Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g31130 Fragaria vesca HOM05D003673 ORTHO05D004764 8.4e-54 213.4 105 100.0
FAN18G0200 Fragaria x ananassa HOM05D003673 ORTHO05D004764 1.6e-52 209.1 105 97.1
FvH4_6g38670 Fragaria vesca HOM05D003673 ORTHO05D004764 4.3e-42 174.5 88 94.3
FAN02G0649 Fragaria x ananassa HOM05D003673 ORTHO05D004764 4.3e-42 174.5 88 94.3
FAN14G2563 Fragaria x ananassa HOM05D003673 ORTHO05D004764 4.3e-42 174.5 88 94.3
FAN09G3261 Fragaria x ananassa HOM05D003673 ORTHO05D004764 9.7e-42 173.3 88 93.2
FAN05G2105 Fragaria x ananassa HOM05D003673 ORTHO05D004764 1.3e-41 172.9 88 93.2
RcHm_v2.0_Chr2g0152141 Rosa chinensis HOM05D003673 ORTHO05D004764 3.7e-41 171.4 88 92.0
RcHm_v2.0_Chr2g0152131 Rosa chinensis HOM05D003673 ORTHO05D004764 6.3e-41 170.6 89 89.9
HanXRQChr14g0451901 Helianthus annuus HOM05D003673 ORTHO05D004764 1.1e-40 169.9 89 88.8
Aqoxy1G01891 Aquilegia oxysepala HOM05D003673 ORTHO05D004764 1.4e-40 169.5 89 88.8
Lj8C8T1 Lonicera japonica HOM05D003673 ORTHO05D004764 2.4e-40 168.7 89 88.8
Prupe.3G177700 Prunus persica HOM05D003673 ORTHO05D004764 3.1e-40 168.3 89 88.8
Sed0005423 Sechium edule HOM05D003673 ORTHO05D004764 4.1e-40 167.9 89 87.6
arahy.Tifrunner.gnm1.ann1.I7WXBP Arachis hypogaea HOM05D003673 ORTHO05D004764 6.9e-40 167.2 89 88.8
Ciclev10031587m.g Citrus clementina HOM05D003673 ORTHO05D004764 6.9e-40 167.2 89 86.5
arahy.Tifrunner.gnm1.ann1.FDUH0H Arachis hypogaea HOM05D003673 ORTHO05D004764 9.1e-40 166.8 89 87.6
CARHR006180 Cardamine hirsuta HOM05D003673 ORTHO05D004764 9.1e-40 166.8 89 86.5
QL08p044989 Quercus lobata HOM05D003673 ORTHO05D004764 9.1e-40 166.8 88 87.5
Sc19g0001760 Simmondsia chinensis HOM05D003673 ORTHO05D004764 9.1e-40 166.8 89 87.6
CSS0042622 Camellia sinensis var. sinensis HOM05D003673 ORTHO05D004764 1.2e-39 166.4 89 87.6
CiPaw.03G191900 Carya illinoinensis HOM05D003673 ORTHO05D004764 1.2e-39 166.4 89 86.5
PGR042G2748 Punica granatum HOM05D003673 ORTHO05D004764 1.2e-39 166.4 88 87.5
Cpa.g.sc50.111 Carica papaya HOM05D003673 ORTHO05D004764 1.5e-39 166.0 89 86.5
Cfa023358 Carpinus fangiana HOM05D003673 ORTHO05D004764 1.5e-39 166.0 89 86.5
ClCG11G016540 Citrullus lanatus HOM05D003673 ORTHO05D004764 1.5e-39 166.0 89 85.4
PGSC0003DMG400017420 Solanum tuberosum HOM05D003673 ORTHO05D004764 1.5e-39 166.0 88 87.5
Sabra02G0046800 Salix brachista HOM05D003673 ORTHO05D004764 2.6e-39 165.2 89 86.5
AL1G16600 Arabidopsis lyrata HOM05D003673 ORTHO05D004764 3.4e-39 164.9 89 86.5
Haze_13556 Corylus avellana HOM05D003673 ORTHO05D004764 3.4e-39 164.9 89 85.4
MD17G1134800 Malus domestica HOM05D003673 ORTHO05D004764 3.4e-39 164.9 89 86.5
Oeu051389.1 Olea europaea HOM05D003673 ORTHO05D004764 3.4e-39 164.9 88 86.4
BraA09t42028Z Brassica rapa HOM05D003673 ORTHO05D004764 4.5e-39 164.5 89 84.3
