Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g28450 Fragaria vesca HOM05D001125 ORTHO05D003189 6.1e-49 197.2 102 100.0
FAN05G4313 Fragaria x ananassa HOM05D001125 ORTHO05D003189 1.9e-34 149.1 96 85.4
FAN09G1980 Fragaria x ananassa HOM05D001125 ORTHO05D003189 1.9e-34 149.1 96 85.4
FvH4_6g26550 Fragaria vesca HOM05D001125 ORTHO05D003189 9.4e-34 146.7 96 83.3
FAN02G2881 Fragaria x ananassa HOM05D001125 ORTHO05D003189 9.4e-34 146.7 96 84.4
FAN14G4163 Fragaria x ananassa HOM05D001125 ORTHO05D003189 9.4e-34 146.7 96 83.3
FAN17G1093 Fragaria x ananassa HOM05D001125 ORTHO05D003189 2.7e-33 145.2 96 83.3
FvH4_2g12101 Fragaria vesca HOM05D001125 ORTHO05D003189 1.0e-32 143.3 99 79.8
FAN02G4535 Fragaria x ananassa HOM05D001125 ORTHO05D003189 6.8e-32 140.6 103 78.6
FAN18G4467 Fragaria x ananassa HOM05D001125 ORTHO05D003189 5.0e-27 124.4 82 81.7
FAN24G1048 Fragaria x ananassa HOM05D001125 ORTHO05D003189 1.5e-26 122.9 90 75.6
RcHm_v2.0_Chr2g0127601 Rosa chinensis HOM05D001125 ORTHO05D003189 7.2e-26 120.6 97 75.3
FvH4_c15g00040 Fragaria vesca HOM05D001125 ORTHO05D003189 6.1e-25 117.5 96 70.8
FvH4_6g25731 Fragaria vesca HOM05D001125 ORTHO05D003189 8.0e-25 117.1 94 74.5
FvH4_6g25690 Fragaria vesca HOM05D001125 ORTHO05D003189 1.4e-24 116.3 85 77.6
FvH4_c17g00020 Fragaria vesca HOM05D001125 ORTHO05D003189 8.9e-24 113.6 94 70.2
Prupe.3G140300 Prunus persica HOM05D001125 ORTHO05D003189 1.3e-22 109.8 97 68.0
QL08p039736 Quercus lobata HOM05D001125 ORTHO05D003189 5.4e-21 104.4 102 63.7
FvH4_5g28561 Fragaria vesca HOM05D001125 ORTHO05D003189 1.2e-20 103.2 97 64.9
FAN05G1855 Fragaria x ananassa HOM05D001125 ORTHO05D003189 1.3e-19 99.8 89 67.4
CiPaw.03G179800 Carya illinoinensis HOM05D001125 ORTHO05D003189 2.3e-19 99.0 105 61.9
FvH4_2g11953 Fragaria vesca HOM05D004580 ORTHO05D000007 3.8e-19 98.2 102 58.8
MD09G1243900 Malus domestica HOM05D001125 ORTHO05D003189 1.5e-18 96.3 93 65.6
FAN20G0613 Fragaria x ananassa HOM05D001125 ORTHO05D003189 2.5e-18 95.5 76 69.7
Haze_13207 Corylus avellana HOM05D001125 ORTHO05D003189 3.3e-18 95.1 103 57.3
Eucgr.A01835 Eucalyptus grandis HOM05D001125 ORTHO05D003189 7.3e-18 94.0 96 59.4
MD17G1235800 Malus domestica HOM05D001125 ORTHO05D003189 7.3e-18 94.0 95 63.2
Manes.13G144200 Manihot esculenta HOM05D001125 ORTHO05D003189 1.2e-17 93.2 106 58.5
CsaV3_7G005850 Cucumis sativus L. HOM05D001125 ORTHO05D003189 1.6e-17 92.8 94 63.8
Atru.chr6.2891 Acer truncatum HOM05D001125 ORTHO05D003189 2.1e-17 92.4 104 58.7
ClCG07G002500 Citrullus lanatus HOM05D001125 ORTHO05D003189 2.1e-17 92.4 94 61.7
Sed0000582 Sechium edule HOM05D001125 ORTHO05D003189 2.1e-17 92.4 92 65.2
Potri.017G013100 Populus trichocarpa HOM05D001125 ORTHO05D003189 3.6e-17 91.7 99 59.6
