Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g20980 Fragaria vesca HOM05D005670 ORTHO05D007612 8.4e-75 283.5 133 100.0
FAN18G0055 Fragaria x ananassa HOM05D005670 ORTHO05D007612 2.9e-67 258.5 121 96.7
FvH4_3g09410 Fragaria vesca HOM05D005670 ORTHO05D007612 4.5e-60 234.6 128 86.7
FAN11G1478 Fragaria x ananassa HOM05D005670 ORTHO05D007612 5.9e-60 234.2 128 86.7
FAN21G0121 Fragaria x ananassa HOM05D005670 ORTHO05D007612 1.3e-59 233.0 128 85.9
RcHm_v2.0_Chr5g0008181 Rosa chinensis HOM05D005670 ORTHO05D007612 2.5e-58 228.8 128 84.4
FAN16G2869 Fragaria x ananassa HOM05D005670 ORTHO05D007612 5.5e-58 227.6 128 85.2
QL05p039856 Quercus lobata HOM05D005670 ORTHO05D007612 1.5e-52 209.5 128 75.8
MD05G1314100 Malus domestica HOM05D005670 ORTHO05D007612 2.0e-52 209.1 128 77.3
Prupe.4G045000 Prunus persica HOM05D005670 ORTHO05D007612 3.4e-52 208.4 128 75.8
CiPaw.09G058400 Carya illinoinensis HOM05D005670 ORTHO05D007612 6.5e-51 204.1 128 74.2
MD00G1095000 Malus domestica HOM05D005670 ORTHO05D007612 8.5e-51 203.8 128 72.7
Haze_06486 Corylus avellana HOM05D005670 ORTHO05D007612 1.4e-50 203.0 128 72.7
Gohir.A10G024800 Gossypium hirsutum HOM05D005670 ORTHO05D007612 5.5e-50 201.1 128 72.7
Gohir.D10G025500 Gossypium hirsutum HOM05D005670 ORTHO05D007612 5.5e-50 201.1 128 72.7
Gorai.011G026800 Gossypium raimondii HOM05D005670 ORTHO05D007612 5.5e-50 201.1 128 72.7
Potri.004G041800 Populus trichocarpa HOM05D005670 ORTHO05D007612 2.7e-49 198.7 128 71.1
Cc02_g13200 Coffea canephora HOM05D005670 ORTHO05D007612 3.6e-49 198.4 128 71.1
Lj1A1206G64 Lonicera japonica HOM05D005670 ORTHO05D007612 3.6e-49 198.4 128 71.1
TAR626G1957 Trochodendron aralioides HOM05D005670 ORTHO05D007612 6.1e-49 197.6 125 72.8
MSTRG.7329 Avicennia marina HOM05D005670 ORTHO05D007612 7.9e-49 197.2 128 70.3
Ciclev10014972m.g Citrus clementina HOM05D005670 ORTHO05D007612 7.9e-49 197.2 128 71.9
Manes.16G026300 Manihot esculenta HOM05D005670 ORTHO05D007612 1.4e-48 196.4 128 70.3
PGR042G2793 Punica granatum HOM05D005670 ORTHO05D007612 1.8e-48 196.1 128 70.3
CSS0005949 Camellia sinensis var. sinensis HOM05D005670 ORTHO05D007612 2.3e-48 195.7 128 70.3
Sabra04G0025900 Salix brachista HOM05D005670 ORTHO05D007612 2.3e-48 195.7 128 68.8
Nitab4.5_0005954g0030 Nicotiana tabacum HOM05D005670 ORTHO05D007612 3.9e-48 194.9 128 69.5
Cpa.g.sc27.55 Carica papaya HOM05D005670 ORTHO05D007612 6.7e-48 194.1 121 75.2
Duzib192G0381 Durio zibethinus HOM05D005670 ORTHO05D007612 6.7e-48 194.1 128 70.3
Aqoxy1G02519 Aquilegia oxysepala HOM05D005670 ORTHO05D007612 1.1e-47 193.4 128 68.8
