Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g30410 Fragaria vesca HOM05D002221 ORTHO05D002626 8.7e-63 243.4 120 100.0
FAN18G4113 Fragaria x ananassa HOM05D002221 ORTHO05D002626 3.9e-55 218.0 163 71.8
FAN28G0478 Fragaria x ananassa HOM05D002221 ORTHO05D002626 1.7e-21 106.3 122 50.8
QL08p028790 Quercus lobata HOM05D002221 ORTHO05D002626 8.8e-15 84.0 53 71.7
RcHm_v2.0_Chr2g0156811 Rosa chinensis HOM05D002221 ORTHO05D002626 2.6e-14 82.4 56 71.4
FAN01G0216 Fragaria x ananassa HOM05D002221 ORTHO05D002626 7.5e-14 80.9 53 73.6
MD09G1121200 Malus domestica HOM05D002221 ORTHO05D002626 9.8e-14 80.5 53 75.5
Prupe.3G202500 Prunus persica HOM05D002221 ORTHO05D002626 1.3e-13 80.1 58 69.0
MD17G1112200 Malus domestica HOM05D002221 ORTHO05D002626 6.3e-13 77.8 53 73.6
FvH4_6g41260 Fragaria vesca HOM05D002221 ORTHO05D002626 8.3e-13 77.4 53 73.6
FAN02G0611 Fragaria x ananassa HOM05D002221 ORTHO05D002626 8.3e-13 77.4 53 73.6
FAN05G3400 Fragaria x ananassa HOM05D002221 ORTHO05D002626 8.3e-13 77.4 53 73.6
FAN09G1924 Fragaria x ananassa HOM05D002221 ORTHO05D002626 8.3e-13 77.4 53 73.6
FAN10G1425 Fragaria x ananassa HOM05D002221 ORTHO05D002626 8.3e-13 77.4 93 49.5
FAN14G4958 Fragaria x ananassa HOM05D002221 ORTHO05D002626 8.3e-13 77.4 53 73.6
Cfa014250 Carpinus fangiana HOM05D002221 ORTHO05D002626 5.4e-12 74.7 55 69.1
MD11G1248000 Malus domestica HOM05D002221 ORTHO05D002626 7.7e-11 70.9 53 67.9
Haze_12699 Corylus avellana HOM05D002221 ORTHO05D002626 1.3e-10 70.1 55 65.5
arahy.Tifrunner.gnm1.ann1.Q8BPMD Arachis hypogaea HOM05D002221 ORTHO05D002626 2.3e-10 69.3 53 62.3
Actinidia09774 Actinidia chinensis HOM05D002221 ORTHO05D002626 8.6e-10 67.4 37 75.7
TWI75G1127 Tripterygium wilfordii HOM05D002221 ORTHO05D002626 8.6e-10 67.4 62 58.1
Actinidia07881 Actinidia chinensis HOM05D002221 ORTHO05D002626 2.5e-09 65.9 60 56.7
arahy.Tifrunner.gnm1.ann1.DY6AJ3 Arachis hypogaea HOM05D002221 ORTHO05D002626 2.5e-09 65.9 53 58.5
arahy.Tifrunner.gnm1.ann1.E5VA16 Arachis hypogaea HOM05D002221 ORTHO05D002626 2.5e-09 65.9 53 58.5
Dinv05840 Davidia involucrata HOM05D002221 ORTHO05D002626 3.3e-09 65.5 36 77.8
Lsat_1_v5_gn_7_96100 Lactuca sativa HOM05D002221 ORTHO05D002626 3.3e-09 65.5 36 75.0
Manes.12G062301 Manihot esculenta HOM05D002221 ORTHO05D002626 3.3e-09 65.5 41 68.3
Actinidia21448 Actinidia chinensis HOM05D002221 ORTHO05D002626 4.2e-09 65.1 60 55.0
FAN08G3616 Fragaria x ananassa HOM05D021744 ORTHO05D022613 4.2e-09 65.1 42 83.3
CSS0006770 Camellia sinensis var. sinensis HOM05D002221 ORTHO05D002626 5.5e-09 64.7 36 72.2
DCAR_021108 Daucus carota HOM05D002221 ORTHO05D002626 9.5e-09 63.9 36 72.2
MD06G1090400 Malus domestica HOM05D002221 ORTHO05D002626 9.5e-09 63.9 53 60.4
CSS0020136 Camellia sinensis var. sinensis HOM05D002221 ORTHO05D002626 1.6e-08 63.2 36 69.4
