Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g33050 Fragaria vesca HOM05D002268 ORTHO05D006937 1.2e-272 942.6 485 100.0
FAN18G3947 Fragaria x ananassa HOM05D002268 ORTHO05D006937 1.9e-262 908.7 481 96.9
RcHm_v2.0_Chr7g0231131 Rosa chinensis HOM05D002268 ORTHO05D006937 1.8e-236 822.4 484 89.5
MD11G1196700 Malus domestica HOM05D002268 ORTHO05D006937 5.4e-212 741.1 494 75.5
Prupe.5G028600 Prunus persica HOM05D002268 ORTHO05D006937 1.2e-211 740.0 478 77.8
MD03G1176400 Malus domestica HOM05D002268 ORTHO05D006937 1.6e-211 739.6 491 75.8
QL01p004788 Quercus lobata HOM05D002268 ORTHO05D006937 1.9e-204 716.1 478 73.6
GSVIVG01025274001 Vitis vinifera HOM05D002268 ORTHO05D006937 5.0e-202 708.0 475 73.5
CsaV3_4G024220 Cucumis sativus L. HOM05D002268 ORTHO05D006937 6.6e-202 707.6 489 72.6
Haze_23130 Corylus avellana HOM05D002268 ORTHO05D006937 3.3e-201 705.3 489 72.4
MELO3C014598.2 Cucumis melo HOM05D002268 ORTHO05D006937 9.5e-201 703.7 490 71.2
Sed0017829 Sechium edule HOM05D002268 ORTHO05D006937 8.1e-200 700.7 486 71.8
Sc16g0011510 Simmondsia chinensis HOM05D002268 ORTHO05D006937 2.6e-198 695.7 479 72.2
Gorai.009G073000 Gossypium raimondii HOM05D002268 ORTHO05D006937 1.1e-196 690.3 488 70.3
Lalb_Chr19g0138111 Lupinus albus HOM05D002268 ORTHO05D006937 1.1e-196 690.3 423 77.1
CiPaw.14G119300 Carya illinoinensis HOM05D002268 ORTHO05D006937 1.4e-196 689.9 473 71.7
COL.COLO4_24897 Corchorus olitorius HOM05D002268 ORTHO05D006937 4.1e-196 688.3 462 73.4
arahy.Tifrunner.gnm1.ann1.8VL3CN Arachis hypogaea HOM05D002268 ORTHO05D006937 9.2e-196 687.2 478 72.6
TWI60G0297 Tripterygium wilfordii HOM05D002268 ORTHO05D006937 3.5e-195 685.3 459 71.5
Ca_11284_v3 Cicer arietinum L. HOM05D002268 ORTHO05D006937 4.6e-195 684.9 459 72.1
Ca_30227_v3 Cicer arietinum L. HOM05D002268 ORTHO05D006937 4.6e-195 684.9 459 72.1
Atru.chr3.2733 Acer truncatum HOM05D002268 ORTHO05D006937 7.8e-195 684.1 489 70.3
arahy.Tifrunner.gnm1.ann1.02894U Arachis hypogaea HOM05D002268 ORTHO05D006937 1.0e-194 683.7 482 71.4
arahy.Tifrunner.gnm1.ann1.VSBS4R Arachis hypogaea HOM05D002268 ORTHO05D006937 3.9e-194 681.8 478 72.0
arahy.Tifrunner.gnm1.ann1.6XYC84 Arachis hypogaea HOM05D002268 ORTHO05D006937 6.6e-194 681.0 490 71.0
ClCG02G023280 Citrullus lanatus HOM05D002268 ORTHO05D006937 6.6e-194 681.0 500 68.4
Duzib168G2040 Durio zibethinus HOM05D002268 ORTHO05D006937 8.6e-194 680.6 420 76.9
Nitab4.5_0006994g0060 Nicotiana tabacum HOM05D002268 ORTHO05D006937 1.5e-193 679.9 484 69.6
Gohir.D05G072000 Gossypium hirsutum HOM05D002268 ORTHO05D006937 5.6e-193 677.9 488 69.1
