Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g18700 Fragaria vesca HOM05D007638 ORTHO05D009805 2.9e-260 901.4 452 100.0
FAN13G2113 Fragaria x ananassa HOM05D007638 ORTHO05D009805 5.9e-221 770.8 409 95.1
RcHm_v2.0_Chr7g0202991 Rosa chinensis HOM05D007638 ORTHO05D009805 1.6e-218 762.7 446 87.0
FAN08G1927 Fragaria x ananassa HOM05D007638 ORTHO05D009805 8.3e-199 697.2 440 84.8
Prupe.5G071400 Prunus persica HOM05D007638 ORTHO05D009805 1.1e-195 686.8 446 76.5
MD06G1060400 Malus domestica HOM05D007638 ORTHO05D009805 1.2e-189 666.8 447 74.0
FAN18G0664 Fragaria x ananassa HOM05D007638 ORTHO05D009805 3.1e-169 599.0 306 97.4
Dinv39130 Davidia involucrata HOM05D007638 ORTHO05D009805 1.9e-166 589.7 469 63.5
Thecc.03G253300 Theobroma cacao HOM05D007638 ORTHO05D009805 2.1e-162 576.2 447 64.0
Cfa012740 Carpinus fangiana HOM05D007638 ORTHO05D009805 1.8e-161 573.2 455 64.4
QL12p012553 Quercus lobata HOM05D007638 ORTHO05D009805 2.0e-160 569.7 440 65.2
Atru.chr9.1327 Acer truncatum HOM05D007638 ORTHO05D009805 1.3e-159 567.0 446 63.7
TWI15G0131 Tripterygium wilfordii HOM05D007638 ORTHO05D009805 2.9e-159 565.8 443 63.7
Gorai.006G213300 Gossypium raimondii HOM05D007638 ORTHO05D009805 4.2e-158 562.0 444 62.4
CiPaw.12G109000 Carya illinoinensis HOM05D007638 ORTHO05D009805 1.6e-157 560.1 444 65.1
Potri.003G110600 Populus trichocarpa HOM05D007638 ORTHO05D009805 2.1e-157 559.7 453 64.5
GSVIVG01001312001 Vitis vinifera HOM05D007638 ORTHO05D009805 2.1e-157 559.7 454 62.1
Gohir.D09G190600 Gossypium hirsutum HOM05D007638 ORTHO05D009805 3.5e-157 558.9 444 62.2
Manes.02G038700 Manihot esculenta HOM05D007638 ORTHO05D009805 1.0e-156 557.4 450 63.3
Sed0016401 Sechium edule HOM05D007638 ORTHO05D009805 1.5e-155 553.5 441 63.3
Gohir.A09G196000 Gossypium hirsutum HOM05D007638 ORTHO05D009805 1.9e-155 553.1 444 61.9
Hma1.2p1_2238F.1_g317800 Hydrangea macrophylla HOM05D007638 ORTHO05D009805 4.0e-153 545.4 446 62.3
CANSAT21G1304 Cannabis sativa HOM05D007638 ORTHO05D009805 1.1e-150 537.3 451 60.1
Sabra03G0076700 Salix brachista HOM05D007638 ORTHO05D009805 1.8e-148 530.0 457 61.9
CsaV3_5G004170 Cucumis sativus L. HOM05D007638 ORTHO05D009805 1.1e-147 527.3 445 60.4
HanXRQChr17g0549771 Helianthus annuus HOM05D007638 ORTHO05D009805 1.3e-146 523.9 458 58.7
Lj4g0022413 Lotus japonicus HOM05D007638 ORTHO05D009805 2.1e-146 523.1 446 59.4
TAR636G1390 Trochodendron aralioides HOM05D007638 ORTHO05D009805 2.8e-146 522.7 454 59.5
Ca_21958_v3 Cicer arietinum L. HOM05D007638 ORTHO05D009805 2.9e-143 512.7 448 58.5
