Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g20981 Fragaria vesca HOM05D005670 ORTHO05D007612 5.7e-172 607.4 300 100.0
FvH4_3g09410 Fragaria vesca HOM05D005670 ORTHO05D007612 4.0e-149 531.6 288 92.4
FAN11G1478 Fragaria x ananassa HOM05D005670 ORTHO05D007612 4.0e-149 531.6 288 92.4
FAN21G0121 Fragaria x ananassa HOM05D005670 ORTHO05D007612 1.4e-146 523.1 303 87.8
FAN16G2869 Fragaria x ananassa HOM05D005670 ORTHO05D007612 1.7e-144 516.2 303 87.1
RcHm_v2.0_Chr5g0008181 Rosa chinensis HOM05D005670 ORTHO05D007612 1.1e-143 513.5 288 91.0
Prupe.4G045000 Prunus persica HOM05D005670 ORTHO05D007612 4.9e-131 471.5 288 81.2
MD05G1314100 Malus domestica HOM05D005670 ORTHO05D007612 1.4e-130 469.9 288 81.6
QL05p039856 Quercus lobata HOM05D005670 ORTHO05D007612 3.5e-121 438.7 285 77.5
Haze_06486 Corylus avellana HOM05D005670 ORTHO05D007612 4.8e-118 428.3 285 74.4
CiPaw.09G058400 Carya illinoinensis HOM05D005670 ORTHO05D007612 6.9e-117 424.5 286 74.8
Ciclev10014972m.g Citrus clementina HOM05D005670 ORTHO05D007612 8.4e-115 417.5 285 71.6
Thecc.06G189700 Theobroma cacao HOM05D005670 ORTHO05D007612 1.0e-112 410.6 284 73.2
Manes.16G026300 Manihot esculenta HOM05D005670 ORTHO05D007612 2.3e-112 409.5 288 72.9
Gohir.A10G024800 Gossypium hirsutum HOM05D005670 ORTHO05D007612 3.9e-112 408.7 288 71.2
Gorai.011G026800 Gossypium raimondii HOM05D005670 ORTHO05D007612 6.7e-112 407.9 288 70.8
Potri.004G041800 Populus trichocarpa HOM05D005670 ORTHO05D007612 6.7e-112 407.9 289 71.6
Cpa.g.sc27.55 Carica papaya HOM05D005670 ORTHO05D007612 1.9e-111 406.4 288 70.5
Gohir.D10G025500 Gossypium hirsutum HOM05D005670 ORTHO05D007612 2.5e-111 406.0 288 70.5
TAR626G1957 Trochodendron aralioides HOM05D005670 ORTHO05D007612 2.5e-111 406.0 288 70.1
Sed0013715 Sechium edule HOM05D005670 ORTHO05D007612 4.3e-111 405.2 288 69.1
CsaV3_1G012190 Cucumis sativus L. HOM05D005670 ORTHO05D007612 1.6e-110 403.3 288 69.1
Atru.chr10.1904 Acer truncatum HOM05D005670 ORTHO05D007612 3.7e-110 402.1 285 71.6
ClCG03G005950 Citrullus lanatus HOM05D005670 ORTHO05D007612 8.2e-110 401.0 289 69.9
TWI38G1891 Tripterygium wilfordii HOM05D005670 ORTHO05D007612 8.2e-110 401.0 288 69.8
DCAR_004080 Daucus carota HOM05D005670 ORTHO05D007612 2.6e-108 396.0 288 68.1
PSO675G5775 Papaver somniferum HOM05D005670 ORTHO05D007612 4.5e-108 395.2 285 68.4
Dinv07547 Davidia involucrata HOM05D005670 ORTHO05D007612 1.3e-107 393.7 284 68.7
Sed0017986 Sechium edule HOM05D005670 ORTHO05D007612 5.0e-107 391.7 289 69.2
Nn1g06587 Nelumbo nucifera HOM05D005670 ORTHO05D007612 1.9e-106 389.8 290 68.3
Eucgr.E03319 Eucalyptus grandis HOM05D005670 ORTHO05D007612 1.2e-105 387.1 288 69.1
Lsat_1_v5_gn_7_18941 Lactuca sativa HOM05D005670 ORTHO05D007612 2.1e-105 386.3 290 68.3
PGR042G2793 Punica granatum HOM05D005670 ORTHO05D007612 2.1e-105 386.3 289 68.9
