Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g28500 Fragaria vesca HOM05D001068 ORTHO05D029604 6.0e-59 230.7 123 100.0
FAN14G5608 Fragaria x ananassa HOM05D001068 ORTHO05D029604 1.4e-28 129.8 63 98.4
FAN18G4470 Fragaria x ananassa HOM05D001068 ORTHO05D029604 4.2e-20 101.7 53 94.3
FvH4_6g26900 Fragaria vesca HOM05D001068 ORTHO05D002190 3.4e-14 82.0 43 90.7
FAN14G5876 Fragaria x ananassa HOM05D001068 ORTHO05D002190 3.4e-14 82.0 43 90.7
FAN05G5054 Fragaria x ananassa HOM05D001068 ORTHO05D002190 7.7e-14 80.9 43 88.4
Prupe.3G127000 Prunus persica HOM05D001068 ORTHO05D002190 7.9e-11 70.9 43 79.1
MD17G1234100 Malus domestica HOM05D001068 ORTHO05D002190 1.4e-10 70.1 43 74.4
Nn1g04278 Nelumbo nucifera HOM05D001068 ORTHO05D002190 1.8e-10 69.7 43 74.4
RcHm_v2.0_Chr2g0128641 Rosa chinensis HOM05D001068 ORTHO05D002190 2.3e-10 69.3 43 74.4
PSO541G4864 Papaver somniferum HOM05D001068 ORTHO05D002190 3.0e-10 68.9 43 74.4
PSO675G3167 Papaver somniferum HOM05D001068 ORTHO05D002190 3.0e-10 68.9 43 74.4
ClCG02G010170 Citrullus lanatus HOM05D001068 ORTHO05D002190 3.9e-10 68.6 43 72.1
Ciclev10014502m.g Citrus clementina HOM05D001068 ORTHO05D002190 5.1e-10 68.2 43 72.1
TAR627G0187 Trochodendron aralioides HOM05D001068 ORTHO05D002190 5.1e-10 68.2 43 69.8
Cc05_g07930 Coffea canephora HOM05D001068 ORTHO05D002190 6.7e-10 67.8 43 72.1
Dinv02425 Davidia involucrata HOM05D001068 ORTHO05D002190 8.8e-10 67.4 43 72.1
Gohir.A01G019800 Gossypium hirsutum HOM05D001068 ORTHO05D002190 1.1e-09 67.0 45 64.4
Gohir.D01G018400 Gossypium hirsutum HOM05D001068 ORTHO05D002190 1.1e-09 67.0 45 64.4
Gorai.002G020600 Gossypium raimondii HOM05D001068 ORTHO05D002190 1.1e-09 67.0 45 64.4
Hma1.2p1_0002F.1_g002410 Hydrangea macrophylla HOM05D001068 ORTHO05D002190 1.1e-09 67.0 43 72.1
CsaV3_2G034560 Cucumis sativus L. HOM05D001068 ORTHO05D002190 1.5e-09 66.6 43 69.8
Gohir.D01G018500 Gossypium hirsutum HOM05D001068 ORTHO05D002190 1.5e-09 66.6 45 66.7
Gorai.002G020700 Gossypium raimondii HOM05D001068 ORTHO05D002190 1.5e-09 66.6 45 66.7
PGR142G0739 Punica granatum HOM05D001068 ORTHO05D002190 1.5e-09 66.6 43 67.4
MELO3C019320.2 Cucumis melo HOM05D001068 ORTHO05D002190 2.0e-09 66.2 43 69.8
Thhalv10006988m.g Eutrema salsugineum HOM05D001068 ORTHO05D002190 2.6e-09 65.9 43 72.1
Lj3g0009326 Lotus japonicus HOM05D001068 ORTHO05D002190 2.6e-09 65.9 76 51.3
Oeu000573.1 Olea europaea HOM05D001068 ORTHO05D002190 2.6e-09 65.9 43 69.8
Oeu064840.1 Olea europaea HOM05D001068 ORTHO05D002190 2.6e-09 65.9 43 72.1
Potri.013G123500 Populus trichocarpa HOM05D001068 ORTHO05D002190 2.6e-09 65.9 43 72.1