Nn1g01039 Nelumbo nucifera HOM05D007638 ORTHO05D009805 3.8e-143 512.3 470 57.0
Oeu017018.1 Olea europaea HOM05D007638 ORTHO05D009805 4.2e-142 508.8 460 55.2
Ciclev10020230m.g Citrus clementina HOM05D007638 ORTHO05D009805 5.5e-142 508.4 454 58.6
Solyc08g078750.4 Solanum lycopersicum HOM05D007638 ORTHO05D009805 1.6e-141 506.9 462 56.9
Lalb_Chr16g0389341 Lupinus albus HOM05D007638 ORTHO05D009805 1.0e-140 504.2 450 57.3
Glyma.05G058500 Glycine max HOM05D007638 ORTHO05D009805 2.3e-140 503.1 465 58.3
Sopen08g027220 Solanum pennellii HOM05D007638 ORTHO05D009805 3.9e-140 502.3 462 55.8
CAN.G1218.20 Capsicum annuum HOM05D007638 ORTHO05D009805 7.4e-139 498.0 462 56.1
TPR.G37700 Trifolium pratense HOM05D007638 ORTHO05D009805 1.2e-136 490.7 447 57.3
arahy.Tifrunner.gnm1.ann1.UY0NCU Arachis hypogaea HOM05D007638 ORTHO05D009805 1.0e-135 487.6 450 57.3
Rhsim09G0039100 Rhododendron simsii HOM05D007638 ORTHO05D009805 2.9e-135 486.1 550 48.7
Cc08_g12610 Coffea canephora HOM05D007638 ORTHO05D009805 3.2e-134 482.6 474 54.9
Sc07g0009320 Simmondsia chinensis HOM05D007638 ORTHO05D009805 9.4e-134 481.1 446 54.9
EL10Ac5g13054 Beta vulgaris HOM05D007638 ORTHO05D009805 5.7e-131 471.9 459 54.5
Lsat_1_v5_gn_3_541 Lactuca sativa HOM05D007638 ORTHO05D009805 5.7e-131 471.9 457 55.8
THA.LOC104812781 Tarenaya hassleriana HOM05D007638 ORTHO05D009805 4.8e-130 468.8 469 51.4
Migut.A00967 Erythranthe guttata HOM05D007638 ORTHO05D009805 1.7e-127 460.3 472 51.5
Hma1.2p1_3173F.1_g333580 Hydrangea macrophylla HOM05D007638 ORTHO05D009805 3.8e-127 459.1 461 54.7
Ah.02g116770 Amaranthus hybridus HOM05D007638 ORTHO05D009805 1.6e-125 453.8 463 51.2
PGR031G3001 Punica granatum HOM05D007638 ORTHO05D009805 4.7e-125 452.2 455 55.6
arahy.Tifrunner.gnm1.ann1.E4IRCP Arachis hypogaea HOM05D007638 ORTHO05D009805 1.8e-124 450.3 416 57.0
Peaxi162Scf00002g00171 Petunia axillaris HOM05D007638 ORTHO05D009805 3.0e-124 449.5 453 53.4
Hund14529 Selenicereus undatus HOM05D007638 ORTHO05D009805 8.8e-124 448.0 458 52.0
Psat4g071600 Pisum sativum HOM05D007638 ORTHO05D009805 2.2e-119 433.3 392 57.7
MSTRG.25529 Avicennia marina HOM05D007638 ORTHO05D009805 2.7e-117 426.4 382 56.0
Eucgr.D02067 Eucalyptus grandis HOM05D007638 ORTHO05D009805 6.1e-117 425.2 368 58.4
AUR62007504 Chenopodium quinoa HOM05D007638 ORTHO05D009805 1.7e-114 417.2 459 49.2
PSO781G0038 Papaver somniferum HOM05D007638 ORTHO05D009805 1.6e-112 410.6 465 48.8
ClCG01G003990 Citrullus lanatus HOM05D007638 ORTHO05D009805 5.9e-112 408.7 465 49.9