Cpa.g.sc84.62 Carica papaya HOM05D002268 ORTHO05D006937 2.8e-192 675.6 420 75.5
Lj3g0006923 Lotus japonicus HOM05D002268 ORTHO05D006937 2.8e-192 675.6 417 76.0
vmacro19340 Vaccinium macrocarpon HOM05D002268 ORTHO05D006937 3.6e-192 675.2 475 70.7
PGR102G0832 Punica granatum HOM05D002268 ORTHO05D006937 4.7e-192 674.9 476 70.6
Ah.04g161910 Amaranthus hybridus HOM05D002268 ORTHO05D006937 6.2e-192 674.5 494 69.6
arahy.Tifrunner.gnm1.ann1.AYE0CN Arachis hypogaea HOM05D002268 ORTHO05D006937 1.4e-191 673.3 481 70.3
CAN.G956.10 Capsicum annuum HOM05D002268 ORTHO05D006937 2.3e-191 672.5 473 70.0
Glyma.11G133500 Glycine max HOM05D002268 ORTHO05D006937 3.1e-191 672.2 479 69.1
EL10Ac4g10259 Beta vulgaris HOM05D002268 ORTHO05D006937 4.0e-191 671.8 486 70.0
EL10Ac4g10275 Beta vulgaris HOM05D002268 ORTHO05D006937 6.8e-191 671.0 486 70.0
DCAR_000723 Daucus carota HOM05D002268 ORTHO05D006937 6.8e-191 671.0 473 70.0
Potri.001G259000 Populus trichocarpa HOM05D002268 ORTHO05D006937 8.9e-191 670.6 486 70.2
Medtr4g065023 Medicago truncatula HOM05D002268 ORTHO05D006937 1.2e-190 670.2 465 69.0
Cc09_g04150 Coffea canephora HOM05D002268 ORTHO05D006937 1.5e-190 669.8 497 68.0
Psat7g212760 Pisum sativum HOM05D002268 ORTHO05D006937 1.5e-190 669.8 464 70.3
MBI04_g17077_MAGBIO Magnolia biondii HOM05D002268 ORTHO05D006937 3.4e-190 668.7 484 74.2
Rhsim01G0191500 Rhododendron simsii HOM05D002268 ORTHO05D006937 3.4e-190 668.7 474 71.3
Nitab4.5_0005819g0070 Nicotiana tabacum HOM05D002268 ORTHO05D006937 4.4e-190 668.3 485 69.5
PGSC0003DMG400003844 Solanum tuberosum HOM05D002268 ORTHO05D006937 4.4e-190 668.3 474 68.8
Solyc09g074100.4 Solanum lycopersicum HOM05D002268 ORTHO05D006937 7.6e-190 667.5 481 68.6
Phvul.011G059600 Phaseolus vulgaris HOM05D002268 ORTHO05D006937 1.3e-189 666.8 466 70.0
Hma1.2p1_0861F.1_g229700 Hydrangea macrophylla HOM05D002268 ORTHO05D006937 6.4e-189 664.5 463 71.1
Sopen09g028920 Solanum pennellii HOM05D002268 ORTHO05D006937 8.4e-189 664.1 481 68.0
Eucgr.B03681 Eucalyptus grandis HOM05D002268 ORTHO05D006937 2.4e-188 662.5 406 78.3
VMungo1127G0743 Vigna mungo HOM05D002268 ORTHO05D006937 1.2e-187 660.2 485 68.2
Nn7g36125 Nelumbo nucifera HOM05D002268 ORTHO05D006937 1.6e-187 659.8 466 70.0
CARHR041380 Cardamine hirsuta HOM05D002268 ORTHO05D006937 2.1e-187 659.4 452 71.2
Aqoxy1G00300 Aquilegia oxysepala HOM05D002268 ORTHO05D006937 2.7e-187 659.1 454 72.2
BcaB02g11231 Brassica carinata HOM05D002268 ORTHO05D006937 6.0e-187 657.9 479 68.1
Carub.0008s0647 Capsella rubella HOM05D002268 ORTHO05D006937 7.8e-187 657.5 464 69.8
Thhalv10011432m.g Eutrema salsugineum HOM05D002268 ORTHO05D006937 7.8e-187 657.5 465 69.5