Sp1g05100 Schrenkiella parvula HOM05D001068 ORTHO05D002190 2.6e-09 65.9 43 72.1
Sc06g0009140 Simmondsia chinensis HOM05D001068 ORTHO05D002190 2.6e-09 65.9 43 74.4
Lj8A106G57 Lonicera japonica HOM05D001068 ORTHO05D002190 3.3e-09 65.5 43 67.4
AL1G16310 Arabidopsis lyrata HOM05D001068 ORTHO05D002190 4.4e-09 65.1 43 72.1
AT1G06290 Arabidopsis thaliana HOM05D001068 ORTHO05D002190 4.4e-09 65.1 43 72.1
Carub.0001s0566 Capsella rubella HOM05D001068 ORTHO05D002190 4.4e-09 65.1 43 72.1
CARHR005870 Cardamine hirsuta HOM05D001068 ORTHO05D002190 4.4e-09 65.1 43 69.8
Gohir.A01G019900 Gossypium hirsutum HOM05D001068 ORTHO05D002190 4.4e-09 65.1 45 62.2
Manes.12G092800 Manihot esculenta HOM05D001068 ORTHO05D002190 4.4e-09 65.1 43 69.8
Atru.chr6.2845 Acer truncatum HOM05D001068 ORTHO05D002190 5.7e-09 64.7 43 67.4
Duzib052G0179 Durio zibethinus HOM05D001068 ORTHO05D002190 5.7e-09 64.7 43 67.4
Gohir.A03G153650 Gossypium hirsutum HOM05D001068 ORTHO05D002190 5.7e-09 64.7 43 65.1
Sabra13G0102500 Salix brachista HOM05D001068 ORTHO05D002190 5.7e-09 64.7 43 69.8
TWI59G1279 Tripterygium wilfordii HOM05D001068 ORTHO05D002190 5.7e-09 64.7 43 67.4
COL.COLO4_04707 Corchorus olitorius HOM05D001068 ORTHO05D002190 7.4e-09 64.3 43 65.1
Gorai.005G198300 Gossypium raimondii HOM05D001068 ORTHO05D002190 7.4e-09 64.3 43 62.8
Sed0014357 Sechium edule HOM05D001068 ORTHO05D002190 7.4e-09 64.3 43 69.8
vmacro12355 Vaccinium macrocarpon HOM05D001068 ORTHO05D002190 7.4e-09 64.3 42 69.0
CANSAT64G0075 Cannabis sativa HOM05D001068 ORTHO05D002190 1.3e-08 63.5 43 67.4
Thecc.02G188700 Theobroma cacao HOM05D001068 ORTHO05D002190 1.3e-08 63.5 43 67.4
A10p05020 Brassica napus HOM05D001068 ORTHO05D002190 2.2e-08 62.8 43 65.1
C05p04620 Brassica napus HOM05D001068 ORTHO05D002190 2.2e-08 62.8 43 65.1
BolC5t29234H Brassica oleracea HOM05D001068 ORTHO05D002190 2.2e-08 62.8 43 65.1
BraA10t42768Z Brassica rapa HOM05D001068 ORTHO05D002190 2.2e-08 62.8 43 65.1
CDE08G0847 Ceratophyllum demersum HOM05D001068 ORTHO05D002190 2.2e-08 62.8 43 65.1
Ca_18909_v3 Cicer arietinum L. HOM05D001068 ORTHO05D002190 2.2e-08 62.8 43 69.8
Psat7g166960 Pisum sativum HOM05D001068 ORTHO05D002190 2.2e-08 62.8 43 69.8
Rhsim06G0135500 Rhododendron simsii HOM05D001068 ORTHO05D002190 2.2e-08 62.8 43 67.4
Aa31LG1G7310 Aethionema arabicum HOM05D001068 ORTHO05D002190 2.8e-08 62.4 43 65.1
Lalb_Chr03g0029731 Lupinus albus HOM05D001068 ORTHO05D002190 2.8e-08 62.4 43 67.4
Medtr4g079290 Medicago truncatula HOM05D001068 ORTHO05D002190 2.8e-08 62.4 43 69.8
SalBow7G1339 Salvia bowleyana HOM05D001068 ORTHO05D002190 2.8e-08 62.4 43 65.1