SGA_v2.0_scaffold120G32873 Striga asiatica HOM05D007638 ORTHO05D009805 1.0e-111 407.9 526 45.2
ATR1153G083 Amborella trichopoda HOM05D007638 ORTHO05D009805 2.1e-109 400.2 446 48.4
Nitab4.5_0008481g0020 Nicotiana tabacum HOM05D007638 ORTHO05D009805 3.0e-108 396.4 451 49.9
CDE11G1220 Ceratophyllum demersum HOM05D007638 ORTHO05D009805 7.5e-107 391.7 457 51.6
Aa31LG2G12650 Aethionema arabicum HOM05D007638 ORTHO05D009805 2.2e-106 390.2 442 46.2
DCAR_008488 Daucus carota HOM05D007638 ORTHO05D009805 6.1e-101 372.1 310 61.0
vmacro00554 Vaccinium macrocarpon HOM05D007638 ORTHO05D009805 5.2e-100 369.0 528 43.2
PSO541G0423 Papaver somniferum HOM05D007638 ORTHO05D009805 8.8e-100 368.2 438 47.3
Sp7g15100 Schrenkiella parvula HOM05D007638 ORTHO05D009805 1.1e-97 361.3 442 44.6
AUR62039957 Chenopodium quinoa HOM05D007638 ORTHO05D009805 2.1e-93 347.1 457 43.8
Nitab4.5_0000312g0180 Nicotiana tabacum HOM05D007638 ORTHO05D009805 2.1e-93 347.1 335 54.6
SEGI_06661 Sequoiadendron giganteum HOM05D007638 ORTHO05D009805 5.7e-91 339.0 493 40.8
Aqoxy7G00749 Aquilegia oxysepala HOM05D007638 ORTHO05D009805 1.6e-88 330.9 429 44.8
Duzib084G1003 Durio zibethinus HOM05D007638 ORTHO05D009805 2.0e-88 330.5 333 53.2
PGSC0003DMG400004754 Solanum tuberosum HOM05D007638 ORTHO05D009805 3.4e-83 313.2 343 51.0
FAN04G2384 Fragaria x ananassa HOM05D007638 ORTHO05D009805 9.8e-83 311.6 206 83.0
Pp3c9_14850 Physcomitrium patens HOM05D007638 ORTHO05D009805 3.9e-79 299.7 491 36.5
Cpa.g.sc29.142 Carica papaya HOM05D007638 ORTHO05D009805 2.8e-77 293.5 292 56.2
DCAR_008487 Daucus carota HOM05D007638 ORTHO05D009805 1.3e-71 274.6 341 47.5
AagrBONN_evm.TU.Sc2ySwM_228.4592 Anthoceros agrestis HOM05D007638 ORTHO05D009805 7.5e-67 258.8 477 36.9
CBR_g20284 Chara braunii HOM05D007638 ORTHO05D009805 1.7e-66 257.7 352 36.4
MELO3C033998.2 Cucumis melo HOM05D007638 ORTHO05D009805 3.2e-65 253.4 299 51.8
Actinidia02124 Actinidia chinensis HOM05D007638 ORTHO05D009805 6.2e-61 239.2 362 44.8
Eucgr.D02064 Eucalyptus grandis HOM05D007638 ORTHO05D009805 1.1e-57 228.4 321 43.6
Haze_07891 Corylus avellana HOM05D007638 ORTHO05D009805 9.9e-51 205.3 262 51.9
CSS0011551 Camellia sinensis var. sinensis HOM05D007638 ORTHO05D009805 3.0e-39 167.2 95 76.8
CSS0041058 Camellia sinensis var. sinensis HOM05D007638 ORTHO05D009805 1.9e-25 121.3 122 59.0
Eucgr.L01520 Eucalyptus grandis HOM05D007638 ORTHO05D009805 1.5e-14 85.1 123 47.2
THA.LOC104823368 Tarenaya hassleriana HOM05D000032 ORTHO05D009383 4.8e-13 80.1 61 59.0