Lj1A1206G64 Lonicera japonica HOM05D005670 ORTHO05D007612 4.6e-105 385.2 291 66.0
CSS0005949 Camellia sinensis var. sinensis HOM05D005670 ORTHO05D007612 3.0e-104 382.5 288 68.4
COL.COLO4_31493 Corchorus olitorius HOM05D005670 ORTHO05D008858 3.9e-104 382.1 262 72.5
AT4G04955 Arabidopsis thaliana HOM05D005670 ORTHO05D007612 8.7e-104 380.9 287 68.6
Lj6g0007385 Lotus japonicus HOM05D005670 ORTHO05D007612 1.1e-103 380.6 293 66.2
THA.LOC104806286 Tarenaya hassleriana HOM05D005670 ORTHO05D007612 1.5e-103 380.2 288 68.1
Phvul.006G186800 Phaseolus vulgaris HOM05D005670 ORTHO05D007612 4.3e-103 378.6 296 63.2
Sc05g0007760 Simmondsia chinensis HOM05D005670 ORTHO05D007612 5.7e-103 378.3 284 66.5
Glyma.15G072900 Glycine max HOM05D005670 ORTHO05D007612 1.3e-102 377.1 296 62.5
Aqoxy1G02519 Aquilegia oxysepala HOM05D005670 ORTHO05D007612 2.2e-102 376.3 288 67.7
Aa31LG9G9510 Aethionema arabicum HOM05D005670 ORTHO05D007612 2.8e-102 375.9 286 68.5
TPR.G36745 Trifolium pratense HOM05D005670 ORTHO05D007612 2.8e-102 375.9 288 66.0
BcaC04g21352 Brassica carinata HOM05D005670 ORTHO05D007612 4.8e-102 375.2 287 67.6
C09p32840 Brassica napus HOM05D005670 ORTHO05D007612 4.8e-102 375.2 287 67.6
BolC9t56124H Brassica oleracea HOM05D005670 ORTHO05D007612 4.8e-102 375.2 287 67.6
AL6G48490 Arabidopsis lyrata HOM05D005670 ORTHO05D007612 6.3e-102 374.8 287 67.6
ECA236G2993 Erigeron canadensis HOM05D005670 ORTHO05D007612 6.3e-102 374.8 293 66.9
SGA_v2.0_scaffold22G09723 Striga asiatica HOM05D005670 ORTHO05D007612 8.2e-102 374.4 289 67.5
MSTRG.7329 Avicennia marina HOM05D005670 ORTHO05D007612 1.8e-101 373.2 289 67.5
BcaB01g01850 Brassica carinata HOM05D005670 ORTHO05D007612 1.8e-101 373.2 288 67.4
Glyma.13G240600 Glycine max HOM05D005670 ORTHO05D007612 1.8e-101 373.2 296 61.8
MD00G1095000 Malus domestica HOM05D005670 ORTHO05D007612 1.8e-101 373.2 228 81.6
Psat1g206560 Pisum sativum HOM05D005670 ORTHO05D007612 4.1e-101 372.1 296 62.8
VMungo0540G1652 Vigna mungo HOM05D005670 ORTHO05D007612 4.1e-101 372.1 296 61.8
Thhalv10028578m.g Eutrema salsugineum HOM05D005670 ORTHO05D007612 5.3e-101 371.7 287 67.6
A09p25930 Brassica napus HOM05D005670 ORTHO05D007612 6.9e-101 371.3 288 66.7
BraA09t38162Z Brassica rapa HOM05D005670 ORTHO05D007612 6.9e-101 371.3 288 66.7
Lalb_Chr15g0089871 Lupinus albus HOM05D005670 ORTHO05D007612 6.9e-101 371.3 295 63.1
Cc02_g13200 Coffea canephora HOM05D005670 ORTHO05D007612 9.0e-101 370.9 276 67.4
Glyma.13G240500 Glycine max HOM05D005670 ORTHO05D007612 9.0e-101 370.9 296 62.8
VMungo0540G1414 Vigna mungo HOM05D005670 ORTHO05D007612 1.2e-100 370.5 296 63.9
CARHR252570 Cardamine hirsuta HOM05D005670 ORTHO05D007612 1.5e-100 370.2 289 67.1
Sp6g04000 Schrenkiella parvula HOM05D005670 ORTHO05D007612 1.5e-100 370.2 288 67.0
