Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g25890 Fragaria vesca HOM05D006287 ORTHO05D008192 1.3e-141 508.1 437 100.0
FAN18G3351 Fragaria x ananassa HOM05D006287 ORTHO05D008192 1.3e-141 508.1 437 100.0
RcHm_v2.0_Chr7g0216391 Rosa chinensis HOM05D006287 ORTHO05D008192 6.3e-56 223.4 454 71.6
FAN08G1130 Fragaria x ananassa HOM05D006287 ORTHO05D008192 7.0e-55 219.9 143 95.1
Prupe.6G275900 Prunus persica HOM05D006287 ORTHO05D008192 1.1e-36 159.5 406 59.6
Haze_21571 Corylus avellana HOM05D006287 ORTHO05D008192 2.1e-27 128.6 143 51.0
CSS0042508 Camellia sinensis var. sinensis HOM05D006287 ORTHO05D008192 2.8e-27 128.3 408 33.8
Ciclev10010816m.g Citrus clementina HOM05D006287 ORTHO05D008192 2.8e-27 128.3 158 49.4
MD04G1151000 Malus domestica HOM05D006287 ORTHO05D008192 6.1e-27 127.1 359 60.4
CiPaw.06G059600 Carya illinoinensis HOM05D006287 ORTHO05D008192 3.0e-26 124.8 143 49.7
BcaNung04649 Brassica carinata HOM05D006287 ORTHO05D008192 2.9e-24 118.2 416 28.8
VMungo0331G1641 Vigna mungo HOM05D006287 ORTHO05D008192 1.1e-23 116.3 158 45.6
TPR.G5606 Trifolium pratense HOM05D006287 ORTHO05D008192 1.4e-23 115.9 419 37.5
QL05p049822 Quercus lobata HOM05D006287 ORTHO05D008192 2.4e-23 115.2 133 50.4
MSTRG.25851 Avicennia marina HOM05D006287 ORTHO05D008192 7.0e-23 113.6 409 31.5
CSS0048694 Camellia sinensis var. sinensis HOM05D006287 ORTHO05D008192 7.0e-23 113.6 155 41.3
QL08p000602 Quercus lobata HOM05D006287 ORTHO05D008192 9.2e-23 113.2 133 51.1
Cc11_g01810 Coffea canephora HOM05D006287 ORTHO05D008192 1.6e-22 112.5 171 42.1
CANSAT11G2472 Cannabis sativa HOM05D006287 ORTHO05D008192 4.6e-22 110.9 166 39.2
Cpa.g.sc1.269 Carica papaya HOM05D006287 ORTHO05D008192 7.8e-22 110.2 134 46.3
TWI63G1321 Tripterygium wilfordii HOM05D006287 ORTHO05D008192 1.3e-21 109.4 431 59.4
GSVIVG01035807001 Vitis vinifera HOM05D006287 ORTHO05D008192 1.3e-21 109.4 146 42.5
Duzib168G0154 Durio zibethinus HOM05D006287 ORTHO05D008192 2.9e-21 108.2 155 41.3
Oeu008766.1 Olea europaea HOM05D006287 ORTHO05D008192 6.6e-21 107.1 420 31.4
Potri.006G250700 Populus trichocarpa HOM05D006287 ORTHO05D008192 6.6e-21 107.1 425 59.5
Thecc.09G149000 Theobroma cacao HOM05D006287 ORTHO05D008192 1.5e-20 105.9 143 42.7
Glyma.07G068500 Glycine max HOM05D006287 ORTHO05D008192 2.5e-20 105.1 137 45.3
Sabra06G0196000 Salix brachista HOM05D001686 ORTHO05D008192 2.5e-20 105.1 436 58.0
Phvul.009G090400 Phaseolus vulgaris HOM05D006287 ORTHO05D008192 4.3e-20 104.4 132 46.2
Atru.chr7.2375 Acer truncatum HOM05D006287 ORTHO05D008192 9.5e-20 103.2 145 42.8
COL.COLO4_23984 Corchorus olitorius HOM05D006287 ORTHO05D008192 9.5e-20 103.2 121 43.8
