Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g27030 Fragaria vesca HOM05D003333 ORTHO05D003836 4.1e-97 358.2 203 100.0
FAN13G2752 Fragaria x ananassa HOM05D003333 ORTHO05D003836 8.1e-61 237.7 205 64.9
FAN21G3730 Fragaria x ananassa HOM05D003333 ORTHO05D003836 2.6e-43 179.5 168 75.0
FAN08G3193 Fragaria x ananassa HOM05D003333 ORTHO05D003836 1.3e-42 177.2 182 69.2
FAN26G3012 Fragaria x ananassa HOM05D003333 ORTHO05D003836 2.4e-41 172.9 182 68.1
FAN16G1551 Fragaria x ananassa HOM05D003333 ORTHO05D003836 2.1e-37 159.8 174 67.8
FAN18G3430 Fragaria x ananassa HOM05D003333 ORTHO05D003836 1.0e-34 151.0 170 52.4
RcHm_v2.0_Chr2g0085481 Rosa chinensis HOM05D003333 ORTHO05D003836 7.6e-27 124.8 170 58.2
FvH4_5g27040 Fragaria vesca HOM05D003333 ORTHO05D003836 1.0e-23 114.4 173 57.2
FAN13G1111 Fragaria x ananassa HOM05D003333 ORTHO05D003836 3.3e-22 109.4 171 51.5
FAN26G2607 Fragaria x ananassa HOM05D003333 ORTHO05D003836 1.3e-21 107.5 171 56.7
FAN18G2716 Fragaria x ananassa HOM05D003333 ORTHO05D003836 2.4e-20 103.2 193 36.8
FAN23G0545 Fragaria x ananassa HOM05D003333 ORTHO05D003836 2.4e-20 103.2 171 55.6
Manes.14G145200 Manihot esculenta HOM05D003333 ORTHO05D003836 2.4e-20 103.2 170 38.8
Cpa.g.sc46.170 Carica papaya HOM05D003333 ORTHO05D003836 9.0e-20 101.3 209 35.4
Prupe.7G264700 Prunus persica HOM05D003333 ORTHO05D003836 9.0e-20 101.3 170 54.7
FvH4_1g00760 Fragaria vesca HOM05D003333 ORTHO05D003836 2.0e-19 100.1 170 55.3
FAN28G1118 Fragaria x ananassa HOM05D003333 ORTHO05D003836 2.0e-19 100.1 170 55.3
BolC9t57828H Brassica oleracea HOM05D003333 ORTHO05D003836 3.8e-18 95.9 171 43.3
Sp6g19570 Schrenkiella parvula HOM05D003333 ORTHO05D003836 3.8e-18 95.9 170 35.3
Atru.chr6.2482 Acer truncatum HOM05D003333 ORTHO05D003836 1.6e-16 90.5 170 34.7
A10p15260 Brassica napus HOM05D003333 ORTHO05D003836 2.1e-16 90.1 171 34.5
BraA10t43607Z Brassica rapa HOM05D003333 ORTHO05D003836 2.1e-16 90.1 171 34.5
HanXRQChr09g0244551 Helianthus annuus HOM05D003333 ORTHO05D003836 2.7e-16 89.7 170 49.4
AT5G57900 Arabidopsis thaliana HOM05D003333 ORTHO05D003836 1.8e-15 87.0 171 35.1
AL8G33960 Arabidopsis lyrata HOM05D003333 ORTHO05D003836 2.3e-15 86.7 171 34.5
Migut.J01369 Erythranthe guttata HOM05D003333 ORTHO05D003836 3.9e-15 85.9 170 48.8
MD02G1006200 Malus domestica HOM05D003333 ORTHO05D003836 3.9e-15 85.9 170 51.8
C09p49770 Brassica napus HOM05D003333 ORTHO05D003836 8.8e-15 84.7 171 40.9
CANSAT11G2442 Cannabis sativa HOM05D003333 ORTHO05D003836 1.1e-14 84.3 170 47.6
TWI34G1096 Tripterygium wilfordii HOM05D003333 ORTHO05D003836 1.5e-14 84.0 170 50.0
ATR0019G010 Amborella trichopoda HOM05D003333 ORTHO05D003836 2.0e-14 83.6 170 32.4
