Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g23630 Fragaria vesca HOM05D005966 ORTHO05D007584 0.0e+00 1308.5 656 100.0
FAN18G1628 Fragaria x ananassa HOM05D005966 ORTHO05D007584 0.0e+00 1299.6 652 99.7
FAN13G2896 Fragaria x ananassa HOM05D005966 ORTHO05D007584 0.0e+00 1293.9 656 99.1
FAN18G2691 Fragaria x ananassa HOM05D005966 ORTHO05D007584 0.0e+00 1253.8 629 99.8
RcHm_v2.0_Chr7g0212931 Rosa chinensis HOM05D005966 ORTHO05D007584 0.0e+00 1250.3 657 95.4
Prupe.7G240500 Prunus persica HOM05D005966 ORTHO05D007584 0.0e+00 1083.2 657 83.6
MD15G1175600 Malus domestica HOM05D005966 ORTHO05D007584 1.8e-311 1072.0 658 81.8
CiPaw.04G170200 Carya illinoinensis HOM05D005966 ORTHO05D007584 1.6e-283 979.2 653 76.3
Haze_25609 Corylus avellana HOM05D005966 ORTHO05D007584 1.8e-279 965.7 671 73.2
Cfa003353 Carpinus fangiana HOM05D005966 ORTHO05D007584 9.3e-276 953.4 660 73.8
GSVIVG01015509001 Vitis vinifera HOM05D005966 ORTHO05D007584 6.7e-274 947.2 660 72.1
Dinv36541 Davidia involucrata HOM05D005966 ORTHO05D007584 2.6e-270 935.3 661 71.6
Atru.chr7.1212 Acer truncatum HOM05D005966 ORTHO05D007584 5.0e-269 931.0 659 71.6
Duzib187G1826 Durio zibethinus HOM05D005966 ORTHO05D007584 4.2e-268 927.9 664 71.1
CANSAT11G2564 Cannabis sativa HOM05D005966 ORTHO05D007584 2.8e-264 915.2 660 71.7
Ciclev10007689m.g Citrus clementina HOM05D005966 ORTHO05D007584 6.3e-264 914.1 660 70.0
QL02p087915 Quercus lobata HOM05D005966 ORTHO05D007584 7.7e-262 907.1 912 54.9
Thecc.09G123800 Theobroma cacao HOM05D005966 ORTHO05D007584 1.4e-260 902.9 666 69.8
Hma1.2p1_0018F.1_g012590 Hydrangea macrophylla HOM05D005966 ORTHO05D007584 3.9e-258 894.8 664 69.0
vmacro06121 Vaccinium macrocarpon HOM05D005966 ORTHO05D007584 2.6e-257 892.1 681 67.8
vmacro06181 Vaccinium macrocarpon HOM05D005966 ORTHO05D007584 2.6e-257 892.1 681 67.8
Potri.015G057100 Populus trichocarpa HOM05D005966 ORTHO05D007584 1.7e-256 889.4 666 67.6
Gorai.009G019100 Gossypium raimondii HOM05D005966 ORTHO05D007584 5.5e-252 874.4 670 67.6
Gohir.A05G017800 Gossypium hirsutum HOM05D005966 ORTHO05D007584 9.4e-252 873.6 670 67.3
Gohir.A07G035000 Gossypium hirsutum HOM05D005966 ORTHO05D007584 9.4e-252 873.6 664 67.3
Nn2g12002 Nelumbo nucifera HOM05D005966 ORTHO05D007584 3.6e-251 871.7 663 67.4
Eucgr.C04186 Eucalyptus grandis HOM05D005966 ORTHO05D007584 6.7e-250 867.5 657 67.9
ClCG08G000940 Citrullus lanatus HOM05D005966 ORTHO05D007584 8.8e-250 867.1 661 68.2
CsaV3_5G040100 Cucumis sativus L. HOM05D005966 ORTHO05D007584 2.6e-249 865.5 661 67.5
Gorai.001G041100 Gossypium raimondii HOM05D005966 ORTHO05D007584 3.3e-249 865.1 664 66.9
Actinidia07431 Actinidia chinensis HOM05D005966 ORTHO05D007584 7.4e-249 864.0 664 68.4
MELO3C022187.2 Cucumis melo HOM05D005966 ORTHO05D007584 4.1e-247 858.2 661 67.3
PGR102G3358 Punica granatum HOM05D005966 ORTHO05D007584 5.9e-246 854.4 653 67.7