AagrBONN_evm.TU.Sc2ySwM_369.192 Anthoceros agrestis HOM05D000032 ORTHO05D009383 1.4e-12 78.6 83 54.2
Lsat_1_v5_gn_2_101321 Lactuca sativa HOM05D000032 ORTHO05D009383 1.4e-12 78.6 77 50.6
SGA_v2.0_scaffold8G04635 Striga asiatica HOM05D000032 ORTHO05D009383 2.4e-12 77.8 72 50.0
AUR62001157 Chenopodium quinoa HOM05D000032 ORTHO05D009383 4.1e-12 77.0 60 58.3
AUR62016519 Chenopodium quinoa HOM05D000032 ORTHO05D009383 5.3e-12 76.6 65 55.4
Migut.D00539 Erythranthe guttata HOM05D000032 ORTHO05D009383 5.3e-12 76.6 85 48.2
Haze_07890 Corylus avellana HOM05D007638 ORTHO05D009805 6.9e-12 76.3 37 86.5
TWI32G0219 Tripterygium wilfordii HOM05D000032 ORTHO05D009383 6.9e-12 76.3 64 56.2
Pp3c8_12050 Physcomitrium patens HOM05D000032 ORTHO05D009383 1.2e-11 75.5 55 60.0
CARHR074860 Cardamine hirsuta HOM05D000032 ORTHO05D009383 1.5e-11 75.1 53 62.3
Aa31LG5G11250 Aethionema arabicum HOM05D000032 ORTHO05D009383 2.0e-11 74.7 68 48.5
Cpa.g.sc17.215 Carica papaya HOM05D000032 ORTHO05D009383 2.0e-11 74.7 73 56.2
Ah.15g094020 Amaranthus hybridus HOM05D000032 ORTHO05D009383 2.6e-11 74.3 64 54.7
unitig_0.g181 Utricularia gibba HOM05D000032 ORTHO05D009383 2.6e-11 74.3 78 50.0
CBR_g3873 Chara braunii HOM05D000032 ORTHO05D009383 3.4e-11 73.9 55 60.0
Eucgr.K02338 Eucalyptus grandis HOM05D000032 ORTHO05D009383 3.4e-11 73.9 72 52.8
FvH4_6g35850 Fragaria vesca HOM05D000032 ORTHO05D009383 3.4e-11 73.9 70 52.9
FAN02G2103 Fragaria x ananassa HOM05D000032 ORTHO05D009383 3.4e-11 73.9 70 52.9
FAN05G0348 Fragaria x ananassa HOM05D000032 ORTHO05D009383 3.4e-11 73.9 70 52.9
FAN14G3162 Fragaria x ananassa HOM05D000032 ORTHO05D009383 3.4e-11 73.9 70 52.9
FAN14G3671 Fragaria x ananassa HOM05D000032 ORTHO05D009383 3.4e-11 73.9 70 52.9
Sp3g00020 Schrenkiella parvula HOM05D000032 ORTHO05D009383 3.4e-11 73.9 75 50.7
GSVIVG01032945001 Vitis vinifera HOM05D007638 ORTHO05D009383 3.4e-11 73.9 49 67.3
AL3G10020 Arabidopsis lyrata HOM05D000032 ORTHO05D009383 4.5e-11 73.6 76 50.0
Lj1A470G20 Lonicera japonica HOM05D000032 ORTHO05D009383 4.5e-11 73.6 84 44.0
Lj1A478G35 Lonicera japonica HOM05D000032 ORTHO05D009383 4.5e-11 73.6 84 44.0
Solyc01g006340.3 Solanum lycopersicum HOM05D000032 ORTHO05D009383 4.5e-11 73.6 63 54.0
MSTRG.18394 Avicennia marina HOM05D000032 ORTHO05D009383 5.9e-11 73.2 66 56.1
EL10Ac7g17945 Beta vulgaris HOM05D000032 ORTHO05D009383 5.9e-11 73.2 62 56.5
PGSC0003DMG400032150 Solanum tuberosum HOM05D000032 ORTHO05D009383 5.9e-11 73.2 83 48.2