Sabra18G0089700 Salix brachista HOM05D003333 ORTHO05D003836 3.3e-14 82.8 170 50.0
TAR636G2329 Trochodendron aralioides HOM05D003333 ORTHO05D003836 3.3e-14 82.8 171 50.3
CSS0000248 Camellia sinensis var. sinensis HOM05D003333 ORTHO05D003836 5.7e-14 82.0 170 50.0
Gohir.A05G052600 Gossypium hirsutum HOM05D003333 ORTHO05D003836 5.7e-14 82.0 171 48.5
Zm00001eb177870 Zea mays HOM05D003333 ORTHO05D003836 7.4e-14 81.6 170 32.4
Gohir.D05G054300 Gossypium hirsutum HOM05D003333 ORTHO05D003836 2.2e-13 80.1 171 48.0
Gorai.009G056000 Gossypium raimondii HOM05D003333 ORTHO05D003836 2.2e-13 80.1 171 48.0
Carub.0008s1843 Capsella rubella HOM05D003333 ORTHO05D003836 6.3e-13 78.6 171 46.2
CDE04G3371 Ceratophyllum demersum HOM05D003333 ORTHO05D003836 6.3e-13 78.6 171 48.5
Cc00_g27050 Coffea canephora HOM05D003333 ORTHO05D003836 6.3e-13 78.6 170 47.6
Sed0000092 Sechium edule HOM05D003333 ORTHO05D003836 6.3e-13 78.6 170 48.8
ECA240G0541 Erigeron canadensis HOM05D003333 ORTHO05D003836 8.2e-13 78.2 170 46.5
Dinv43259 Davidia involucrata HOM05D003333 ORTHO05D003836 1.1e-12 77.8 170 47.6
Hma1.2p1_0222F.1_g093690 Hydrangea macrophylla HOM05D003333 ORTHO05D003836 1.4e-12 77.4 170 48.8
Lj9A718T41 Lonicera japonica HOM05D003333 ORTHO05D003836 1.4e-12 77.4 170 45.9
Duzib168G0432 Durio zibethinus HOM05D003333 ORTHO05D003836 1.8e-12 77.0 170 46.5
SGA_v2.0_scaffold265G46094 Striga asiatica HOM05D003333 ORTHO05D003836 1.8e-12 77.0 170 48.8
SGA_v2.0_scaffold65G22225 Striga asiatica HOM05D003333 ORTHO05D003836 1.8e-12 77.0 125 36.8
QL02p093741 Quercus lobata HOM05D003333 ORTHO05D003836 4.1e-12 75.9 171 49.7
Thecc.09G028300 Theobroma cacao HOM05D003333 ORTHO05D003836 4.1e-12 75.9 171 46.2
Ciclev10008985m.g Citrus clementina HOM05D003333 ORTHO05D003836 5.3e-12 75.5 170 46.5
Eucgr.L03182 Eucalyptus grandis HOM05D003333 ORTHO05D003836 9.1e-12 74.7 214 43.0
Aa31LG3G13720 Aethionema arabicum HOM05D003333 ORTHO05D003836 1.2e-11 74.3 170 46.5
Eucgr.C02501 Eucalyptus grandis HOM05D003333 ORTHO05D003836 1.2e-11 74.3 214 42.1
Potri.018G104900 Populus trichocarpa HOM05D003333 ORTHO05D003836 1.2e-11 74.3 171 47.4
DCAR_019403 Daucus carota HOM05D003333 ORTHO05D003836 2.0e-11 73.6 170 45.9
vmacro16794 Vaccinium macrocarpon HOM05D003333 ORTHO05D003836 2.0e-11 73.6 170 47.1
BcaC09g51854 Brassica carinata HOM05D003333 ORTHO05D003836 3.4e-11 72.8 169 44.4
BolC1t00817H Brassica oleracea HOM05D003333 ORTHO05D003836 3.4e-11 72.8 169 44.4
Rhsim01G0028000 Rhododendron simsii HOM05D003333 ORTHO05D003836 3.4e-11 72.8 170 46.5
HPP92_013422 Vanilla planifolia HOM05D003333 ORTHO05D003836 3.4e-11 72.8 170 45.3
Eucgr.L01446 Eucalyptus grandis HOM05D003333 ORTHO05D003836 4.5e-11 72.4 170 47.1
Oeu018383.3 Olea europaea HOM05D003333 ORTHO05D003836 4.5e-11 72.4 115 36.5