Carub.0001s0594 Capsella rubella HOM05D003673 ORTHO05D004764 4.5e-39 164.5 89 85.4
Dinv07089 Davidia involucrata HOM05D003673 ORTHO05D004764 4.5e-39 164.5 89 85.4
Sp1g05330 Schrenkiella parvula HOM05D003673 ORTHO05D004764 4.5e-39 164.5 89 85.4
A09p66930 Brassica napus HOM05D003673 ORTHO05D004764 5.9e-39 164.1 89 84.3
Dinv07706 Davidia involucrata HOM05D003673 ORTHO05D004764 5.9e-39 164.1 89 85.4
Solyc07g045050.3 Solanum lycopersicum HOM05D003673 ORTHO05D004764 5.9e-39 164.1 88 86.4
Sopen07g023610 Solanum pennellii HOM05D003673 ORTHO05D004764 5.9e-39 164.1 88 86.4
AT1G06570 Arabidopsis thaliana HOM05D003673 ORTHO05D004764 7.7e-39 163.7 89 85.4
COL.COLO4_38400 Corchorus olitorius HOM05D003673 ORTHO05D004764 7.7e-39 163.7 89 85.4
Nn7g37943 Nelumbo nucifera HOM05D003673 ORTHO05D004764 7.7e-39 163.7 89 85.4
Peaxi162Scf00416g00004 Petunia axillaris HOM05D003673 ORTHO05D004764 7.7e-39 163.7 88 86.4
PGSC0003DMG400017707 Solanum tuberosum HOM05D003673 ORTHO05D004764 7.7e-39 163.7 88 86.4
Aa31LG1G7910 Aethionema arabicum HOM05D003673 ORTHO05D004764 1.0e-38 163.3 89 84.3
MELO3C022961.2 Cucumis melo HOM05D003673 ORTHO05D004764 1.0e-38 163.3 89 84.3
CsaV3_4G032000 Cucumis sativus L. HOM05D003673 ORTHO05D004764 1.0e-38 163.3 89 84.3
DCAR_023045 Daucus carota HOM05D003673 ORTHO05D004764 1.0e-38 163.3 89 85.4
ECA238G4715 Erigeron canadensis HOM05D003673 ORTHO05D004764 1.0e-38 163.3 88 86.4
Thhalv10007634m.g Eutrema salsugineum HOM05D003673 ORTHO05D004764 1.0e-38 163.3 89 84.3
Migut.M00071 Erythranthe guttata HOM05D003673 ORTHO05D004764 1.3e-38 162.9 88 86.4
Thecc.01G168600 Theobroma cacao HOM05D003673 ORTHO05D004764 1.3e-38 162.9 89 85.4
C08p51160 Brassica napus HOM05D003673 ORTHO05D004764 1.7e-38 162.5 89 83.1
BolC8t52642H Brassica oleracea HOM05D003673 ORTHO05D004764 1.7e-38 162.5 89 83.1
Gohir.A07G080400 Gossypium hirsutum HOM05D003673 ORTHO05D004764 1.7e-38 162.5 89 84.3
Gohir.D07G086000 Gossypium hirsutum HOM05D003673 ORTHO05D004764 1.7e-38 162.5 89 84.3
Gorai.001G092000 Gossypium raimondii HOM05D003673 ORTHO05D004764 1.7e-38 162.5 89 84.3
Potri.002G057400 Populus trichocarpa HOM05D003673 ORTHO05D004764 1.7e-38 162.5 88 85.2
BcaNung07075 Brassica carinata HOM05D003673 ORTHO05D004764 2.2e-38 162.2 88 84.1
C05p04810 Brassica napus HOM05D003673 ORTHO05D004764 2.2e-38 162.2 88 84.1
BolC5t29254H Brassica oleracea HOM05D003673 ORTHO05D004764 2.2e-38 162.2 88 84.1
Ca_06264_v3 Cicer arietinum L. HOM05D003673 ORTHO05D004764 2.2e-38 162.2 88 85.2
Ca_30265_v3 Cicer arietinum L. HOM05D003673 ORTHO05D004764 2.2e-38 162.2 88 85.2
Eucgr.A02022 Eucalyptus grandis HOM05D003673 ORTHO05D004764 2.2e-38 162.2 88 85.2
Lsat_1_v5_gn_2_96721 Lactuca sativa HOM05D003673 ORTHO05D004764 2.2e-38 162.2 89 83.1
Manes.02G088900 Manihot esculenta HOM05D003673 ORTHO05D004764 2.9e-38 161.8 88 85.2