Lalb_Chr07g0185941 Lupinus albus HOM05D006287 ORTHO05D008192 9.5e-20 103.2 148 41.9
Duzib150G0458 Durio zibethinus HOM05D006287 ORTHO05D008192 4.7e-19 100.9 150 42.7
Dinv11617 Davidia involucrata HOM05D006287 ORTHO05D008192 1.4e-18 99.4 144 44.4
C08p30210 Brassica napus HOM05D006287 ORTHO05D008192 1.8e-18 99.0 418 29.2
Psat7g237040 Pisum sativum HOM05D006287 ORTHO05D008192 5.2e-18 97.4 166 39.8
RcHm_v2.0_Chr6g0264781 Rosa chinensis HOM05D006287 ORTHO05D008192 5.2e-18 97.4 97 55.7
Oeu030203.1 Olea europaea HOM05D006287 ORTHO05D000003 6.8e-18 97.1 137 36.5
Actinidia15687 Actinidia chinensis HOM05D006287 ORTHO05D008192 8.9e-18 96.7 133 41.4
Lj7C718G17 Lonicera japonica HOM05D006287 ORTHO05D008192 1.5e-17 95.9 133 45.1
BolC8t50627H Brassica oleracea HOM05D006287 ORTHO05D008192 2.0e-17 95.5 418 28.9
MD12G1164900 Malus domestica HOM05D006287 ORTHO05D008192 2.6e-17 95.1 94 53.2
Ca_26550_v3 Cicer arietinum L. HOM05D006287 ORTHO05D008192 3.4e-17 94.7 124 45.2
RcHm_v2.0_Chr4g0410561 Rosa chinensis HOM05D006287 ORTHO05D008192 5.8e-17 94.0 50 84.0
BraA09t40252Z Brassica rapa HOM05D006287 ORTHO05D008192 9.8e-17 93.2 166 36.7
CAN.G98.23 Capsicum annuum HOM05D006287 ORTHO05D008192 1.3e-16 92.8 144 37.5
Nitab4.5_0001669g0010 Nicotiana tabacum HOM05D006287 ORTHO05D008192 3.7e-16 91.3 144 36.1
PGR142G2973 Punica granatum HOM05D006287 ORTHO05D008192 3.7e-16 91.3 139 36.0
SGA_v2.0_scaffold22G09931 Striga asiatica HOM05D006287 ORTHO05D008192 3.7e-16 91.3 432 28.5
Oeu032501.2 Olea europaea HOM05D006287 ORTHO05D008192 4.9e-16 90.9 155 38.7
Aa31sc33G30 Aethionema arabicum HOM05D006287 ORTHO05D008192 8.3e-16 90.1 138 37.7
A09p47970 Brassica napus HOM05D006287 ORTHO05D008192 8.3e-16 90.1 150 38.7
DCAR_006447 Daucus carota HOM05D006287 ORTHO05D008192 1.1e-15 89.7 138 41.3
Gorai.011G097400 Gossypium raimondii HOM05D006287 ORTHO05D008192 1.4e-15 89.4 134 41.0
arahy.Tifrunner.gnm1.ann1.VPFI8Q Arachis hypogaea HOM05D006287 ORTHO05D008192 1.9e-15 89.0 128 40.6
Eucgr.I01690 Eucalyptus grandis HOM05D006287 ORTHO05D008192 3.2e-15 88.2 159 37.1
THA.LOC104824237 Tarenaya hassleriana HOM05D006287 ORTHO05D008192 4.1e-15 87.8 141 38.3
Hma1.2p1_0007F.1_g005110 Hydrangea macrophylla HOM05D006287 ORTHO05D008192 5.4e-15 87.4 143 36.4
Nitab4.5_0000151g0190 Nicotiana tabacum HOM05D006287 ORTHO05D008192 5.4e-15 87.4 144 34.7
PGSC0003DMG400023145 Solanum tuberosum HOM05D006287 ORTHO05D008192 7.0e-15 87.0 144 34.7
BcaB01g00140 Brassica carinata HOM05D006287 ORTHO05D008192 9.2e-15 86.7 152 38.2
LjContig00081g0002723 Lotus japonicus HOM05D006287 ORTHO05D008192 1.6e-14 85.9 149 40.9