Manes.13G064000 Manihot esculenta HOM05D002221 ORTHO05D002626 1.6e-08 63.2 54 53.7
CSS0000293 Camellia sinensis var. sinensis HOM05D002221 ORTHO05D002626 2.8e-08 62.4 36 69.4
HanXRQChr11g0328161 Helianthus annuus HOM05D002221 ORTHO05D002626 2.8e-08 62.4 36 72.2
CsaV3_6G009390 Cucumis sativus L. HOM05D002221 ORTHO05D002626 3.6e-08 62.0 61 52.5
Glyma.15G116000 Glycine max HOM05D002221 ORTHO05D002626 3.6e-08 62.0 42 61.9
HanXRQChr08g0207961 Helianthus annuus HOM05D002221 ORTHO05D002626 4.7e-08 61.6 36 72.2
CANSAT64G0524 Cannabis sativa HOM05D002221 ORTHO05D002626 6.1e-08 61.2 52 55.8
MELO3C025541.2 Cucumis melo HOM05D002221 ORTHO05D002626 8.0e-08 60.8 36 66.7
CSS0005625 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D010139 1.0e-07 60.5 38 65.8
CSS0021685 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D010139 1.0e-07 60.5 38 65.8
Glyma.09G011500 Glycine max HOM05D002221 ORTHO05D002626 1.0e-07 60.5 42 59.5
Sabra14G0123100 Salix brachista HOM05D002221 ORTHO05D002626 1.0e-07 60.5 54 51.9
Actinidia02303 Actinidia chinensis HOM05D002221 ORTHO05D002626 1.4e-07 60.1 43 55.8
CSS0003824 Camellia sinensis var. sinensis HOM05D002221 ORTHO05D002626 1.4e-07 60.1 61 54.1
CDE04G0937 Ceratophyllum demersum HOM05D002221 ORTHO05D002626 1.4e-07 60.1 34 73.5
CDE07G1288 Ceratophyllum demersum HOM05D002221 ORTHO05D002626 1.4e-07 60.1 35 68.6
Ciclev10016471m.g Citrus clementina HOM05D002221 ORTHO05D002626 1.4e-07 60.1 35 71.4
Dinv07854 Davidia involucrata HOM05D002221 ORTHO05D002626 1.4e-07 60.1 34 73.5
ClCG02G009420 Citrullus lanatus HOM05D002221 ORTHO05D002626 1.8e-07 59.7 35 74.3
Potri.002G222300 Populus trichocarpa HOM05D002221 ORTHO05D002626 1.8e-07 59.7 37 67.6
Ca_16366_v3 Cicer arietinum L. HOM05D002221 ORTHO05D002626 2.3e-07 59.3 41 63.4
ClCG01G010620 Citrullus lanatus HOM05D002221 ORTHO05D002626 2.3e-07 59.3 36 63.9
Nn1g02978 Nelumbo nucifera HOM05D002221 ORTHO05D002626 2.3e-07 59.3 36 66.7
Rhsim04G0039300 Rhododendron simsii HOM05D002221 ORTHO05D002626 2.3e-07 59.3 52 51.9
Sed0016031 Sechium edule HOM05D002221 ORTHO05D002626 2.3e-07 59.3 36 66.7
CsaV3_1G017040 Cucumis sativus L. HOM05D002221 ORTHO05D002626 3.0e-07 58.9 36 63.9
CsaV3_UNG053440 Cucumis sativus L. HOM05D002221 ORTHO05D002626 3.0e-07 58.9 36 63.9
Gorai.007G167400 Gossypium raimondii HOM05D002221 ORTHO05D002626 3.0e-07 58.9 59 57.6
Lj6g0003849 Lotus japonicus HOM05D002221 ORTHO05D002626 3.0e-07 58.9 47 48.9
Nitab4.5_0001587g0110 Nicotiana tabacum HOM05D002221 ORTHO05D002626 3.0e-07 58.9 52 51.9
Nitab4.5_0007133g0030 Nicotiana tabacum HOM05D002221 ORTHO05D002626 3.0e-07 58.9 52 50.0
Sed0010569 Sechium edule HOM05D002221 ORTHO05D002626 3.0e-07 58.9 35 74.3
vmacro03629 Vaccinium macrocarpon HOM05D002221 ORTHO05D010139 3.0e-07 58.9 42 57.1
Ca_00740_v3 Cicer arietinum L. HOM05D002221 ORTHO05D002626 4.0e-07 58.5 48 54.2