BcaB02g06780 Brassica carinata HOM05D003673 ORTHO05D004764 3.8e-38 161.4 88 84.1
A10p05210 Brassica napus HOM05D003673 ORTHO05D004764 3.8e-38 161.4 88 84.1
BraA10t42788Z Brassica rapa HOM05D003673 ORTHO05D004764 3.8e-38 161.4 88 84.1
vmacro04781 Vaccinium macrocarpon HOM05D003673 ORTHO05D004764 3.8e-38 161.4 89 84.3
Atru.chr6.2046 Acer truncatum HOM05D003673 ORTHO05D004764 5.0e-38 161.0 89 83.1
CAN.G7.15 Capsicum annuum HOM05D003673 ORTHO05D004764 6.5e-38 160.6 88 83.0
MBI18_g13605_MAGBIO Magnolia biondii HOM05D003673 ORTHO05D004764 6.5e-38 160.6 89 80.9
Rhsim07G0197900 Rhododendron simsii HOM05D003673 ORTHO05D004764 6.5e-38 160.6 89 84.3
SGA_v2.0_scaffold73G24479 Striga asiatica HOM05D003673 ORTHO05D004764 6.5e-38 160.6 87 85.1
BcaC07g42060 Brassica carinata HOM05D003673 ORTHO05D004764 8.5e-38 160.2 89 80.9
Nitab4.5_0000006g0440 Nicotiana tabacum HOM05D003673 ORTHO05D004764 8.5e-38 160.2 88 84.1
Nitab4.5_0002201g0040 Nicotiana tabacum HOM05D003673 ORTHO05D004764 8.5e-38 160.2 88 84.1
TPR.G10168 Trifolium pratense HOM05D003673 ORTHO05D004764 8.5e-38 160.2 88 84.1
TAR626G0427 Trochodendron aralioides HOM05D003673 ORTHO05D004764 8.5e-38 160.2 89 84.3
Ah.01g013590 Amaranthus hybridus HOM05D003673 ORTHO05D004764 1.1e-37 159.8 89 83.1
Medtr5g091060 Medicago truncatula HOM05D003673 ORTHO05D004764 1.4e-37 159.5 88 84.1
LjContig00049g0013493 Lotus japonicus HOM05D003673 ORTHO05D004764 2.5e-37 158.7 88 81.8
Psat2g017880 Pisum sativum HOM05D003673 ORTHO05D004764 2.5e-37 158.7 88 81.8
AUR62015128 Chenopodium quinoa HOM05D003673 ORTHO05D004764 3.2e-37 158.3 88 81.8
Sopen05g024810 Solanum pennellii HOM05D003673 ORTHO05D004764 3.2e-37 158.3 88 83.0
TWI59G0698 Tripterygium wilfordii HOM05D003673 ORTHO05D004764 3.2e-37 158.3 89 83.1
EL10Ac9g22832 Beta vulgaris HOM05D003673 ORTHO05D004764 4.2e-37 157.9 88 83.0
Lalb_Chr04g0248921 Lupinus albus HOM05D003673 ORTHO05D004764 7.2e-37 157.1 88 81.8
AUR62017589 Chenopodium quinoa HOM05D003673 ORTHO05D004764 9.4e-37 156.8 88 80.7
SalBow1G2057 Salvia bowleyana HOM05D003673 ORTHO05D004764 1.2e-36 156.4 87 82.8
SalBow7G3717 Salvia bowleyana HOM05D004564 ORTHO05D006106 1.2e-36 156.4 87 82.8
THA.LOC104815838 Tarenaya hassleriana HOM05D003673 ORTHO05D004764 1.2e-36 156.4 88 80.7
PSO675G0095 Papaver somniferum HOM05D003673 ORTHO05D004764 2.1e-36 155.6 89 83.1
CANSAT64G2396 Cannabis sativa HOM05D003673 ORTHO05D004764 3.6e-36 154.8 88 79.5
Aqoxy1G01890 Aquilegia oxysepala HOM05D003673 ORTHO05D004764 4.7e-36 154.5 89 80.9
MSTRG.14903 Avicennia marina HOM05D003673 ORTHO05D004764 4.7e-36 154.5 88 79.5
PSO675G5654 Papaver somniferum HOM05D003673 ORTHO05D004764 7.9e-36 153.7 89 80.9
Medtr5g090990 Medicago truncatula HOM05D003673 ORTHO05D004764 1.8e-35 152.5 88 80.7
TPR.G25540 Trifolium pratense HOM05D003673 ORTHO05D004764 1.8e-35 152.5 88 79.5