Carub.0001s4017 Capsella rubella HOM05D002268 ORTHO05D006937 1.3e-186 656.8 467 70.0
Aa31LG10G3500 Aethionema arabicum HOM05D002268 ORTHO05D006937 1.7e-186 656.4 466 69.7
AUR62019294 Chenopodium quinoa HOM05D002268 ORTHO05D006937 1.7e-186 656.4 400 77.8
Lj2A631G13 Lonicera japonica HOM05D002268 ORTHO05D006937 1.7e-186 656.4 510 66.9
AT1G51310 Arabidopsis thaliana HOM05D002268 ORTHO05D006937 8.6e-186 654.1 452 71.0
Sp1g37990 Schrenkiella parvula HOM05D002268 ORTHO05D006937 8.6e-186 654.1 410 75.6
AL1G59110 Arabidopsis lyrata HOM05D002268 ORTHO05D006937 2.5e-185 652.5 453 71.1
HanXRQChr07g0197481 Helianthus annuus HOM05D002268 ORTHO05D006937 7.3e-185 651.0 415 74.2
Lsat_1_v5_gn_2_97721 Lactuca sativa HOM05D002268 ORTHO05D006937 9.6e-185 650.6 495 65.7
Oeu043297.4 Olea europaea HOM05D002268 ORTHO05D006937 8.1e-184 647.5 488 67.4
Sabra16G0158600 Salix brachista HOM05D002268 ORTHO05D006937 9.0e-183 644.0 486 67.9
Actinidia06337 Actinidia chinensis HOM05D002268 ORTHO05D006937 3.4e-182 642.1 472 70.1
ECA238G2081 Erigeron canadensis HOM05D002268 ORTHO05D006937 4.4e-182 641.7 480 65.4
BraA08t32327Z Brassica rapa HOM05D002268 ORTHO05D006937 7.6e-182 641.0 442 71.3
Migut.N02313 Erythranthe guttata HOM05D002268 ORTHO05D006937 1.3e-181 640.2 488 67.2
PSO339G2995 Papaver somniferum HOM05D002268 ORTHO05D006937 1.1e-180 637.1 460 69.6
A08p02940 Brassica napus HOM05D002268 ORTHO05D006937 1.9e-180 636.3 480 67.1
PSO384G3396 Papaver somniferum HOM05D002268 ORTHO05D006937 1.9e-180 636.3 463 68.9
BcaC01g01260 Brassica carinata HOM05D002268 ORTHO05D006937 3.2e-180 635.6 410 74.1
C03p89920 Brassica napus HOM05D002268 ORTHO05D006937 4.2e-180 635.2 410 74.1
BolC3t21311H Brassica oleracea HOM05D002268 ORTHO05D006937 4.2e-180 635.2 410 74.1
FAN08G3580 Fragaria x ananassa HOM05D002268 ORTHO05D006937 1.2e-179 633.6 337 100.0
SalBow5G0100 Salvia bowleyana HOM05D002268 ORTHO05D006937 1.2e-179 633.6 486 65.6
HPP92_009580 Vanilla planifolia HOM05D002268 ORTHO05D006937 6.6e-178 627.9 462 65.8
Manes.06G165000 Manihot esculenta HOM05D002268 ORTHO05D006937 2.5e-177 625.9 425 72.7
TPR.G35035 Trifolium pratense HOM05D002268 ORTHO05D006937 1.3e-176 623.6 469 66.1
AUR62000114 Chenopodium quinoa HOM05D002268 ORTHO05D006937 6.9e-175 617.8 442 69.2
A05p19700 Brassica napus HOM05D002268 ORTHO05D006937 3.8e-173 612.1 428 70.3
ATR0605G089 Amborella trichopoda HOM05D002268 ORTHO05D006937 2.7e-171 605.9 395 72.2
CSS0013347 Camellia sinensis var. sinensis HOM05D002268 ORTHO05D006937 1.8e-167 593.2 365 76.7