CsaV3_3G020080 Cucumis sativus L. HOM05D000032 ORTHO05D009383 7.7e-11 72.8 70 48.6
Eucgr.L03255 Eucalyptus grandis HOM05D000032 ORTHO05D009383 7.7e-11 72.8 72 51.4
HanXRQChr14g0453351 Helianthus annuus HOM05D000032 ORTHO05D009383 7.7e-11 72.8 70 50.0
Sopen01g002340 Solanum pennellii HOM05D000032 ORTHO05D009383 7.7e-11 72.8 83 48.2
Lalb_Chr03g0043781 Lupinus albus HOM05D000032 ORTHO05D009383 1.0e-10 72.4 63 49.2
Aqoxy7G03583 Aquilegia oxysepala HOM05D000032 ORTHO05D009383 1.3e-10 72.0 64 56.2
Peaxi162Scf00192g00012 Petunia axillaris HOM05D000032 ORTHO05D009383 1.3e-10 72.0 65 52.3
Glyma.02G068300 Glycine max HOM05D000032 ORTHO05D009383 1.7e-10 71.6 59 57.6
ClCG05G012450 Citrullus lanatus HOM05D000032 ORTHO05D009383 2.2e-10 71.2 71 50.7
Nn3g18407 Nelumbo nucifera HOM05D000032 ORTHO05D009383 2.2e-10 71.2 101 45.5
Nitab4.5_0003436g0100 Nicotiana tabacum HOM05D000032 ORTHO05D009383 2.2e-10 71.2 63 54.0
Prupe.3G315400 Prunus persica HOM05D001005 ORTHO05D000836 2.2e-10 71.2 49 63.3
Atru.chr12.440 Acer truncatum HOM05D000032 ORTHO05D009383 2.9e-10 70.9 63 57.1
DCAR_008449 Daucus carota HOM05D000032 ORTHO05D009383 2.9e-10 70.9 55 60.0
Thhalv10020567m.g Eutrema salsugineum HOM05D000032 ORTHO05D009383 2.9e-10 70.9 74 47.3
MBI11_g17278_MAGBIO Magnolia biondii HOM05D000032 ORTHO05D009383 3.8e-10 70.5 70 50.0
PSO384G0785 Papaver somniferum HOM05D000032 ORTHO05D009383 3.8e-10 70.5 58 56.9
RcHm_v2.0_Chr2g0147891 Rosa chinensis HOM05D000032 ORTHO05D009383 3.8e-10 70.5 70 51.4
ATR0824G065 Amborella trichopoda HOM05D000032 ORTHO05D009383 6.5e-10 69.7 62 56.5
arahy.Tifrunner.gnm1.ann1.8UB6M3 Arachis hypogaea HOM05D000032 ORTHO05D009383 6.5e-10 69.7 51 60.8
FAN09G2555 Fragaria x ananassa HOM05D000032 ORTHO05D009383 6.5e-10 69.7 70 51.4
MD17G1003800 Malus domestica HOM05D000032 ORTHO05D009383 6.5e-10 69.7 80 50.0
Manes.04G096700 Manihot esculenta HOM05D000032 ORTHO05D009383 6.5e-10 69.7 53 58.5
PGR044G2709 Punica granatum HOM05D000032 ORTHO05D009383 6.5e-10 69.7 73 49.3
CSS0028588 Camellia sinensis var. sinensis HOM05D000032 ORTHO05D009383 8.5e-10 69.3 61 54.1
CDE07G0397 Ceratophyllum demersum HOM05D000032 ORTHO05D009383 8.5e-10 69.3 50 58.0
Hma1.2p1_0098F.1_g048240 Hydrangea macrophylla HOM05D000032 ORTHO05D009383 8.5e-10 69.3 76 48.7
PSO339G1569 Papaver somniferum HOM05D000032 ORTHO05D009383 8.5e-10 69.3 43 67.4
Rhsim13G0227500 Rhododendron simsii HOM05D006358 ORTHO05D009383 8.5e-10 69.3 46 67.4
TPR.G6050 Trifolium pratense HOM05D000032 ORTHO05D009383 8.5e-10 69.3 58 53.4