Gohir.A11G150400 Gossypium hirsutum HOM05D002221 ORTHO05D002626 4.0e-07 58.5 59 54.2
Lsat_1_v5_gn_0_32461 Lactuca sativa HOM05D002221 ORTHO05D009499 4.0e-07 58.5 49 55.1
Lalb_Chr20g0119361 Lupinus albus HOM05D002221 ORTHO05D002626 4.0e-07 58.5 61 44.3
PGR042G3580 Punica granatum HOM05D002221 ORTHO05D002626 4.0e-07 58.5 34 70.6
VMungo0540G2162 Vigna mungo HOM05D002221 ORTHO05D002626 4.0e-07 58.5 36 72.2
EL10Ac9g22740 Beta vulgaris HOM05D002221 ORTHO05D002626 5.2e-07 58.2 34 70.6
Sed0012115 Sechium edule HOM05D002221 ORTHO05D002626 5.2e-07 58.2 35 68.6
TAR626G0475 Trochodendron aralioides HOM05D002221 ORTHO05D002626 5.2e-07 58.2 35 68.6
TAR629G1692 Trochodendron aralioides HOM05D002221 ORTHO05D002626 5.2e-07 58.2 47 53.2
vmacro12109 Vaccinium macrocarpon HOM05D002221 ORTHO05D002626 5.2e-07 58.2 58 53.4
ECA236G1538 Erigeron canadensis HOM05D002221 ORTHO05D002626 6.8e-07 57.8 34 70.6
MBI16_g11549_MAGBIO Magnolia biondii HOM05D002221 ORTHO05D010139 6.8e-07 57.8 35 65.7
Nitab4.5_0001229g0150 Nicotiana tabacum HOM05D002221 ORTHO05D002626 6.8e-07 57.8 57 54.4
Peaxi162Scf00004g02331 Petunia axillaris HOM05D002221 ORTHO05D002626 6.8e-07 57.8 36 63.9
Solyc11g065760.2 Solanum lycopersicum HOM05D002221 ORTHO05D002626 6.8e-07 57.8 37 62.2
Sopen11g025530 Solanum pennellii HOM05D002221 ORTHO05D002626 6.8e-07 57.8 37 62.2
THA.LOC104826660 Tarenaya hassleriana HOM05D002221 ORTHO05D002626 6.8e-07 57.8 64 48.4
Thecc.06G235900 Theobroma cacao HOM05D002221 ORTHO05D002626 6.8e-07 57.8 42 57.1
MELO3C025990.2 Cucumis melo HOM05D002221 ORTHO05D002626 8.9e-07 57.4 35 71.4
Duzib138G0880 Durio zibethinus HOM05D002221 ORTHO05D002626 8.9e-07 57.4 35 71.4
Rhsim06G0173700 Rhododendron simsii HOM05D002221 ORTHO05D002626 8.9e-07 57.4 35 68.6
Rhsim13G0143800 Rhododendron simsii HOM05D002221 ORTHO05D010139 8.9e-07 57.4 42 54.8
Sc20g0003960 Simmondsia chinensis HOM05D002221 ORTHO05D002626 8.9e-07 57.4 55 50.9
Eucgr.A01057 Eucalyptus grandis HOM05D002221 ORTHO05D002626 1.2e-06 57.0 34 67.6
Lalb_Chr24g0402701 Lupinus albus HOM05D002221 ORTHO05D002626 1.2e-06 57.0 34 73.5
Phvul.006G141900 Phaseolus vulgaris HOM05D002221 ORTHO05D002626 1.2e-06 57.0 35 68.6
Psat5g101320 Pisum sativum HOM05D002221 ORTHO05D002626 1.2e-06 57.0 41 61.0
vmacro09393 Vaccinium macrocarpon HOM05D002221 ORTHO05D002626 1.2e-06 57.0 36 63.9
Gohir.D11G156900 Gossypium hirsutum HOM05D002221 ORTHO05D002626 1.5e-06 56.6 59 55.9
Lj8A133T58 Lonicera japonica HOM05D002221 ORTHO05D002626 1.5e-06 56.6 35 65.7
Manes.01G168200 Manihot esculenta HOM05D002221 ORTHO05D002626 1.5e-06 56.6 43 55.8
Nitab4.5_0008167g0010 Nicotiana tabacum HOM05D002221 ORTHO05D002626 1.5e-06 56.6 35 65.7
Actinidia26846 Actinidia chinensis HOM05D002221 ORTHO05D002626 2.0e-06 56.2 43 51.2
CAN.G696.17 Capsicum annuum HOM05D002221 ORTHO05D002626 2.0e-06 56.2 35 65.7