Zm00001eb005670 Zea mays HOM05D002268 ORTHO05D006937 5.3e-167 591.7 464 62.5
SGA_v2.0_scaffold42G16104 Striga asiatica HOM05D002268 ORTHO05D006937 9.0e-167 590.9 490 60.6
Os03g0174600 Oryza sativa ssp. japonica HOM05D002268 ORTHO05D006937 1.7e-165 586.6 440 64.8
CDE04G2511 Ceratophyllum demersum HOM05D002268 ORTHO05D006937 3.1e-159 565.8 464 61.6
BcaC05g27353 Brassica carinata HOM05D002268 ORTHO05D006937 9.0e-159 564.3 362 72.9
Hund22033 Selenicereus undatus HOM05D002268 ORTHO05D006937 6.7e-154 548.1 622 51.8
BolC5t32017H Brassica oleracea HOM05D002268 ORTHO05D006937 2.2e-152 543.1 498 58.4
FAN04G1610 Fragaria x ananassa HOM05D002268 ORTHO05D006937 5.3e-151 538.5 340 80.9
Thecc.09G232700 Theobroma cacao HOM05D002268 ORTHO05D006937 5.9e-150 535.0 372 71.0
Lsat_1_v5_gn_2_132680 Lactuca sativa HOM05D002268 ORTHO05D006937 1.0e-146 524.2 405 64.4
C05p32860 Brassica napus HOM05D002268 ORTHO05D006937 7.7e-142 508.1 477 57.2
CSS0030827 Camellia sinensis var. sinensis HOM05D002268 ORTHO05D006937 3.2e-140 502.7 437 59.7
Ciclev10006706m.g Citrus clementina HOM05D002268 ORTHO05D006937 6.9e-135 485.0 489 57.1
Mapoly0129s0019 Marchantia polymorpha HOM05D002268 ORTHO05D006937 2.4e-127 459.9 396 57.1
SEGI_13867 Sequoiadendron giganteum HOM05D002268 ORTHO05D006937 2.4e-127 459.9 351 62.4
Pp3c15_1840 Physcomitrium patens HOM05D002268 ORTHO05D006937 3.5e-126 456.1 376 60.4
AagrBONN_evm.TU.Sc2ySwM_340.361 Anthoceros agrestis HOM05D002268 ORTHO05D006937 8.5e-125 451.4 407 56.0
SMO331G0070 Selaginella moellendorffii HOM05D002268 ORTHO05D006937 4.7e-123 445.7 380 57.4
Hma1.2p1_0861F.1_g229710 Hydrangea macrophylla HOM05D002268 ORTHO05D006937 1.0e-122 444.5 274 77.0
Dinv22182 Davidia involucrata HOM05D002268 ORTHO05D006937 8.8e-122 441.4 260 79.2
Glyma.12G057700 Glycine max HOM05D002268 ORTHO05D006937 2.0e-113 413.7 304 67.4
TAR369G0718 Trochodendron aralioides HOM05D002268 ORTHO05D006937 2.9e-109 399.8 261 73.2
PRCOL_00001138 Prasinoderma coloniale HOM05D002268 ORTHO05D006937 1.2e-105 387.9 383 52.7
MCO02G416 Micromonas commoda HOM05D002268 ORTHO05D006937 3.4e-105 386.3 437 47.8
Peaxi162Scf00004g00224 Petunia axillaris HOM05D002268 ORTHO05D006937 5.9e-102 375.6 251 71.3
Actinidia26439 Actinidia chinensis HOM05D002268 ORTHO05D006937 9.5e-100 368.2 213 81.7
AagrBONN_evm.TU.Sc2ySwM_368.606 Anthoceros agrestis HOM05D002268 ORTHO05D006937 3.0e-93 346.7 369 49.6
Cre14.g628000 Chlamydomonas reinhardtii HOM05D002268 ORTHO05D006937 1.2e-89 334.7 527 38.7
Gohir.A05G069100 Gossypium hirsutum HOM05D002268 ORTHO05D006937 1.2e-86 324.7 283 66.8
CBR_g40742 Chara braunii HOM05D002268 ORTHO05D006937 6.2e-83 312.4 418 43.5