Sabra15G0082400 Salix brachista HOM05D005966 ORTHO05D007584 2.9e-245 852.0 666 65.3
Lj7C631G5 Lonicera japonica HOM05D005966 ORTHO05D007584 1.9e-244 849.4 759 61.0
CSS0033485 Camellia sinensis var. sinensis HOM05D005966 ORTHO05D007584 5.5e-244 847.8 673 66.6
Sed0002176 Sechium edule HOM05D005966 ORTHO05D007584 9.4e-244 847.0 660 67.4
Cc06_g08730 Coffea canephora HOM05D005966 ORTHO05D007584 1.0e-242 843.6 670 65.8
DCAR_014873 Daucus carota HOM05D005966 ORTHO05D007584 2.6e-241 839.0 664 64.8
Glyma.05G009700 Glycine max HOM05D005966 ORTHO05D007584 9.1e-239 830.5 657 65.9
Actinidia26399 Actinidia chinensis HOM05D005966 ORTHO05D007584 2.7e-238 828.9 688 65.1
Phvul.003G161800 Phaseolus vulgaris HOM05D005966 ORTHO05D007584 2.9e-237 825.5 662 65.3
TAR636G0633 Trochodendron aralioides HOM05D005966 ORTHO05D007584 3.2e-236 822.0 635 67.4
VMungo1215G0752 Vigna mungo HOM05D005966 ORTHO05D007584 3.2e-236 822.0 660 65.2
CAN.G377.10 Capsicum annuum HOM05D005966 ORTHO05D007584 1.2e-235 820.1 659 64.9
Manes.06G049700 Manihot esculenta HOM05D005966 ORTHO05D007584 1.2e-235 820.1 663 64.6
Lalb_Chr07g0178861 Lupinus albus HOM05D005966 ORTHO05D007584 4.7e-235 818.1 659 64.2
Glyma.17G117600 Glycine max HOM05D005966 ORTHO05D007584 1.0e-234 817.0 658 65.0
Sopen12g002600 Solanum pennellii HOM05D005966 ORTHO05D007584 1.8e-234 816.2 663 64.6
Solyc12g006650.2 Solanum lycopersicum HOM05D005966 ORTHO05D007584 3.0e-234 815.5 663 64.4
PGSC0003DMG400020667 Solanum tuberosum HOM05D005966 ORTHO05D007584 5.2e-234 814.7 663 64.4
Nitab4.5_0007523g0010 Nicotiana tabacum HOM05D005966 ORTHO05D007584 6.8e-234 814.3 666 64.9
Lj4g0014642 Lotus japonicus HOM05D005966 ORTHO05D007584 3.4e-233 812.0 654 65.0
PSO170G3915 Papaver somniferum HOM05D005966 ORTHO05D007584 3.4e-233 812.0 661 64.4
PSO455G0207 Papaver somniferum HOM05D005966 ORTHO05D007584 3.4e-233 812.0 661 64.4
Rhsim03G0247300 Rhododendron simsii HOM05D005966 ORTHO05D007584 3.4e-233 812.0 584 70.9
Nitab4.5_0010819g0010 Nicotiana tabacum HOM05D005966 ORTHO05D007584 3.7e-232 808.5 669 64.1
MD02G1034800 Malus domestica HOM05D005966 ORTHO05D007584 4.1e-231 805.1 684 65.4
TPR.G10691 Trifolium pratense HOM05D005966 ORTHO05D007584 1.6e-230 803.1 659 63.1
arahy.Tifrunner.gnm1.ann1.QB31BF Arachis hypogaea HOM05D005966 ORTHO05D007584 7.7e-230 800.8 661 63.8
Aqoxy5G00491 Aquilegia oxysepala HOM05D005966 ORTHO05D007584 1.9e-228 796.2 662 62.5
Gohir.D05G018700 Gossypium hirsutum HOM05D005966 ORTHO05D007584 1.9e-228 796.2 670 63.0
Gohir.D07G039000 Gossypium hirsutum HOM05D005966 ORTHO05D007584 3.3e-228 795.4 664 62.7
Ca_21691_v3 Cicer arietinum L. HOM05D005966 ORTHO05D007584 1.0e-226 790.4 656 63.9
arahy.Tifrunner.gnm1.ann1.Z0FLIL Arachis hypogaea HOM05D005966 ORTHO05D007584 1.4e-226 790.0 673 62.7