Migut.M01418 Erythranthe guttata HOM05D002221 ORTHO05D002626 2.0e-06 56.2 44 56.8
Eucgr.D01432 Eucalyptus grandis HOM05D002221 ORTHO05D002626 2.0e-06 56.2 35 68.6
HanXRQChr04g0126691 Helianthus annuus HOM05D002221 ORTHO05D002626 2.0e-06 56.2 53 47.2
Solyc11g012480.3 Solanum lycopersicum HOM05D002221 ORTHO05D002626 2.0e-06 56.2 35 65.7
Sopen11g007220 Solanum pennellii HOM05D002221 ORTHO05D002626 2.0e-06 56.2 35 65.7
Thecc.01G189400 Theobroma cacao HOM05D002221 ORTHO05D002626 2.0e-06 56.2 35 68.6
Phvul.006G013500 Phaseolus vulgaris HOM05D002221 ORTHO05D002626 2.6e-06 55.8 35 71.4
Psat0s2027g0080 Pisum sativum HOM05D002221 ORTHO05D002626 2.6e-06 55.8 35 60.0
PGSC0003DMG401028822 Solanum tuberosum HOM05D002221 ORTHO05D002626 2.6e-06 55.8 35 65.7
CAN.G294.14 Capsicum annuum HOM05D002221 ORTHO05D002626 3.4e-06 55.5 51 52.9
PSO339G5934 Papaver somniferum HOM05D002221 ORTHO05D002626 3.4e-06 55.5 41 63.4
Hund21903 Selenicereus undatus HOM05D002221 ORTHO05D002626 3.4e-06 55.5 34 67.6
SGA_v2.0_scaffold73G24521 Striga asiatica HOM05D002221 ORTHO05D002626 3.4e-06 55.5 34 67.6
COL.COLO4_31910 Corchorus olitorius HOM05D002221 ORTHO05D002626 4.4e-06 55.1 38 60.5
Lj6g0026578 Lotus japonicus HOM05D002221 ORTHO05D002626 4.4e-06 55.1 35 65.7
MD10G1258800 Malus domestica HOM05D002221 ORTHO05D002626 4.4e-06 55.1 35 60.0
Medtr3g083230 Medicago truncatula HOM05D002221 ORTHO05D002626 4.4e-06 55.1 35 65.7
PSO384G3302 Papaver somniferum HOM05D002221 ORTHO05D002626 4.4e-06 55.1 35 71.4
Prupe.4G007900 Prunus persica HOM05D002221 ORTHO05D002626 4.4e-06 55.1 35 60.0
QL05p069039 Quercus lobata HOM05D002221 ORTHO05D002626 4.4e-06 55.1 31 71.0
THA.LOC104819045 Tarenaya hassleriana HOM05D002221 ORTHO05D002626 4.4e-06 55.1 64 48.4
TPR.G19334 Trifolium pratense HOM05D002221 ORTHO05D002626 4.4e-06 55.1 35 65.7
Zm00001eb021070 Zea mays HOM05D002221 ORTHO05D002626 4.4e-06 55.1 35 60.0
Aqoxy1G04013 Aquilegia oxysepala HOM05D002221 ORTHO05D002626 5.7e-06 54.7 35 68.6
Migut.M00022 Erythranthe guttata HOM05D002221 ORTHO05D002626 5.7e-06 54.7 35 65.7
Oeu059037.1 Olea europaea HOM05D002221 ORTHO05D002626 5.7e-06 54.7 35 68.6
RcHm_v2.0_Chr5g0000951 Rosa chinensis HOM05D002221 ORTHO05D002626 5.7e-06 54.7 35 65.7
MSTRG.7153 Avicennia marina HOM05D002221 ORTHO05D002626 7.5e-06 54.3 35 57.1
FvH4_3g00700 Fragaria vesca HOM05D002221 ORTHO05D002626 7.5e-06 54.3 35 62.9
Gohir.D06G216600 Gossypium hirsutum HOM05D002221 ORTHO05D002626 7.5e-06 54.3 42 54.8
Gorai.010G249600 Gossypium raimondii HOM05D002221 ORTHO05D002626 7.5e-06 54.3 42 54.8
arahy.Tifrunner.gnm1.ann1.J0AY6V Arachis hypogaea HOM05D002221 ORTHO05D010139 9.8e-06 53.9 33 66.7
arahy.Tifrunner.gnm1.ann1.LWZP2H Arachis hypogaea HOM05D002221 ORTHO05D010139 9.8e-06 53.9 33 66.7


User provided reference genes

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