TWI23G1275 Tripterygium wilfordii HOM05D001125 ORTHO05D003189 6.1e-17 90.9 101 58.4
MELO3C018707.2 Cucumis melo HOM05D001125 ORTHO05D003189 1.4e-16 89.7 94 61.7
Thecc.02G183400 Theobroma cacao HOM05D001125 ORTHO05D003189 1.4e-16 89.7 98 60.2
Actinidia11095 Actinidia chinensis HOM05D001125 ORTHO05D003189 1.8e-16 89.4 103 56.3
Sed0012231 Sechium edule HOM05D001125 ORTHO05D003189 2.3e-16 89.0 105 58.1
Gohir.D01G017600 Gossypium hirsutum HOM05D001125 ORTHO05D003189 3.0e-16 88.6 104 55.8
Sabra17G0010600 Salix brachista HOM05D001125 ORTHO05D003189 4.0e-16 88.2 99 58.6
TWI14G1126 Tripterygium wilfordii HOM05D001125 ORTHO05D003189 5.2e-16 87.8 98 57.1
DCAR_021255 Daucus carota HOM05D001125 ORTHO05D003189 8.9e-16 87.0 109 51.4
CSS0025160 Camellia sinensis var. sinensis HOM05D001125 ORTHO05D003189 1.2e-15 86.7 95 55.8
Carub.0001s0288 Capsella rubella HOM05D001125 ORTHO05D003189 1.2e-15 86.7 95 57.9
Sp1g02640 Schrenkiella parvula HOM05D001125 ORTHO05D003189 1.2e-15 86.7 106 51.9
BcaNung06826 Brassica carinata HOM05D001125 ORTHO05D003189 1.5e-15 86.3 106 50.9
C05p02130 Brassica napus HOM05D001125 ORTHO05D003189 1.5e-15 86.3 106 50.9
BolC5t28990H Brassica oleracea HOM05D001125 ORTHO05D003189 1.5e-15 86.3 106 50.9
BraA10t42499Z Brassica rapa HOM05D001125 ORTHO05D003189 1.5e-15 86.3 106 50.9
Gorai.002G019900 Gossypium raimondii HOM05D001125 ORTHO05D003189 1.5e-15 86.3 93 59.1
FAN24G2829 Fragaria x ananassa HOM05D001125 ORTHO05D003189 2.0e-15 85.9 90 58.9
A10p02320 Brassica napus HOM05D001125 ORTHO05D003189 2.6e-15 85.5 106 50.0
Thhalv10006864m.g Eutrema salsugineum HOM05D001125 ORTHO05D003189 2.6e-15 85.5 106 50.9
COL.COLO4_05959 Corchorus olitorius HOM05D001125 ORTHO05D003189 3.4e-15 85.1 95 60.0
Sopen10g004070 Solanum pennellii HOM05D001125 ORTHO05D003189 3.4e-15 85.1 95 53.7
Rhsim06G0138900 Rhododendron simsii HOM05D001125 ORTHO05D003189 4.4e-15 84.7 103 57.3
GSVIVG01020580001 Vitis vinifera HOM05D001125 ORTHO05D003189 5.8e-15 84.3 93 55.9
Potri.007G138600 Populus trichocarpa HOM05D001125 ORTHO05D003189 7.5e-15 84.0 107 54.2
Sopen07g027760 Solanum pennellii HOM05D001125 ORTHO05D003189 7.5e-15 84.0 98 55.1
BcaC05g24510 Brassica carinata HOM05D001125 ORTHO05D003189 9.8e-15 83.6 106 50.0
Ciclev10014346m.g Citrus clementina HOM05D001125 ORTHO05D003189 9.8e-15 83.6 98 57.1
PGSC0003DMG400021859 Solanum tuberosum HOM05D001125 ORTHO05D003189 9.8e-15 83.6 95 52.6
AL1G13330 Arabidopsis lyrata HOM05D001125 ORTHO05D003189 1.3e-14 83.2 95 55.8
Cpa.g.sc83.73 Carica papaya HOM05D001125 ORTHO05D003189 1.3e-14 83.2 108 51.9
Gohir.A01G019000 Gossypium hirsutum HOM05D001125 ORTHO05D003189 1.3e-14 83.2 103 54.4
Solyc10g008210.3 Solanum lycopersicum HOM05D001125 ORTHO05D003189 1.7e-14 82.8 95 52.6