MSTRG.11775 Avicennia marina HOM05D006287 ORTHO05D008192 4.6e-14 84.3 143 36.4
Sed0018262 Sechium edule HOM05D006287 ORTHO05D008192 4.6e-14 84.3 145 35.2
Sopen08g021010 Solanum pennellii HOM05D006287 ORTHO05D008192 1.3e-13 82.8 144 32.6
ClCG02G013330 Citrullus lanatus HOM05D006287 ORTHO05D008192 1.7e-13 82.4 128 37.5
Zm00001eb161890 Zea mays HOM05D006287 ORTHO05D000003 2.3e-13 82.0 140 39.3
HanXRQChr02g0050751 Helianthus annuus HOM05D006287 ORTHO05D008192 3.0e-13 81.6 153 38.6
Solyc08g067060.2 Solanum lycopersicum HOM05D006287 ORTHO05D008192 3.0e-13 81.6 144 32.6
Thhalv10010921m.g Eutrema salsugineum HOM05D006287 ORTHO05D008192 8.6e-13 80.1 142 37.3
Nn3g20345 Nelumbo nucifera HOM05D006287 ORTHO05D008192 8.6e-13 80.1 144 36.1
CARHR164980 Cardamine hirsuta HOM05D006287 ORTHO05D008192 1.5e-12 79.3 159 35.2
Medtr4g076540 Medicago truncatula HOM05D006287 ORTHO05D008192 1.9e-12 79.0 135 35.6
Aqoxy7G02057 Aquilegia oxysepala HOM05D006287 ORTHO05D008192 5.6e-12 77.4 61 54.1
AUR62015978 Chenopodium quinoa HOM05D006287 ORTHO05D008192 5.6e-12 77.4 436 24.3
Sc25g0000480 Simmondsia chinensis HOM05D006287 ORTHO05D008192 5.6e-12 77.4 146 37.7
TPR.G5411 Trifolium pratense HOM05D008207 ORTHO05D010373 1.2e-11 76.3 133 38.3
MELO3C020947.2 Cucumis melo HOM05D006287 ORTHO05D008192 2.1e-11 75.5 128 37.5
AT2G39230 Arabidopsis thaliana HOM05D006287 ORTHO05D008192 6.2e-11 73.9 163 35.0
Nn5g27729 Nelumbo nucifera HOM05D006287 ORTHO05D008192 6.2e-11 73.9 144 35.4
AL5G36090 Arabidopsis lyrata HOM05D006287 ORTHO05D008192 8.1e-11 73.6 148 36.5
Sp4g21560 Schrenkiella parvula HOM05D006287 ORTHO05D008192 8.1e-11 73.6 139 36.0
SpUn0018_0110 Schrenkiella parvula HOM05D006287 ORTHO05D008192 8.1e-11 73.6 139 36.0
Peaxi162Scf00341g00062 Petunia axillaris HOM05D006287 ORTHO05D008192 1.1e-10 73.2 133 33.8
Carub.0005s2160 Capsella rubella HOM05D006287 ORTHO05D008192 1.4e-10 72.8 150 35.3
Sed0001816 Sechium edule HOM05D006287 ORTHO05D008192 1.8e-10 72.4 131 37.4
AL4G36540 Arabidopsis lyrata HOM05D006287 ORTHO05D008192 3.1e-10 71.6 156 34.6
Carub.0004s2128 Capsella rubella HOM05D006287 ORTHO05D008192 3.1e-10 71.6 131 36.6
AUR62021185 Chenopodium quinoa HOM05D006287 ORTHO05D008192 5.2e-10 70.9 138 29.0
CsaV3_2G017510 Cucumis sativus L. HOM05D006287 ORTHO05D008192 6.8e-10 70.5 128 35.9
Hund04746 Selenicereus undatus HOM05D006287 ORTHO05D008192 8.9e-10 70.1 70 41.4
AT3G54980 Arabidopsis thaliana HOM05D006287 ORTHO05D008192 1.2e-09 69.7 148 35.1
Nitab4.5_0008089g0010 Nicotiana tabacum HOM05D006287 ORTHO05D008192 1.2e-09 69.7 89 36.0
BcaNung04644 Brassica carinata HOM05D006287 ORTHO05D008192 5.8e-09 67.4 114 36.8