Nn1g06587 Nelumbo nucifera HOM05D005670 ORTHO05D007612 1.1e-47 193.4 124 70.2
Solyc02g078400.3 Solanum lycopersicum HOM05D005670 ORTHO05D007612 1.1e-47 193.4 128 68.8
Thecc.06G189700 Theobroma cacao HOM05D005670 ORTHO05D007612 1.1e-47 193.4 128 70.3
Rhsim02G0128200 Rhododendron simsii HOM05D005670 ORTHO05D007612 1.5e-47 193.0 128 69.5
TWI38G1891 Tripterygium wilfordii HOM05D005670 ORTHO05D007612 1.5e-47 193.0 128 70.3
Eucgr.E03319 Eucalyptus grandis HOM05D005670 ORTHO05D007612 2.0e-47 192.6 128 68.8
Aa31LG9G9510 Aethionema arabicum HOM05D005670 ORTHO05D007612 2.6e-47 192.2 121 74.4
CAN.G1164.15 Capsicum annuum HOM05D005670 ORTHO05D007612 2.6e-47 192.2 128 68.0
Lsat_1_v5_gn_7_18941 Lactuca sativa HOM05D005670 ORTHO05D007612 2.6e-47 192.2 128 70.3
Nitab4.5_0002158g0080 Nicotiana tabacum HOM05D005670 ORTHO05D007612 2.6e-47 192.2 128 68.8
Zm00001eb433900 Zea mays HOM05D005670 ORTHO05D007612 2.6e-47 192.2 141 63.8
Sopen02g023260 Solanum pennellii HOM05D005670 ORTHO05D007612 3.3e-47 191.8 128 68.0
Atru.chr10.1904 Acer truncatum HOM05D005670 ORTHO05D007612 4.4e-47 191.4 124 71.0
Sp6g04000 Schrenkiella parvula HOM05D005670 ORTHO05D007612 4.4e-47 191.4 124 70.2
ECA236G2993 Erigeron canadensis HOM05D005670 ORTHO05D007612 5.7e-47 191.0 128 70.3
MBI18_g16998_MAGBIO Magnolia biondii HOM05D005670 ORTHO05D007612 5.7e-47 191.0 128 70.3
A09p25930 Brassica napus HOM05D005670 ORTHO05D007612 9.7e-47 190.3 124 70.2
BraA09t38162Z Brassica rapa HOM05D005670 ORTHO05D007612 9.7e-47 190.3 124 70.2
PSO675G5775 Papaver somniferum HOM05D005670 ORTHO05D007612 9.7e-47 190.3 125 68.8
PGSC0003DMG400022386 Solanum tuberosum HOM05D005670 ORTHO05D007612 9.7e-47 190.3 128 67.2
AL6G48490 Arabidopsis lyrata HOM05D005670 ORTHO05D007612 1.3e-46 189.9 124 70.2
DCAR_004080 Daucus carota HOM05D005670 ORTHO05D007612 1.3e-46 189.9 128 69.5
AT4G04955 Arabidopsis thaliana HOM05D005670 ORTHO05D007612 1.7e-46 189.5 124 69.4
Carub.0006s3289 Capsella rubella HOM05D005670 ORTHO05D007612 1.7e-46 189.5 124 70.2
COL.COLO4_31493 Corchorus olitorius HOM05D005670 ORTHO05D008858 1.7e-46 189.5 128 68.0
BcaC04g21352 Brassica carinata HOM05D005670 ORTHO05D007612 2.8e-46 188.7 124 70.2
C09p32840 Brassica napus HOM05D005670 ORTHO05D007612 2.8e-46 188.7 124 70.2
Thhalv10028578m.g Eutrema salsugineum HOM05D005670 ORTHO05D007612 2.8e-46 188.7 124 70.2
BcaB01g01850 Brassica carinata HOM05D005670 ORTHO05D007612 4.8e-46 188.0 124 70.2
BolC9t56124H Brassica oleracea HOM05D005670 ORTHO05D007612 8.2e-46 187.2 124 69.4
HanXRQChr04g0124101 Helianthus annuus HOM05D005670 ORTHO05D007612 1.1e-45 186.8 128 66.4