EL10Ac9g22831 Beta vulgaris HOM05D003673 ORTHO05D004764 3.9e-35 151.4 88 79.5
CANSAT64G0060 Cannabis sativa HOM05D003673 ORTHO05D004764 3.9e-35 151.4 88 77.3
Eucgr.A02024 Eucalyptus grandis HOM05D003673 ORTHO05D004764 5.1e-35 151.0 89 76.4
Phvul.008G194300 Phaseolus vulgaris HOM05D003673 ORTHO05D004764 1.5e-34 149.4 88 79.5
VMungo0647G2026 Vigna mungo HOM05D003673 ORTHO05D004764 1.5e-34 149.4 88 78.4
CDE05G0951 Ceratophyllum demersum HOM05D003673 ORTHO05D004764 3.3e-34 148.3 88 78.4
Hund22282 Selenicereus undatus HOM05D003673 ORTHO05D004764 4.4e-34 147.9 88 75.0
Medtr1g022325 Medicago truncatula HOM05D003673 ORTHO05D004764 7.4e-34 147.1 88 77.3
Hma1.2p1_0033F.1_g021200 Hydrangea macrophylla HOM05D003673 ORTHO05D004764 1.3e-33 146.4 88 77.3
HPP92_002268 Vanilla planifolia HOM05D003673 ORTHO05D004764 1.7e-33 146.0 88 75.0
Glyma.14G030400 Glycine max HOM05D003673 ORTHO05D004764 2.2e-33 145.6 88 77.3
Mapoly0126s0038 Marchantia polymorpha HOM05D003673 ORTHO05D004764 2.2e-33 145.6 89 71.9
SEGI_30126 Sequoiadendron giganteum HOM05D003673 ORTHO05D004764 2.8e-33 145.2 89 76.4
Eucgr.A02023 Eucalyptus grandis HOM05D003673 ORTHO05D004764 6.3e-33 144.1 88 75.0
CANSAT64G0777 Cannabis sativa HOM05D003673 ORTHO05D004764 1.8e-32 142.5 88 71.6
Pp3c1_27020 Physcomitrium patens HOM05D003673 ORTHO05D004764 3.1e-32 141.7 89 71.9
ECA233G6193 Erigeron canadensis HOM05D003673 ORTHO05D004764 4.1e-32 141.4 89 71.9
AagrBONN_evm.TU.Sc2ySwM_368.1457 Anthoceros agrestis HOM05D003673 ORTHO05D004764 7.0e-32 140.6 88 72.7
Pp3c2_15470 Physcomitrium patens HOM05D003673 ORTHO05D004764 7.0e-32 140.6 89 70.8
COL.COLO4_38402 Corchorus olitorius HOM05D003673 ORTHO05D004764 9.1e-32 140.2 89 71.9
unitig_899.g15456 Utricularia gibba HOM05D003673 ORTHO05D004764 4.5e-31 137.9 88 75.0
MD13G1156600 Malus domestica HOM05D003673 ORTHO05D004764 5.9e-31 137.5 89 73.0
AagrBONN_evm.TU.Sc2ySwM_368.1545 Anthoceros agrestis HOM05D003673 ORTHO05D004764 7.7e-31 137.1 88 71.6
MD05G1024200 Malus domestica HOM05D003673 ORTHO05D004764 1.0e-30 136.7 76 80.3
Glyma.02G284600 Glycine max HOM05D003673 ORTHO05D004764 1.3e-30 136.3 84 76.2
Lsat_1_v5_gn_6_42781 Lactuca sativa HOM05D003673 ORTHO05D004764 2.9e-30 135.2 88 69.3
ATR0763G164 Amborella trichopoda HOM05D003673 ORTHO05D004764 7.2e-29 130.6 88 68.2
PSO170G5322 Papaver somniferum HOM05D003673 ORTHO05D004764 7.2e-29 130.6 89 73.0
Os02g0168100 Oryza sativa ssp. japonica HOM05D003673 ORTHO05D004764 9.4e-29 130.2 88 63.6
Potri.005G205200 Populus trichocarpa HOM05D003673 ORTHO05D004764 3.6e-28 128.3 78 76.9
PSO210G5105 Papaver somniferum HOM05D003673 ORTHO05D004764 5.2e-27 124.4 89 68.5
PSO210G6115 Papaver somniferum HOM05D003673 ORTHO05D004764 6.7e-27 124.0 89 69.7
PSO144G0168 Papaver somniferum HOM05D003673 ORTHO05D004764 8.8e-27 123.6 89 66.3