TPR.G34856 Trifolium pratense HOM05D001068 ORTHO05D002190 2.8e-08 62.4 43 69.8
Actinidia10988 Actinidia chinensis HOM05D001068 ORTHO05D002190 3.7e-08 62.0 43 65.1
BcaB02g06807 Brassica carinata HOM05D001068 ORTHO05D002190 4.8e-08 61.6 43 62.8
Cfa014679 Carpinus fangiana HOM05D001068 ORTHO05D002190 4.8e-08 61.6 42 64.3
Haze_13278 Corylus avellana HOM05D001068 ORTHO05D002190 4.8e-08 61.6 42 64.3
Oeu000574.1 Olea europaea HOM05D001068 ORTHO05D002190 4.8e-08 61.6 43 67.4
Sed0001164 Sechium edule HOM05D001068 ORTHO05D002190 4.8e-08 61.6 43 62.8
Sed0007318 Sechium edule HOM05D001068 ORTHO05D002190 4.8e-08 61.6 43 62.8
SGA_v2.0_scaffold258G45790 Striga asiatica HOM05D001068 ORTHO05D002190 4.8e-08 61.6 43 65.1
THA.LOC104800850 Tarenaya hassleriana HOM05D001068 ORTHO05D002190 4.8e-08 61.6 43 60.5
BcaC05g24286 Brassica carinata HOM05D001068 ORTHO05D002190 6.3e-08 61.2 43 65.1
Glyma.12G120300 Glycine max HOM05D001068 ORTHO05D002190 6.3e-08 61.2 42 69.0
Sabra19G0105800 Salix brachista HOM05D001068 ORTHO05D002190 6.3e-08 61.2 43 65.1
AL1G16320 Arabidopsis lyrata HOM05D001068 ORTHO05D002190 8.2e-08 60.8 43 65.1
AT1G06310 Arabidopsis thaliana HOM05D001068 ORTHO05D002190 8.2e-08 60.8 43 65.1
BcaC05g24275 Brassica carinata HOM05D001068 ORTHO05D002190 8.2e-08 60.8 43 65.1
C05p04640 Brassica napus HOM05D001068 ORTHO05D002190 8.2e-08 60.8 43 65.1
Gohir.D12G144200 Gossypium hirsutum HOM05D001068 ORTHO05D002190 8.2e-08 60.8 43 62.8
Gorai.008G155500 Gossypium raimondii HOM05D001068 ORTHO05D002190 8.2e-08 60.8 43 62.8
Lj3g0024792 Lotus japonicus HOM05D001068 ORTHO05D002190 8.2e-08 60.8 42 69.0
HPP92_027388 Vanilla planifolia HOM05D001068 ORTHO05D002190 8.2e-08 60.8 43 62.8
BcaB02g06804 Brassica carinata HOM05D001068 ORTHO05D002190 1.1e-07 60.5 43 65.1
BolC5t29235H Brassica oleracea HOM05D001068 ORTHO05D020229 1.1e-07 60.5 43 65.1
BolC5t29237H Brassica oleracea HOM05D001068 ORTHO05D002190 1.1e-07 60.5 43 65.1
Gohir.A12G139700 Gossypium hirsutum HOM05D001068 ORTHO05D002190 1.1e-07 60.5 43 60.5
A10p05050 Brassica napus HOM05D001068 ORTHO05D002190 1.4e-07 60.1 43 65.1
BraA10t42771Z Brassica rapa HOM05D001068 ORTHO05D002190 1.4e-07 60.1 43 65.1
Cpa.g.sc50.2 Carica papaya HOM05D001068 ORTHO05D002190 1.4e-07 60.1 43 62.8
ATR0602G078 Amborella trichopoda HOM05D001068 ORTHO05D002190 1.8e-07 59.7 43 62.8
Thhalv10009440m.g Eutrema salsugineum HOM05D001068 ORTHO05D002190 1.8e-07 59.7 43 65.1
Gorai.009G299600 Gossypium raimondii HOM05D001068 ORTHO05D002190 1.8e-07 59.7 41 63.4
VMungo1127G1013 Vigna mungo HOM05D001068 ORTHO05D002190 1.8e-07 59.7 44 61.4