Peaxi162Scf00947g00005 Petunia axillaris HOM05D005670 ORTHO05D007612 1.1e-45 186.8 124 68.5
CARHR252570 Cardamine hirsuta HOM05D005670 ORTHO05D007612 1.8e-45 186.0 124 68.5
Hund23715 Selenicereus undatus HOM05D005670 ORTHO05D007612 2.4e-45 185.7 128 69.5
CANSAT35G0124 Cannabis sativa HOM05D005670 ORTHO05D007612 9.1e-45 183.7 128 64.8
SGA_v2.0_scaffold22G09723 Striga asiatica HOM05D005670 ORTHO05D007612 1.2e-44 183.3 128 65.6
THA.LOC104812854 Tarenaya hassleriana HOM05D005670 ORTHO05D007612 2.6e-44 182.2 123 67.5
ClCG03G005950 Citrullus lanatus HOM05D005670 ORTHO05D007612 4.5e-44 181.4 128 67.2
EL10Ac8g20366 Beta vulgaris HOM05D005670 ORTHO05D007612 7.7e-44 180.6 128 66.4
AUR62016994 Chenopodium quinoa HOM05D005670 ORTHO05D007612 1.3e-43 179.9 128 65.6
THA.LOC104806286 Tarenaya hassleriana HOM05D005670 ORTHO05D007612 2.2e-43 179.1 128 62.5
CsaV3_1G012190 Cucumis sativus L. HOM05D005670 ORTHO05D007612 3.8e-43 178.3 128 65.6
Glyma.15G072900 Glycine max HOM05D005670 ORTHO05D007612 3.8e-43 178.3 128 64.1
Sed0013715 Sechium edule HOM05D005670 ORTHO05D007612 3.8e-43 178.3 128 65.6
unitig_22.g6763 Utricularia gibba HOM05D005670 ORTHO05D007612 3.8e-43 178.3 128 64.8
CDE09G0528 Ceratophyllum demersum HOM05D005670 ORTHO05D007612 5.0e-43 177.9 128 64.1
Glyma.13G240600 Glycine max HOM05D005670 ORTHO05D007612 1.1e-42 176.8 128 63.3
Phvul.006G186800 Phaseolus vulgaris HOM05D005670 ORTHO05D007612 1.1e-42 176.8 128 64.1
ATR0680G385 Amborella trichopoda HOM05D005670 ORTHO05D007612 1.9e-42 176.0 128 61.7
Sc05g0007760 Simmondsia chinensis HOM05D005670 ORTHO05D007612 2.5e-42 175.6 128 64.8
Glyma.13G240500 Glycine max HOM05D005670 ORTHO05D007612 3.2e-42 175.3 128 62.5
Lj6g0007385 Lotus japonicus HOM05D005670 ORTHO05D007612 3.2e-42 175.3 124 66.1
Glyma.15G073000 Glycine max HOM05D005670 ORTHO05D007612 4.2e-42 174.9 128 62.5
TPR.G36745 Trifolium pratense HOM05D005670 ORTHO05D007612 4.2e-42 174.9 128 63.3
VMungo0540G1652 Vigna mungo HOM05D005670 ORTHO05D007612 4.2e-42 174.9 128 62.5
Ca_00305_v3 Cicer arietinum L. HOM05D005670 ORTHO05D007612 5.5e-42 174.5 128 63.3
Ah.09g237260 Amaranthus hybridus HOM05D005670 ORTHO05D007612 9.4e-42 173.7 121 66.1
Medtr2g013060 Medicago truncatula HOM05D005670 ORTHO05D007612 1.2e-41 173.3 128 62.5
HPP92_014737 Vanilla planifolia HOM05D005670 ORTHO05D007612 1.2e-41 173.3 128 60.9
FAN08G0180 Fragaria x ananassa HOM05D005670 ORTHO05D007612 3.6e-41 171.8 96 83.3
Lalb_Chr15g0089871 Lupinus albus HOM05D005670 ORTHO05D007612 4.7e-41 171.4 128 63.3
Sed0017986 Sechium edule HOM05D005670 ORTHO05D007612 4.7e-41 171.4 128 61.7