Medtr4g114100 Medicago truncatula HOM05D005966 ORTHO05D007584 3.4e-225 785.4 658 62.9
MSTRG.14036 Avicennia marina HOM05D005966 ORTHO05D007584 3.1e-223 778.9 667 61.6
Peaxi162Scf00984g00027 Petunia axillaris HOM05D005966 ORTHO05D007584 9.2e-223 777.3 633 64.6
Lsat_1_v5_gn_8_59020 Lactuca sativa HOM05D005966 ORTHO05D007584 6.6e-221 771.2 676 60.7
ECA236G0249 Erigeron canadensis HOM05D005966 ORTHO05D007584 4.3e-220 768.5 666 61.0
Psat4g039400 Pisum sativum HOM05D005966 ORTHO05D007584 4.3e-220 768.5 657 60.9
SGA_v2.0_scaffold163G38051 Striga asiatica HOM05D005966 ORTHO05D007584 5.6e-220 768.1 669 61.1
Oeu018459.1 Olea europaea HOM05D005966 ORTHO05D007584 4.0e-218 761.9 649 61.8
HanXRQChr04g0104201 Helianthus annuus HOM05D005966 ORTHO05D007584 5.2e-218 761.5 658 59.9
SalBow1G1471 Salvia bowleyana HOM05D005966 ORTHO05D007584 6.0e-214 748.0 744 54.6
Migut.E01544 Erythranthe guttata HOM05D005966 ORTHO05D007584 2.5e-212 742.7 664 59.8
Oeu021589.1 Olea europaea HOM05D005966 ORTHO05D007584 1.2e-211 740.3 647 60.1
Aa31LG1G14440 Aethionema arabicum HOM05D005966 ORTHO05D007584 8.9e-210 734.2 659 58.4
A03p09900 Brassica napus HOM05D005966 ORTHO05D007584 2.0e-209 733.0 662 59.2
C03p11480 Brassica napus HOM05D005966 ORTHO05D007584 3.4e-209 732.3 662 59.1
Thhalv10012923m.g Eutrema salsugineum HOM05D005966 ORTHO05D007584 5.8e-209 731.5 661 58.7
Sp6g24230 Schrenkiella parvula HOM05D005966 ORTHO05D007584 1.3e-208 730.3 663 58.7
BolC3t13620H Brassica oleracea HOM05D005966 ORTHO05D007584 9.2e-207 724.2 663 58.8
Hund26492 Selenicereus undatus HOM05D005966 ORTHO05D007584 1.7e-205 719.9 658 57.6
AUR62033484 Chenopodium quinoa HOM05D005966 ORTHO05D007584 3.9e-205 718.8 661 58.1
CARHR192650 Cardamine hirsuta HOM05D005966 ORTHO05D007584 5.1e-205 718.4 663 57.9
Carub.0006s1857 Capsella rubella HOM05D005966 ORTHO05D007584 3.3e-204 715.7 663 58.2
AUR62011094 Chenopodium quinoa HOM05D005966 ORTHO05D007584 8.1e-203 711.1 661 57.8
BraA03t10303Z Brassica rapa HOM05D005966 ORTHO05D007584 1.8e-202 709.9 662 57.7
THA.LOC104799647 Tarenaya hassleriana HOM05D005966 ORTHO05D007584 1.2e-201 707.2 659 58.3
AL6G31730 Arabidopsis lyrata HOM05D005966 ORTHO05D007584 1.5e-201 706.8 663 57.5
AT5G20170 Arabidopsis thaliana HOM05D005966 ORTHO05D007584 2.6e-201 706.1 663 57.2
Sabra15G0082900 Salix brachista HOM05D005966 ORTHO05D007584 5.8e-201 704.9 720 54.4
EL10Ac8g18623 Beta vulgaris HOM05D005966 ORTHO05D007584 1.3e-197 693.7 659 56.6
HPP92_009844 Vanilla planifolia HOM05D005966 ORTHO05D007584 1.9e-191 673.3 667 54.6
ATR1156G034 Amborella trichopoda HOM05D005966 ORTHO05D007584 6.9e-186 654.8 667 52.6
Ah.14g080180 Amaranthus hybridus HOM05D005966 ORTHO05D007584 5.8e-185 651.7 626 55.9
Cpa.g.sc75.51 Carica papaya HOM05D005966 ORTHO05D007584 2.2e-176 623.2 490 64.9
Os12g0638600 Oryza sativa ssp. japonica HOM05D005966 ORTHO05D007584 1.8e-170 603.6 665 50.2