SalBow1G6609 Salvia bowleyana HOM05D003333 ORTHO05D003836 7.7e-11 71.6 170 46.5
Psat0s3930g0160 Pisum sativum HOM05D003333 ORTHO05D003836 1.0e-10 71.2 169 46.2
Carub.0005s1014 Capsella rubella HOM05D003333 ORTHO05D003836 1.7e-10 70.5 169 29.0
Lsat_1_v5_gn_7_50080 Lactuca sativa HOM05D003333 ORTHO05D003836 1.7e-10 70.5 170 45.9
Phvul.003G155100 Phaseolus vulgaris HOM05D003333 ORTHO05D003836 2.2e-10 70.1 170 46.5
Aqoxy7G03374 Aquilegia oxysepala HOM05D003333 ORTHO05D003836 2.9e-10 69.7 170 44.7
BcaNung04558 Brassica carinata HOM05D003333 ORTHO05D003836 2.9e-10 69.7 172 37.2
Dinv42841 Davidia involucrata HOM05D003333 ORTHO05D003836 2.9e-10 69.7 163 44.2
Ca_21138_v3 Cicer arietinum L. HOM05D003333 ORTHO05D003836 3.8e-10 69.3 170 45.3
Ca_21143_v3 Cicer arietinum L. HOM05D003333 ORTHO05D003836 3.8e-10 69.3 170 45.3
MBI15_g18227_MAGBIO Magnolia biondii HOM05D003333 ORTHO05D003836 3.8e-10 69.3 167 44.3
ClCG02G014400 Citrullus lanatus HOM05D003333 ORTHO05D003836 5.0e-10 68.9 170 47.1
CARHR271670 Cardamine hirsuta HOM05D003333 ORTHO05D003836 6.5e-10 68.6 170 44.7
Medtr4g130620 Medicago truncatula HOM05D003333 ORTHO05D003836 6.5e-10 68.6 170 45.3
MSTRG.6153 Avicennia marina HOM05D003333 ORTHO05D003836 8.5e-10 68.2 170 45.9
CsaV3_2G007600 Cucumis sativus L. HOM05D003333 ORTHO05D003836 1.1e-09 67.8 170 47.1
MELO3C004126.2 Cucumis melo HOM05D003333 ORTHO05D003836 1.4e-09 67.4 170 47.1
VMungo1215G1683 Vigna mungo HOM05D003333 ORTHO05D003836 1.4e-09 67.4 170 45.3
A03p60210 Brassica napus HOM05D003333 ORTHO05D003836 1.9e-09 67.0 172 39.5
BcaNung00576 Brassica carinata HOM05D003333 ORTHO05D003836 2.5e-09 66.6 172 37.2
C07p58110 Brassica napus HOM05D003333 ORTHO05D003836 2.5e-09 66.6 172 37.2
Glyma.02G205200 Glycine max HOM05D003333 ORTHO05D003836 2.5e-09 66.6 170 45.3
Sp7g28520 Schrenkiella parvula HOM05D003333 ORTHO05D003836 2.5e-09 66.6 168 45.8
CiPaw.15G166600 Carya illinoinensis HOM05D003333 ORTHO05D003836 3.2e-09 66.2 171 47.4
AUR62028344 Chenopodium quinoa HOM05D003333 ORTHO05D003836 3.2e-09 66.2 165 43.0
Dinv41364 Davidia involucrata HOM05D003333 ORTHO05D003836 3.2e-09 66.2 170 45.3
TPR.G24850 Trifolium pratense HOM05D003333 ORTHO05D003836 3.2e-09 66.2 162 43.8
THA.LOC104811832 Tarenaya hassleriana HOM05D003333 ORTHO05D003836 4.2e-09 65.9 166 42.8
PSO541G3342 Papaver somniferum HOM05D003333 ORTHO05D003836 7.2e-09 65.1 167 44.9
TPR.G5421 Trifolium pratense HOM05D003333 ORTHO05D003836 9.4e-09 64.7 76 44.7
Aa31LG2G19800 Aethionema arabicum HOM05D003333 ORTHO05D003836 1.2e-08 64.3 159 50.9
Lj4g0011279 Lotus japonicus HOM05D003333 ORTHO05D003836 1.2e-08 64.3 170 44.7
BolC7t46269H Brassica oleracea HOM05D003333 ORTHO05D003836 2.1e-08 63.5 147 30.6