VMungo0540G1414 Vigna mungo HOM05D005670 ORTHO05D007612 4.7e-41 171.4 128 61.7
Phvul.006G186700 Phaseolus vulgaris HOM05D005670 ORTHO05D007612 1.0e-40 170.2 128 62.5
arahy.Tifrunner.gnm1.ann1.06VRVW Arachis hypogaea HOM05D005670 ORTHO05D007612 1.8e-40 169.5 128 64.1
arahy.Tifrunner.gnm1.ann1.RER6EK Arachis hypogaea HOM05D005670 ORTHO05D007612 1.8e-40 169.5 128 64.1
AUR62014803 Chenopodium quinoa HOM05D005670 ORTHO05D007612 2.3e-40 169.1 128 64.1
HPP92_014748 Vanilla planifolia HOM05D005670 ORTHO05D007612 3.0e-40 168.7 128 59.4
MELO3C002593.2 Cucumis melo HOM05D005670 ORTHO05D007612 8.8e-40 167.2 155 54.8
Psat1g206560 Pisum sativum HOM05D005670 ORTHO05D007612 1.1e-39 166.8 128 60.9
Mapoly0068s0105 Marchantia polymorpha HOM05D005670 ORTHO05D007612 8.2e-38 160.6 123 57.7
Mapoly0156s0028 Marchantia polymorpha HOM05D005670 ORTHO05D007612 8.2e-38 160.6 123 57.7
Migut.M01152 Erythranthe guttata HOM05D005670 ORTHO05D007612 1.2e-36 156.8 121 63.6
AagrBONN_evm.TU.Sc2ySwM_344.2129 Anthoceros agrestis HOM05D005670 ORTHO05D007612 5.9e-36 154.5 122 55.7
Pp3c2_7120 Physcomitrium patens HOM05D005670 ORTHO05D007612 8.5e-35 150.6 123 56.1
Pp3c14_11050 Physcomitrium patens HOM05D005670 ORTHO05D007612 7.2e-34 147.5 122 52.5
Pp3c17_10590 Physcomitrium patens HOM05D005670 ORTHO05D007612 2.1e-33 146.0 130 52.3
CBR_g34175 Chara braunii HOM05D005670 ORTHO05D007612 4.7e-33 144.8 128 51.6
SMO145G0108 Selaginella moellendorffii HOM05D005670 ORTHO05D007612 1.8e-29 132.9 123 49.6
Zm00001eb137210 Zea mays HOM05D005670 ORTHO05D007612 1.7e-27 126.3 116 50.9
vmacro15902 Vaccinium macrocarpon HOM05D005670 ORTHO05D007612 4.2e-26 121.7 91 62.6
MCO09G610 Micromonas commoda HOM05D005670 ORTHO05D007612 1.2e-25 120.2 122 46.7
Cre13.g592050 Chlamydomonas reinhardtii HOM05D005670 ORTHO05D007612 6.8e-24 114.4 132 44.7
Dinv07547 Davidia involucrata HOM05D005670 ORTHO05D007612 2.3e-19 99.4 64 67.2
Cfa026875 Carpinus fangiana HOM05D005670 ORTHO05D007612 1.2e-17 93.6 140 35.0
Zm00001eb374970 Zea mays HOM05D005670 ORTHO05D007612 6.8e-16 87.8 58 62.1
PRCOL_00001419 Prasinoderma coloniale HOM05D005670 ORTHO05D007612 1.2e-15 87.0 127 36.2
Duzib235G0954 Durio zibethinus HOM05D005670 ORTHO05D007612 1.5e-15 86.7 71 56.3
Rhsim04G0080800 Rhododendron simsii HOM05D000001 ORTHO05D000003 4.9e-14 81.6 74 55.4
Eucgr.E03116 Eucalyptus grandis HOM05D005670 ORTHO05D007612 4.1e-13 78.6 39 87.2
Pp3s42_40 Physcomitrium patens HOM05D004829 ORTHO05D034576 7.3e-10 67.8 89 34.8


User provided reference genes

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