.L02666 Eucalyptus grandis HOM05D006001 ORTHO05D006714 1.0e-09 68.9 448 24.6
Hund26817 Selenicereus undatus HOM05D006001 ORTHO05D006714 1.4e-09 68.6 160 38.8
BcaC09g50862 Brassica carinata HOM05D006001 ORTHO05D006714 1.8e-09 68.2 118 40.7
PGSC0003DMG400002050 Solanum tuberosum HOM05D006001 ORTHO05D006714 6.8e-09 66.2 186 33.9
Aa31LG4G9600 Aethionema arabicum HOM05D006001 ORTHO05D006714 8.8e-09 65.9 193 33.7
CARHR231890 Cardamine hirsuta HOM05D006001 ORTHO05D006714 8.8e-09 65.9 177 35.0
AT4G24500 Arabidopsis thaliana HOM05D006001 ORTHO05D006714 2.6e-08 64.3 176 33.5
BcaC06g32880 Brassica carinata HOM05D006001 ORTHO05D006714 3.4e-08 63.9 124 39.5
A03p55330 Brassica napus HOM05D006001 ORTHO05D006714 3.4e-08 63.9 179 33.0
C07p53620 Brassica napus HOM05D006001 ORTHO05D006714 3.4e-08 63.9 124 39.5
Lalb_Chr17g0344581 Lupinus albus HOM05D006001 ORTHO05D006714 3.4e-08 63.9 112 40.2
Sed0021655 Sechium edule HOM05D006001 ORTHO05D006714 4.4e-08 63.5 95 46.3
Thhalv10025760m.g Eutrema salsugineum HOM05D006001 ORTHO05D006714 5.7e-08 63.2 106 42.5
Peaxi162Scf00160g00103 Petunia axillaris HOM05D006001 ORTHO05D006714 5.7e-08 63.2 423 25.5
BraA01t01521Z Brassica rapa HOM05D002298 ORTHO05D006714 7.5e-08 62.8 120 40.0
BolC1t01909H Brassica oleracea HOM05D002298 ORTHO05D006714 9.8e-08 62.4 119 39.5
CAN.G1700.2 Capsicum annuum HOM05D006001 ORTHO05D006714 9.8e-08 62.4 413 33.7
Aqoxy5G01371 Aquilegia oxysepala HOM05D006001 ORTHO05D006714 2.2e-07 61.2 175 31.4
C01p19810 Brassica napus HOM05D002298 ORTHO05D006714 2.8e-07 60.8 148 37.2
Sp7g22490 Schrenkiella parvula HOM05D006001 ORTHO05D006714 3.7e-07 60.5 104 40.4
A01p15870 Brassica napus HOM05D002298 ORTHO05D006714 6.3e-07 59.7 115 40.0
BolC7t45854H Brassica oleracea HOM05D006001 ORTHO05D006714 6.3e-07 59.7 195 31.3
Ca_05452_v3 Cicer arietinum L. HOM05D006001 ORTHO05D006714 1.1e-06 58.9 196 29.6
Migut.C00706 Erythranthe guttata HOM05D006001 ORTHO05D006714 1.4e-06 58.5 129 37.2
Phvul.008G182500 Phaseolus vulgaris HOM05D006001 ORTHO05D006714 1.8e-06 58.2 193 33.7
Solyc12g087990.3 Solanum lycopersicum HOM05D006001 ORTHO05D006714 1.8e-06 58.2 188 34.0
Sopen12g030020 Solanum pennellii HOM05D006001 ORTHO05D006714 7.0e-06 56.2 191 33.0
arahy.Tifrunner.gnm1.ann1.5459VI Arachis hypogaea HOM05D006001 ORTHO05D006714 9.1e-06 55.8 195 28.7
Dinv44865 Davidia involucrata HOM05D006001 ORTHO05D006714 9.1e-06 55.8 97 36.1


User provided reference genes

Program Settings