BcaNung04646 Brassica carinata HOM05D006287 ORTHO05D008192 5.8e-09 67.4 71 38.0
THA.LOC104809984 Tarenaya hassleriana HOM05D006287 ORTHO05D008192 7.5e-09 67.0 131 31.3
Thhalv10017602m.g Eutrema salsugineum HOM05D006287 ORTHO05D008192 9.8e-09 66.6 139 33.8
Lsat_1_v5_gn_6_22161 Lactuca sativa HOM05D006287 ORTHO05D008192 2.2e-08 65.5 137 32.8
MBI08_g04815_MAGBIO Magnolia biondii HOM05D006287 ORTHO05D008192 3.7e-08 64.7 144 30.6
AUR62021186 Chenopodium quinoa HOM05D006287 ORTHO05D008192 6.4e-08 63.9 143 48.3
AagrBONN_evm.TU.Sc2ySwM_228.5321 Anthoceros agrestis HOM05D000001 ORTHO05D000003 8.3e-08 63.5 143 26.6
EL10Ac3g05636 Beta vulgaris HOM05D006287 ORTHO05D008192 1.1e-07 63.2 142 50.7
CDE03G0083 Ceratophyllum demersum HOM05D006287 ORTHO05D008192 1.1e-07 63.2 143 25.9
AUR62015977 Chenopodium quinoa HOM05D006287 ORTHO05D008192 1.9e-07 62.4 66 43.9
AagrBONN_evm.TU.Sc2ySwM_344.3513 Anthoceros agrestis HOM05D000001 ORTHO05D000003 2.4e-07 62.0 143 24.5
MELO3C024960.2 Cucumis melo HOM05D000001 ORTHO05D000003 7.1e-07 60.5 138 26.8
AagrBONN_evm.TU.Sc2ySwM_362.237 Anthoceros agrestis HOM05D000001 ORTHO05D000003 9.2e-07 60.1 141 26.2
CAN.G1030.29 Capsicum annuum HOM05D006287 ORTHO05D008192 9.2e-07 60.1 76 35.5
ECA233G4604 Erigeron canadensis HOM05D005914 ORTHO05D007361 1.2e-06 59.7 54 44.4
HPP92_023171 Vanilla planifolia HOM05D006287 ORTHO05D008192 1.2e-06 59.7 144 30.6
Lsat_1_v5_gn_7_22621 Lactuca sativa HOM05D000001 ORTHO05D000003 1.6e-06 59.3 143 28.0
GSVIVG01022230001 Vitis vinifera HOM05D000001 ORTHO05D000003 1.6e-06 59.3 143 24.5
AagrBONN_evm.TU.Sc2ySwM_344.4747 Anthoceros agrestis HOM05D000001 ORTHO05D000003 2.7e-06 58.5 147 29.3
Gohir.A10G099700 Gossypium hirsutum HOM05D006287 ORTHO05D008192 2.7e-06 58.5 52 51.9
ATR1127G078 Amborella trichopoda HOM05D000001 ORTHO05D009595 4.6e-06 57.8 143 35.0
Aqoxy4G02149 Aquilegia oxysepala HOM05D000001 ORTHO05D000003 4.6e-06 57.8 143 24.5
Sed0011850 Sechium edule HOM05D000001 ORTHO05D009335 4.6e-06 57.8 137 24.8
ATR0706G018 Amborella trichopoda HOM05D000001 ORTHO05D000003 6.0e-06 57.4 139 24.5
AagrBONN_evm.TU.Sc2ySwM_228.3746 Anthoceros agrestis HOM05D000001 ORTHO05D000003 6.0e-06 57.4 147 27.9
AagrBONN_evm.TU.Sc2ySwM_362.1752 Anthoceros agrestis HOM05D000001 ORTHO05D000003 6.0e-06 57.4 147 27.9
Carub.0007s0109 Capsella rubella HOM05D000001 ORTHO05D000003 6.0e-06 57.4 143 25.9
ATR0782G042 Amborella trichopoda HOM05D006287 ORTHO05D008192 7.8e-06 57.0 141 30.5
FAN28G0652 Fragaria x ananassa HOM05D000001 ORTHO05D000003 7.8e-06 57.0 143 23.1
Peaxi162Scf00092g00003 Petunia axillaris HOM05D000001 ORTHO05D000003 7.8e-06 57.0 137 28.5


User provided reference genes

Program Settings