TPR.G31026 Trifolium pratense HOM05D001125 ORTHO05D003189 1.7e-14 82.8 101 55.4
vmacro12331 Vaccinium macrocarpon HOM05D001125 ORTHO05D003189 1.7e-14 82.8 96 56.2
CARHR003110 Cardamine hirsuta HOM05D001125 ORTHO05D003189 2.2e-14 82.4 107 52.3
Duzib052G0690 Durio zibethinus HOM05D001125 ORTHO05D003189 2.2e-14 82.4 96 58.3
Hma1.2p1_2181F.1_g316280 Hydrangea macrophylla HOM05D001125 ORTHO05D003189 2.2e-14 82.4 97 53.6
Aqoxy1G02346 Aquilegia oxysepala HOM05D001125 ORTHO05D003189 2.9e-14 82.0 95 54.7
Duzib132G1183 Durio zibethinus HOM05D001125 ORTHO05D003189 2.9e-14 82.0 98 58.2
Thhalv10003404m.g Eutrema salsugineum HOM05D001125 ORTHO05D003189 2.9e-14 82.0 102 49.0
Sabra07G0111700 Salix brachista HOM05D001125 ORTHO05D003189 4.9e-14 81.3 98 56.1
VMungo1127G0389 Vigna mungo HOM05D001125 ORTHO05D003189 4.9e-14 81.3 89 61.8
BcaC07g42227 Brassica carinata HOM05D001125 ORTHO05D003189 6.4e-14 80.9 106 50.9
Medtr4g078565 Medicago truncatula HOM05D001125 ORTHO05D003189 6.4e-14 80.9 105 53.3
Sp2g09090 Schrenkiella parvula HOM05D001125 ORTHO05D003189 6.4e-14 80.9 102 49.0
THA.LOC104801165 Tarenaya hassleriana HOM05D001125 ORTHO05D003189 6.4e-14 80.9 95 54.7
Dinv06876 Davidia involucrata HOM05D001125 ORTHO05D003189 8.3e-14 80.5 93 57.0
Lj3g0021800 Lotus japonicus HOM05D001125 ORTHO05D003189 8.3e-14 80.5 100 56.0
Phvul.011G125500 Phaseolus vulgaris HOM05D001125 ORTHO05D003189 8.3e-14 80.5 101 57.4
Solyc07g053790.2 Solanum lycopersicum HOM05D001125 ORTHO05D003189 1.1e-13 80.1 98 54.1
Ca_18932_v3 Cicer arietinum L. HOM05D001125 ORTHO05D003189 1.4e-13 79.7 101 54.5
Gorai.005G200300 Gossypium raimondii HOM05D001125 ORTHO05D003189 2.4e-13 79.0 90 60.0
FAN18G2268 Fragaria x ananassa HOM05D001125 ORTHO05D029363 4.1e-13 78.2 94 54.3
Nitab4.5_0004959g0070 Nicotiana tabacum HOM05D001125 ORTHO05D003189 4.1e-13 78.2 94 53.2
Psat0s3446g0040 Pisum sativum HOM05D001125 ORTHO05D003189 4.1e-13 78.2 98 56.1
PGR042G1351 Punica granatum HOM05D001125 ORTHO05D003189 4.1e-13 78.2 98 49.0
arahy.Tifrunner.gnm1.ann1.CC6EIW Arachis hypogaea HOM05D001125 ORTHO05D003189 5.4e-13 77.8 94 55.3
Glyma.12G116700 Glycine max HOM05D001125 ORTHO05D003189 5.4e-13 77.8 101 55.4
BcaC06g34577 Brassica carinata HOM05D001125 ORTHO05D003189 7.0e-13 77.4 90 52.2
TAR629G2008 Trochodendron aralioides HOM05D001125 ORTHO05D003189 7.0e-13 77.4 102 52.9
BolC7t43222H Brassica oleracea HOM05D001125 ORTHO05D003189 9.2e-13 77.0 90 52.2
Glyma.06G290300 Glycine max HOM05D001125 ORTHO05D003189 9.2e-13 77.0 101 55.4
Sc21g0003100 Simmondsia chinensis HOM05D001125 ORTHO05D003189 9.2e-13 77.0 92 54.3
Peaxi162Scf00008g00612 Petunia axillaris HOM05D001125 ORTHO05D003189 1.6e-12 76.3 86 55.8