Haze_05742 Corylus avellana HOM05D005670 ORTHO05D007612 2.6e-100 369.4 235 76.6
HanXRQChr04g0124101 Helianthus annuus HOM05D005670 ORTHO05D007612 2.6e-100 369.4 292 65.8
PGSC0003DMG400022386 Solanum tuberosum HOM05D005670 ORTHO05D007612 3.4e-100 369.0 288 66.3
Carub.0006s3289 Capsella rubella HOM05D005670 ORTHO05D007612 4.5e-100 368.6 290 66.6
Sopen02g023260 Solanum pennellii HOM05D005670 ORTHO05D007612 4.5e-100 368.6 288 66.0
THA.LOC104812854 Tarenaya hassleriana HOM05D005670 ORTHO05D007612 5.9e-100 368.2 288 65.6
Glyma.15G073000 Glycine max HOM05D005670 ORTHO05D007612 1.0e-99 367.5 296 62.2
CAN.G1164.15 Capsicum annuum HOM05D005670 ORTHO05D007612 2.2e-99 366.3 288 66.7
arahy.Tifrunner.gnm1.ann1.06VRVW Arachis hypogaea HOM05D005670 ORTHO05D007612 2.9e-99 365.9 301 60.1
arahy.Tifrunner.gnm1.ann1.RER6EK Arachis hypogaea HOM05D005670 ORTHO05D007612 2.9e-99 365.9 299 60.9
Phvul.006G186700 Phaseolus vulgaris HOM05D005670 ORTHO05D007612 2.9e-99 365.9 296 63.2
vmacro15902 Vaccinium macrocarpon HOM05D005670 ORTHO05D007612 2.9e-99 365.9 279 67.4
Solyc02g078400.3 Solanum lycopersicum HOM05D005670 ORTHO05D007612 3.8e-99 365.5 288 65.6
CDE09G0528 Ceratophyllum demersum HOM05D005670 ORTHO05D007612 6.5e-99 364.8 288 63.2
Medtr2g013060 Medicago truncatula HOM05D005670 ORTHO05D007612 8.5e-99 364.4 290 65.2
AUR62014803 Chenopodium quinoa HOM05D005670 ORTHO05D007612 7.2e-98 361.3 288 63.5
Nitab4.5_0005954g0030 Nicotiana tabacum HOM05D005670 ORTHO05D007612 7.2e-98 361.3 288 64.6
Hund23715 Selenicereus undatus HOM05D005670 ORTHO05D007612 7.2e-98 361.3 288 64.6
Migut.M01152 Erythranthe guttata HOM05D005670 ORTHO05D007612 1.6e-97 360.1 288 64.6
HPP92_014737 Vanilla planifolia HOM05D005670 ORTHO05D007612 7.9e-97 357.8 288 61.8
AUR62016994 Chenopodium quinoa HOM05D005670 ORTHO05D007612 1.0e-96 357.5 288 63.2
EL10Ac8g20366 Beta vulgaris HOM05D005670 ORTHO05D007612 5.7e-95 351.7 288 62.2
MBI18_g16998_MAGBIO Magnolia biondii HOM05D005670 ORTHO05D007612 9.7e-95 350.9 258 66.3
Peaxi162Scf00947g00005 Petunia axillaris HOM05D005670 ORTHO05D007612 7.7e-92 341.3 254 66.9
Sabra04G0025900 Salix brachista HOM05D005670 ORTHO05D007612 2.9e-91 339.3 289 63.3
CANSAT35G0124 Cannabis sativa HOM05D005670 ORTHO05D007612 1.9e-90 336.7 228 73.2
Os04g0680400 Oryza sativa ssp. japonica HOM05D005670 ORTHO05D007612 2.7e-89 332.8 290 59.0
Zm00001eb433900 Zea mays HOM05D005670 ORTHO05D007612 4.4e-87 325.5 273 60.1
Rhsim02G0128200 Rhododendron simsii HOM05D005670 ORTHO05D007612 2.2e-86 323.2 241 68.9
AagrBONN_evm.TU.Sc2ySwM_344.2129 Anthoceros agrestis HOM05D005670 ORTHO05D007612 1.5e-82 310.5 282 55.0
Ah.09g237260 Amaranthus hybridus HOM05D005670 ORTHO05D007612 7.2e-82 308.1 283 58.0
Ca_00305_v3 Cicer arietinum L. HOM05D005670 ORTHO05D007612 1.0e-80 304.3 228 66.7