SMO358G0369 Selaginella moellendorffii HOM05D003673 ORTHO05D004764 8.8e-27 123.6 89 65.2
Zm00001eb232960 Zea mays HOM05D003673 ORTHO05D004764 1.5e-26 122.9 88 60.2
PSO210G1881 Papaver somniferum HOM05D003673 ORTHO05D004764 2.0e-26 122.5 89 66.3
HanXRQChr02g0055101 Helianthus annuus HOM05D003673 ORTHO05D004764 2.8e-25 118.6 88 64.8
CBR_g8495 Chara braunii HOM05D003673 ORTHO05D004764 6.3e-25 117.5 89 59.6
Zm00001eb304950 Zea mays HOM05D003673 ORTHO05D004764 8.2e-25 117.1 88 58.0
CBR_g41741 Chara braunii HOM05D003673 ORTHO05D004764 1.2e-23 113.2 88 56.8
CBR_g46667 Chara braunii HOM05D003673 ORTHO05D004764 1.2e-23 113.2 88 56.8
Cre09.g399030 Chlamydomonas reinhardtii HOM05D003673 ORTHO05D004764 7.7e-23 110.5 88 59.1
Cre09.g398993 Chlamydomonas reinhardtii HOM05D003673 ORTHO05D004764 1.7e-22 109.4 88 56.8
PRCOL_00001771 Prasinoderma coloniale HOM05D003673 ORTHO05D004764 2.9e-22 108.6 89 58.4
SMO118G0557 Selaginella moellendorffii HOM05D003673 ORTHO05D004764 2.5e-21 105.5 88 52.3
MCO11G070 Micromonas commoda HOM05D003673 ORTHO05D004764 6.1e-20 100.9 90 57.8
Solyc05g041200.4 Solanum lycopersicum HOM05D003673 ORTHO05D004764 1.4e-19 99.8 54 87.0
Ah.02g114000 Amaranthus hybridus HOM05D003673 ORTHO05D004764 8.8e-19 97.1 87 50.6
Medtr5g090980 Medicago truncatula HOM05D003673 ORTHO05D004764 2.0e-18 95.9 62 66.1
CDE02G2922 Ceratophyllum demersum HOM05D003673 ORTHO05D004764 7.5e-18 94.0 118 50.0
AUR62035118 Chenopodium quinoa HOM05D003673 ORTHO05D004764 8.3e-17 90.5 87 50.6
AUR62039293 Chenopodium quinoa HOM05D003673 ORTHO05D004764 8.3e-17 90.5 87 50.6
AUR62039297 Chenopodium quinoa HOM05D003673 ORTHO05D004764 8.3e-17 90.5 87 50.6
AUR62039301 Chenopodium quinoa HOM05D003673 ORTHO05D004764 8.3e-17 90.5 87 50.6
AUR62044533 Chenopodium quinoa HOM05D003673 ORTHO05D004764 8.3e-17 90.5 87 50.6
MD09G1148400 Malus domestica HOM05D003673 ORTHO05D004764 3.5e-15 85.1 104 50.0
COL.COLO4_20758 Corchorus olitorius HOM05D003673 ORTHO05D004764 1.1e-13 80.1 53 66.0
arahy.Tifrunner.gnm1.ann1.KE2YGW Arachis hypogaea HOM05D003673 ORTHO05D004764 3.2e-13 78.6 94 51.1
Haze_25279 Corylus avellana HOM05D003673 ORTHO05D004764 2.7e-12 75.5 48 70.8
Thecc.01G169100 Theobroma cacao HOM05D003673 ORTHO05D004764 2.7e-12 75.5 47 74.5
COL.COLO4_19675 Corchorus olitorius HOM05D003673 ORTHO05D163473 4.7e-12 74.7 60 56.7
Actinidia24401 Actinidia chinensis HOM05D003673 ORTHO05D004764 4.4e-10 68.2 104 40.4
Thecc.01G168800 Theobroma cacao HOM05D003673 ORTHO05D004764 1.7e-09 66.2 68 50.0
arahy.Tifrunner.gnm1.ann1.3I6JIA Arachis hypogaea HOM05D003673 ORTHO05D004764 2.8e-09 65.5 35 85.7
Cc05_g01440 Coffea canephora HOM05D003673 ORTHO05D004764 1.8e-08 62.8 30 93.3
GSVIVG01020837001 Vitis vinifera HOM05D003673 ORTHO05D004764 5.4e-08 61.2 30 86.7


User provided reference genes

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