unitig_21.g20901 Utricularia gibba HOM05D002268 ORTHO05D006937 8.6e-77 292.0 219 68.0
unitig_21.g20902 Utricularia gibba HOM05D002268 ORTHO05D007950 7.1e-71 272.3 190 69.5
BcaB04g17220 Brassica carinata HOM05D002268 ORTHO05D006937 7.3e-68 262.3 175 72.0
MSTRG.17590 Avicennia marina HOM05D002268 ORTHO05D006937 1.2e-54 218.4 162 67.9
Hma1.2p1_0861F.1_g229720 Hydrangea macrophylla HOM05D002268 ORTHO05D006937 1.6e-54 218.0 140 75.0
BcaC01g01262 Brassica carinata HOM05D002268 ORTHO05D006937 1.8e-50 204.5 289 43.3
C03p89950 Brassica napus HOM05D002268 ORTHO05D001336 1.2e-49 201.8 180 58.9
BolC3t21314H Brassica oleracea HOM05D002268 ORTHO05D006937 3.9e-45 186.8 180 56.1
CBR_g19922 Chara braunii HOM05D002268 ORTHO05D021278 2.8e-43 180.6 307 33.9
CSS0037797 Camellia sinensis var. sinensis HOM05D002268 ORTHO05D006937 5.3e-42 176.4 97 79.4
AagrBONN_evm.TU.Sc2ySwM_117.3752 Anthoceros agrestis HOM05D002268 ORTHO05D021278 7.6e-41 172.6 327 33.0
Pp3c4_6690 Physcomitrium patens HOM05D002268 ORTHO05D021278 6.7e-37 159.5 417 28.1
BraA05t20874Z Brassica rapa HOM05D002268 ORTHO05D006937 2.5e-36 157.5 159 56.6
Mapoly0010s0199 Marchantia polymorpha HOM05D002268 ORTHO05D021278 7.4e-36 156.0 383 30.0
SEGI_07269 Sequoiadendron giganteum HOM05D002268 ORTHO05D006937 2.0e-33 147.9 97 71.1
MCO12G105 Micromonas commoda HOM05D002268 ORTHO05D021278 7.7e-33 146.0 349 31.2
PRCOL_00001597 Prasinoderma coloniale HOM05D002268 ORTHO05D021278 7.7e-33 146.0 399 27.6
Lsat_1_v5_gn_1_117501 Lactuca sativa HOM05D002268 ORTHO05D006937 2.2e-32 144.4 74 82.4
Nn3g21873 Nelumbo nucifera HOM05D002268 ORTHO05D006937 1.9e-23 114.8 92 64.1
SEGI_39418 Sequoiadendron giganteum HOM05D002268 ORTHO05D006937 1.6e-22 111.7 108 50.0
C03p89940 Brassica napus HOM05D002268 ORTHO05D040778 2.9e-16 90.9 115 46.1
A08p02920 Brassica napus HOM05D002268 ORTHO05D099342 1.4e-15 88.6 99 52.5
Duzib150G1137 Durio zibethinus HOM05D002268 ORTHO05D006937 9.4e-15 85.9 99 57.6
BolC3t21313H Brassica oleracea HOM05D002268 ORTHO05D040778 1.0e-13 82.4 111 44.1
MELO3C029180.2 Cucumis melo HOM05D002268 ORTHO05D168145 1.6e-09 68.6 260 26.2
QL06p040831 Quercus lobata HOM05D002268 ORTHO05D006937 2.2e-08 64.7 31 87.1
Actinidia23968 Actinidia chinensis HOM05D002268 ORTHO05D006937 3.8e-08 63.9 50 72.0
C01p11650 Brassica napus HOM05D026831 ORTHO05D011195 3.6e-06 57.4 94 39.4
BolC2t12207H Brassica oleracea HOM05D002268 ORTHO05D042165 3.6e-06 57.4 94 39.4
C02p10780 Brassica napus HOM05D002268 ORTHO05D042165 4.7e-06 57.0 94 38.3


User provided reference genes

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