ATR0680G385 Amborella trichopoda HOM05D005670 ORTHO05D007612 4.4e-79 298.9 237 62.9
Mapoly0068s0105 Marchantia polymorpha HOM05D005670 ORTHO05D007612 1.7e-78 297.0 261 56.7
Mapoly0156s0028 Marchantia polymorpha HOM05D005670 ORTHO05D007612 1.7e-78 297.0 261 56.7
Duzib192G0381 Durio zibethinus HOM05D005670 ORTHO05D007612 1.2e-76 290.8 288 54.5
MELO3C002593.2 Cucumis melo HOM05D005670 ORTHO05D007612 1.9e-74 283.5 300 53.3
Eucgr.E03117 Eucalyptus grandis HOM05D005670 ORTHO05D007612 6.1e-73 278.5 267 56.2
SMO145G0108 Selaginella moellendorffii HOM05D005670 ORTHO05D007612 1.0e-72 277.7 279 52.3
Nitab4.5_0002158g0080 Nicotiana tabacum HOM05D005670 ORTHO05D007612 3.0e-72 276.2 288 54.9
unitig_22.g6763 Utricularia gibba HOM05D005670 ORTHO05D007612 9.8e-71 271.2 266 53.0
Pp3c2_7120 Physcomitrium patens HOM05D005670 ORTHO05D007612 6.3e-70 268.5 261 54.8
Pp3c14_11050 Physcomitrium patens HOM05D005670 ORTHO05D007612 1.0e-67 261.2 289 47.1
CBR_g34175 Chara braunii HOM05D005670 ORTHO05D007612 6.8e-64 248.4 212 56.1
Rhsim06G0021500 Rhododendron simsii HOM05D005670 ORTHO05D007612 3.0e-56 223.0 202 58.9
Pp3c17_10590 Physcomitrium patens HOM05D005670 ORTHO05D007612 1.5e-55 220.7 259 47.1
MCO09G610 Micromonas commoda HOM05D005670 ORTHO05D007612 7.5e-55 218.4 278 42.8
Actinidia39456 Actinidia chinensis HOM05D005670 ORTHO05D007612 7.8e-52 208.4 293 45.1
Cre13.g592050 Chlamydomonas reinhardtii HOM05D005670 ORTHO05D007612 1.5e-47 194.1 259 43.2
Rhsim04G0080800 Rhododendron simsii HOM05D000001 ORTHO05D000003 5.8e-47 192.2 145 66.9
FAN18G0055 Fragaria x ananassa HOM05D005670 ORTHO05D007612 1.7e-46 190.7 115 84.3
Actinidia25619 Actinidia chinensis HOM05D005670 ORTHO05D007612 1.6e-44 184.1 122 74.6
PRCOL_00001419 Prasinoderma coloniale HOM05D005670 ORTHO05D007612 6.0e-44 182.2 250 39.2
FAN08G0180 Fragaria x ananassa HOM05D005670 ORTHO05D007612 7.1e-37 158.7 94 83.0
Cfa026875 Carpinus fangiana HOM05D005670 ORTHO05D007612 1.2e-36 157.9 234 35.0
Pp3s42_40 Physcomitrium patens HOM05D004829 ORTHO05D034576 1.7e-30 137.5 223 38.6
FAN18G2143 Fragaria x ananassa HOM05D005670 ORTHO05D206520 1.4e-13 81.3 41 100.0
Pp3s46_240 Physcomitrium patens HOM05D003658 ORTHO05D004457 7.1e-13 79.0 240 29.6
BcaC04g21348 Brassica carinata HOM05D005670 ORTHO05D031838 8.7e-11 72.0 60 70.0
C09p32920 Brassica napus HOM05D005670 ORTHO05D031838 8.7e-11 72.0 57 70.2
BolC9t56127H Brassica oleracea HOM05D005670 ORTHO05D031838 8.7e-11 72.0 57 70.2
SHI01971 Sapria himalayana HOM05D005670 ORTHO05D007612 3.3e-10 70.1 52 63.5
Rhsim02G0011400 Rhododendron simsii HOM05D005670 ORTHO05D007612 1.3e-09 68.2 68 54.4
Haze_26134 Corylus avellana HOM05D003658 ORTHO05D004457 1.5e-07 61.2 148 29.1


User provided reference genes

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