Oeu021312.1 Olea europaea HOM05D003333 ORTHO05D003836 2.1e-08 63.5 170 42.9
BcaB03g12653 Brassica carinata HOM05D003333 ORTHO05D003836 2.7e-08 63.2 169 29.6
Nn8g39960 Nelumbo nucifera HOM05D003333 ORTHO05D003836 2.7e-08 63.2 170 45.3
THA.LOC104803544 Tarenaya hassleriana HOM05D003333 ORTHO05D003836 2.7e-08 63.2 170 45.3
BcaB05g24930 Brassica carinata HOM05D003333 ORTHO05D003836 3.6e-08 62.8 161 29.2
Lalb_Chr13g0300781 Lupinus albus HOM05D003333 ORTHO05D003836 3.6e-08 62.8 170 44.7
EL10Ac8g18939 Beta vulgaris HOM05D003333 ORTHO05D003836 7.9e-08 61.6 162 40.7
arahy.Tifrunner.gnm1.ann1.LQ9XAK Arachis hypogaea HOM05D003333 ORTHO05D003836 1.0e-07 61.2 162 42.0
Hund08925 Selenicereus undatus HOM05D003333 ORTHO05D003836 1.0e-07 61.2 170 42.4
AUR62025341 Chenopodium quinoa HOM05D003333 ORTHO05D003836 1.4e-07 60.8 170 43.5
arahy.Tifrunner.gnm1.ann1.GH9EZK Arachis hypogaea HOM05D003333 ORTHO05D003836 1.8e-07 60.5 170 44.1
Sp7g28530 Schrenkiella parvula HOM05D003333 ORTHO05D003836 2.3e-07 60.1 166 28.3
Thhalv10014217m.g Eutrema salsugineum HOM05D003333 ORTHO05D003836 3.0e-07 59.7 170 42.4
Nitab4.5_0002320g0010 Nicotiana tabacum HOM05D003333 ORTHO05D003836 3.0e-07 59.7 170 43.5
Ah.14g084600 Amaranthus hybridus HOM05D003333 ORTHO05D003836 5.1e-07 58.9 170 41.8
Nitab4.5_0002724g0090 Nicotiana tabacum HOM05D003333 ORTHO05D003836 6.7e-07 58.5 170 43.5
Oeu021319.1 Olea europaea HOM05D003333 ORTHO05D003836 6.7e-07 58.5 170 43.5
Aa31LG2G19860 Aethionema arabicum HOM05D003333 ORTHO05D003836 8.8e-07 58.2 159 47.2
Peaxi162Scf00267g00510 Petunia axillaris HOM05D003333 ORTHO05D003836 8.8e-07 58.2 180 38.9
PGR142G2767 Punica granatum HOM05D003333 ORTHO05D003836 8.8e-07 58.2 170 42.9
Sc08g0009270 Simmondsia chinensis HOM05D003333 ORTHO05D003836 1.1e-06 57.8 170 43.5
BcaNung00575 Brassica carinata HOM05D003333 ORTHO05D003836 1.5e-06 57.4 165 43.6
Ah.14g084580 Amaranthus hybridus HOM05D003333 ORTHO05D003836 2.0e-06 57.0 169 42.6
Cfa020808 Carpinus fangiana HOM05D003333 ORTHO05D003836 2.0e-06 57.0 170 42.4
BcaNung04559 Brassica carinata HOM05D003333 ORTHO05D003836 2.6e-06 56.6 39 61.5
BcaNung04560 Brassica carinata HOM05D003333 ORTHO05D003836 3.3e-06 56.2 170 44.1
CDE02G3474 Ceratophyllum demersum HOM05D003333 ORTHO05D003836 3.3e-06 56.2 39 59.0
AL7G21500 Arabidopsis lyrata HOM05D003333 ORTHO05D003836 4.4e-06 55.8 174 45.4
CARHR238520 Cardamine hirsuta HOM05D003333 ORTHO05D003836 5.7e-06 55.5 169 27.8
Thhalv10014209m.g Eutrema salsugineum HOM05D003333 ORTHO05D003836 7.4e-06 55.1 171 41.5
FAN04G0684 Fragaria x ananassa HOM05D003333 ORTHO05D003836 9.7e-06 54.7 30 83.3


User provided reference genes

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