arahy.Tifrunner.gnm1.ann1.48RFXK Arachis hypogaea HOM05D001125 ORTHO05D003189 2.0e-12 75.9 112 49.1
C07p26940 Brassica napus HOM05D001125 ORTHO05D003189 2.0e-12 75.9 89 52.8
CDE06G0597 Ceratophyllum demersum HOM05D001125 ORTHO05D003189 2.0e-12 75.9 90 51.1
CANSAT64G2845 Cannabis sativa HOM05D001125 ORTHO05D003189 2.7e-12 75.5 94 52.1
CDE02G1458 Ceratophyllum demersum HOM05D001125 ORTHO05D003189 2.7e-12 75.5 91 50.5
Gohir.A03G155500 Gossypium hirsutum HOM05D001125 ORTHO05D003189 2.7e-12 75.5 90 56.7
Hma1.2p1_0002F.1_g002120 Hydrangea macrophylla HOM05D001125 ORTHO05D003189 2.7e-12 75.5 86 55.8
BcaC06g31636 Brassica carinata HOM05D001125 ORTHO05D003189 3.5e-12 75.1 90 52.2
Cc05_g07520 Coffea canephora HOM05D001125 ORTHO05D003189 4.6e-12 74.7 96 54.2
Dinv04810 Davidia involucrata HOM05D001125 ORTHO05D003189 4.6e-12 74.7 87 55.2
FvH4_6g25610 Fragaria vesca HOM05D001125 ORTHO05D003189 6.0e-12 74.3 96 52.1
Lalb_Chr03g0029561 Lupinus albus HOM05D001125 ORTHO05D003189 6.0e-12 74.3 100 52.0
Nitab4.5_0006721g0030 Nicotiana tabacum HOM05D001125 ORTHO05D003189 7.8e-12 73.9 94 51.1
arahy.Tifrunner.gnm1.ann1.NJX80N Arachis hypogaea HOM05D001125 ORTHO05D003189 1.0e-11 73.6 94 52.1
AT1G03780 Arabidopsis thaliana HOM05D001125 ORTHO05D003189 1.7e-11 72.8 86 55.8
Nn1g04165 Nelumbo nucifera HOM05D001125 ORTHO05D003189 1.7e-11 72.8 95 53.7
CAN.G209.29 Capsicum annuum HOM05D001125 ORTHO05D003189 2.3e-11 72.4 98 49.0
PSO541G3419 Papaver somniferum HOM05D001125 ORTHO05D003189 3.0e-11 72.0 95 53.7
PSO675G6510 Papaver somniferum HOM05D001125 ORTHO05D003189 3.0e-11 72.0 95 53.7
ECA233G3717 Erigeron canadensis HOM05D001125 ORTHO05D003189 3.9e-11 71.6 97 48.5
Nn1g06463 Nelumbo nucifera HOM05D001125 ORTHO05D003189 3.9e-11 71.6 96 51.0
arahy.Tifrunner.gnm1.ann1.081SLL Arachis hypogaea HOM05D001125 ORTHO05D003189 5.0e-11 71.2 94 51.1
BolC8t52791H Brassica oleracea HOM05D001125 ORTHO05D003189 8.6e-11 70.5 101 46.5
Aa31LG1G8990 Aethionema arabicum HOM05D001125 ORTHO05D003189 1.1e-10 70.1 93 49.5
Lj1C712T4 Lonicera japonica HOM05D001125 ORTHO05D003189 1.1e-10 70.1 89 52.8
PGSC0003DMG400013743 Solanum tuberosum HOM05D001125 ORTHO05D003189 1.5e-10 69.7 95 50.5
AUR62038884 Chenopodium quinoa HOM05D001125 ORTHO05D003189 1.9e-10 69.3 103 49.5
SalBow7G0071 Salvia bowleyana HOM05D001125 ORTHO05D003189 2.5e-10 68.9 94 52.1
SalBow7G3984 Salvia bowleyana HOM05D001125 ORTHO05D003189 2.5e-10 68.9 94 52.1
Solyc12g005480.2 Solanum lycopersicum HOM05D001125 ORTHO05D003189 2.5e-10 68.9 95 49.5
TAR627G0354 Trochodendron aralioides HOM05D001125 ORTHO05D003189 2.5e-10 68.9 93 51.6
TAR627G0421 Trochodendron aralioides HOM05D001125 ORTHO05D003189 2.5e-10 68.9 93 51.6
A09p68210 Brassica napus HOM05D001125 ORTHO05D003189 5.6e-10 67.8 106 45.3