Zm00001eb207940 Zea mays HOM05D005966 ORTHO05D007584 9.0e-162 574.7 665 47.4
CDE01G0041 Ceratophyllum demersum HOM05D005966 ORTHO05D007584 4.5e-161 572.4 557 55.5
SEGI_37567 Sequoiadendron giganteum HOM05D005966 ORTHO05D007584 2.5e-159 566.6 705 45.1
Sc08g0006730 Simmondsia chinensis HOM05D005966 ORTHO05D007584 5.5e-151 538.9 526 54.8
unitig_578.g16582 Utricularia gibba HOM05D005966 ORTHO05D007584 9.7e-148 528.1 659 45.8
Zm00001eb334260 Zea mays HOM05D005966 ORTHO05D007584 9.7e-132 474.9 541 48.4
Glyma.14G007400 Glycine max HOM05D005966 ORTHO05D007584 5.9e-105 386.0 297 68.4
COL.COLO4_05778 Corchorus olitorius HOM05D005966 ORTHO05D007584 2.6e-92 344.0 386 51.8
Mapoly0010s0026 Marchantia polymorpha HOM05D005966 ORTHO05D007584 1.4e-90 338.2 717 33.5
SHI18656 Sapria himalayana HOM05D005966 ORTHO05D007584 1.6e-89 334.7 542 40.6
FAN08G0676 Fragaria x ananassa HOM05D005966 ORTHO05D007584 8.9e-85 318.9 164 100.0
Pp3c3_25450 Physcomitrium patens HOM05D005966 ORTHO05D007584 5.8e-84 316.2 671 33.2
SMO200G0046 Selaginella moellendorffii HOM05D005966 ORTHO05D007584 4.6e-73 280.0 646 29.1
TAR625G1387 Trochodendron aralioides HOM05D005966 ORTHO05D007584 1.8e-53 214.9 342 42.4
Sc08g0006740 Simmondsia chinensis HOM05D005966 ORTHO05D007584 6.2e-46 189.9 137 71.5
Dinv41526 Davidia involucrata HOM05D006513 ORTHO05D008150 5.3e-45 186.8 182 56.0
AagrBONN_evm.TU.Sc2ySwM_117.630 Anthoceros agrestis HOM05D005966 ORTHO05D007584 9.0e-45 186.0 474 31.4
SHI18657 Sapria himalayana HOM05D005966 ORTHO05D007584 3.4e-36 157.5 135 61.5
Cpa.g.sc75.52 Carica papaya HOM05D005966 ORTHO05D007584 1.3e-27 129.0 102 67.6
CBR_g48370 Chara braunii HOM05D005966 ORTHO05D000048 5.0e-27 127.1 365 31.0
Aqoxy7G02129 Aquilegia oxysepala HOM05D005966 ORTHO05D007584 5.1e-24 117.1 160 49.4
Hma1.2p1_0090F.1_g045710 Hydrangea macrophylla HOM05D005966 ORTHO05D007584 4.4e-23 114.0 110 50.9
COL.COLO4_05779 Corchorus olitorius HOM05D005966 ORTHO05D007584 7.7e-20 103.2 58 77.6
GSVIVG01027692001 Vitis vinifera HOM05D005966 ORTHO05D007584 1.8e-16 92.0 64 71.9
CAN.G925.3 Capsicum annuum HOM05D005966 ORTHO05D007584 5.2e-16 90.5 85 54.1
CAN.G1289.8 Capsicum annuum HOM05D005966 ORTHO05D007584 2.4e-13 81.6 54 66.7
Lsat_1_v5_gn_8_82580 Lactuca sativa HOM05D005966 ORTHO05D007584 7.7e-12 76.6 49 75.5
CDE11G0857 Ceratophyllum demersum HOM05D005966 ORTHO05D007584 1.0e-08 66.2 68 55.9
TAR626G0958 Trochodendron aralioides HOM05D005966 ORTHO05D007584 2.0e-07 62.0 37 81.1
TAR362G1246 Trochodendron aralioides HOM05D005966 ORTHO05D007584 3.4e-07 61.2 37 81.1
Pp3c19_8370 Physcomitrium patens HOM05D005966 ORTHO05D007584 1.7e-06 58.9 112 35.7
AUR62041250 Chenopodium quinoa HOM05D005966 ORTHO05D007584 8.3e-06 56.6 52 53.8


User provided reference genes

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