VMungo1127G1511 Vigna mungo HOM05D001068 ORTHO05D020229 1.8e-07 59.7 44 61.4
CSS0000404 Camellia sinensis var. sinensis HOM05D001068 ORTHO05D002190 2.4e-07 59.3 43 65.1
CSS0049947 Camellia sinensis var. sinensis HOM05D001068 ORTHO05D002190 2.4e-07 59.3 43 65.1
Peaxi162Scf00241g01211 Petunia axillaris HOM05D001068 ORTHO05D002190 2.4e-07 59.3 45 57.8
VMungo1127G1906 Vigna mungo HOM05D001068 ORTHO05D002190 2.4e-07 59.3 42 64.3
BcaB02g06806 Brassica carinata HOM05D001068 ORTHO05D002190 3.1e-07 58.9 43 62.8
Duzib248G0800 Durio zibethinus HOM05D001068 ORTHO05D002190 3.1e-07 58.9 43 65.1
Potri.019G092600 Populus trichocarpa HOM05D001068 ORTHO05D002190 3.1e-07 58.9 43 62.8
Migut.M00195 Erythranthe guttata HOM05D001068 ORTHO05D002190 4.1e-07 58.5 43 62.8
Glyma.06G285400 Glycine max HOM05D001068 ORTHO05D002190 4.1e-07 58.5 42 66.7
MBI07_g06445_MAGBIO Magnolia biondii HOM05D001068 ORTHO05D002190 4.1e-07 58.5 43 65.1
Os06g0354500 Oryza sativa ssp. japonica HOM05D001068 ORTHO05D002190 5.3e-07 58.2 42 61.9
Phvul.011G116000 Phaseolus vulgaris HOM05D001068 ORTHO05D002190 7.0e-07 57.8 42 64.3
BcaC05g24284 Brassica carinata HOM05D001068 ORTHO05D002190 9.1e-07 57.4 43 60.5
Eucgr.K01080 Eucalyptus grandis HOM05D001068 ORTHO05D002190 9.1e-07 57.4 43 62.8
vmacro12356 Vaccinium macrocarpon HOM05D001068 ORTHO05D020229 9.1e-07 57.4 70 52.9
arahy.Tifrunner.gnm1.ann1.C7HVNL Arachis hypogaea HOM05D001068 ORTHO05D002190 1.2e-06 57.0 42 64.3
arahy.Tifrunner.gnm1.ann1.JX5WJ5 Arachis hypogaea HOM05D001068 ORTHO05D002190 1.2e-06 57.0 42 64.3
BolC5t29403H Brassica oleracea HOM05D001068 ORTHO05D002190 1.2e-06 57.0 43 60.5
Hund07850 Selenicereus undatus HOM05D001068 ORTHO05D020229 1.2e-06 57.0 43 62.8
Hund00993 Selenicereus undatus HOM05D001068 ORTHO05D002190 1.5e-06 56.6 43 62.8
CiPaw.03G183200 Carya illinoinensis HOM05D001068 ORTHO05D002190 2.0e-06 56.2 43 53.5
COL.COLO4_03961 Corchorus olitorius HOM05D001068 ORTHO05D002190 2.0e-06 56.2 62 46.8
Gohir.D05G284800 Gossypium hirsutum HOM05D001068 ORTHO05D002190 3.4e-06 55.5 41 61.0
Solyc10g008110.4 Solanum lycopersicum HOM05D001068 ORTHO05D002190 3.4e-06 55.5 43 62.8
Sopen10g003980 Solanum pennellii HOM05D001068 ORTHO05D002190 4.5e-06 55.1 43 62.8
Nitab4.5_0005651g0020 Nicotiana tabacum HOM05D001068 ORTHO05D002190 5.9e-06 54.7 43 58.1
Ah.01g003900 Amaranthus hybridus HOM05D001068 ORTHO05D002190 7.7e-06 54.3 43 53.5
AUR62036084 Chenopodium quinoa HOM05D001068 ORTHO05D002190 7.7e-06 54.3 43 55.8
Medtr2g033680 Medicago truncatula HOM05D001068 ORTHO05D029604 7.7e-06 54.3 40 62.5


User provided reference genes

Program Settings