HanXRQChr17g0554381 Helianthus annuus HOM05D001125 ORTHO05D003189 7.3e-10 67.4 100 48.0
Lsat_1_v5_gn_8_134661 Lactuca sativa HOM05D001125 ORTHO05D003189 9.5e-10 67.0 96 46.9
Os07g0507200 Oryza sativa ssp. japonica HOM05D001125 ORTHO05D003189 9.5e-10 67.0 93 46.2
C08p52650 Brassica napus HOM05D001125 ORTHO05D003189 1.2e-09 66.6 101 44.6
BraA09t42156Z Brassica rapa HOM05D001125 ORTHO05D003189 1.2e-09 66.6 97 47.4
unitig_46.g18245 Utricularia gibba HOM05D001125 ORTHO05D003189 1.6e-09 66.2 95 52.6
HanXRQChr17g0559321 Helianthus annuus HOM05D001125 ORTHO05D003189 2.1e-09 65.9 94 45.7
Sopen12g001480 Solanum pennellii HOM05D001125 ORTHO05D003189 2.8e-09 65.5 95 48.4
CAN.G988.4 Capsicum annuum HOM05D001125 ORTHO05D003189 3.6e-09 65.1 94 48.9
Oeu044723.1 Olea europaea HOM05D001125 ORTHO05D003189 8.0e-09 63.9 96 50.0
MSTRG.14940 Avicennia marina HOM05D001125 ORTHO05D003189 1.1e-08 63.5 94 50.0
SGA_v2.0_scaffold70G23508 Striga asiatica HOM05D001125 ORTHO05D003189 1.1e-08 63.5 108 46.3
Hma1.2p1_0225F.1_g094990 Hydrangea macrophylla HOM05D001125 ORTHO05D003189 1.8e-08 62.8 80 52.5
CAN.G1762.1 Capsicum annuum HOM05D001125 ORTHO05D003189 2.3e-08 62.4 94 46.8
HPP92_012417 Vanilla planifolia HOM05D001125 ORTHO05D003189 4.0e-08 61.6 84 46.4
FAN09G2333 Fragaria x ananassa HOM05D001125 ORTHO05D003189 8.9e-08 60.5 89 51.7
Hma1.2p1_0635F.1_g193150 Hydrangea macrophylla HOM05D001125 ORTHO05D003189 8.9e-08 60.5 80 52.5
Hma1.2p1_0766F.1_g215230 Hydrangea macrophylla HOM05D001125 ORTHO05D003189 8.9e-08 60.5 80 52.5
Hma1.2p1_1486F.1_g286545 Hydrangea macrophylla HOM05D001125 ORTHO05D003189 8.9e-08 60.5 80 52.5
vmacro09257 Vaccinium macrocarpon HOM05D001125 ORTHO05D003189 8.9e-08 60.5 125 36.8
MSTRG.6668 Avicennia marina HOM05D001125 ORTHO05D003189 1.2e-07 60.1 96 49.0
CAN.G397.60 Capsicum annuum HOM05D001125 ORTHO05D003189 1.5e-07 59.7 94 45.7
Nitab4.5_0002350g0080 Nicotiana tabacum HOM05D001125 ORTHO05D003189 2.6e-07 58.9 108 43.5
MBI02_g32401_MAGBIO Magnolia biondii HOM05D001125 ORTHO05D003189 4.4e-07 58.2 98 44.9
Zm00001eb322350 Zea mays HOM05D001125 ORTHO05D003189 5.8e-07 57.8 81 40.7
Migut.M00163 Erythranthe guttata HOM05D001125 ORTHO05D003189 7.5e-07 57.4 95 50.5
ATR0752G128 Amborella trichopoda HOM05D001125 ORTHO05D003189 9.8e-07 57.0 80 46.2
BcaB08g37326 Brassica carinata HOM05D001125 ORTHO05D003189 9.8e-07 57.0 58 58.6
FvH4_5g28440 Fragaria vesca HOM05D001125 ORTHO05D003189 1.3e-06 56.6 34 82.4
Peaxi162Scf00981g00045 Petunia axillaris HOM05D001125 ORTHO05D003189 1.7e-06 56.2 52 63.5
FvH4_5g28471 Fragaria vesca HOM05D001125 ORTHO05D003189 2.2e-06 55.8 27 96.3


User provided reference genes

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