CSS0019503 Camellia sinensis var. sinensis HOM05D000032 ORTHO05D009383 1.1e-09 68.9 55 54.5
Zm00001eb235630 Zea mays HOM05D000032 ORTHO05D009383 1.1e-09 68.9 82 50.0
AT3G02065 Arabidopsis thaliana HOM05D000032 ORTHO05D009383 1.4e-09 68.6 58 51.7
ECA238G2389 Erigeron canadensis HOM05D000032 ORTHO05D009383 1.4e-09 68.6 89 43.8
Potri.014G140100 Populus trichocarpa HOM05D000032 ORTHO05D009383 1.4e-09 68.6 67 46.3
vmacro21760 Vaccinium macrocarpon HOM05D000032 ORTHO05D009383 1.4e-09 68.6 67 53.7
CAN.G140.9 Capsicum annuum HOM05D000032 ORTHO05D009383 2.5e-09 67.8 60 53.3
Thecc.04G052100 Theobroma cacao HOM05D000032 ORTHO05D009383 2.5e-09 67.8 73 46.6
Ciclev10017882m.g Citrus clementina HOM05D000032 ORTHO05D009383 3.2e-09 67.4 50 56.0
Glyma.16G149800 Glycine max HOM05D000032 ORTHO05D009383 4.2e-09 67.0 70 47.1
Cc01_g03330 Coffea canephora HOM05D000032 ORTHO05D009383 5.5e-09 66.6 86 44.2
MELO3C014755.2 Cucumis melo HOM05D000032 ORTHO05D009383 5.5e-09 66.6 100 38.0
Medtr6g033070 Medicago truncatula HOM05D000032 ORTHO05D009383 5.5e-09 66.6 106 35.8
Sc14g0008440 Simmondsia chinensis HOM05D000032 ORTHO05D009383 5.5e-09 66.6 81 45.7
TAR633G1362 Trochodendron aralioides HOM05D000032 ORTHO05D009383 5.5e-09 66.6 85 42.4
CiPaw.14G093500 Carya illinoinensis HOM05D000032 ORTHO05D009383 7.2e-09 66.2 80 47.5
Ca_04506_v3 Cicer arietinum L. HOM05D000032 ORTHO05D009383 9.4e-09 65.9 63 46.0
Sabra14G0105500 Salix brachista HOM05D000032 ORTHO05D009383 1.2e-08 65.5 58 50.0
VMungo0464G1688 Vigna mungo HOM05D000032 ORTHO05D009383 1.2e-08 65.5 88 40.9
arahy.Tifrunner.gnm1.ann1.BLPY9G Arachis hypogaea HOM05D007638 ORTHO05D009383 2.1e-08 64.7 71 50.7
arahy.Tifrunner.gnm1.ann1.U3NDHF Arachis hypogaea HOM05D000032 ORTHO05D009383 2.1e-08 64.7 75 48.0
Lj3g0015614 Lotus japonicus HOM05D000032 ORTHO05D009383 2.1e-08 64.7 75 45.3
Psat1g014560 Pisum sativum HOM05D000032 ORTHO05D009383 2.7e-08 64.3 58 50.0
QL02p068178 Quercus lobata HOM05D000032 ORTHO05D009383 3.6e-08 63.9 112 39.3
Carub.0003s0002 Capsella rubella HOM05D000032 ORTHO05D009383 4.7e-08 63.5 74 45.9
COL.COLO4_13406 Corchorus olitorius HOM05D000032 ORTHO05D009383 4.7e-08 63.5 43 62.8
Cfa010055 Carpinus fangiana HOM05D001005 ORTHO05D000836 1.0e-07 62.4 89 39.3
Mapoly0135s0036 Marchantia polymorpha HOM05D000032 ORTHO05D009383 1.0e-07 62.4 70 44.3
SHI50144 Sapria himalayana HOM05D000032 ORTHO05D009383 1.8e-07 61.6 49 51.0
Duzib187G1127 Durio zibethinus HOM05D000032 ORTHO05D009383 2.3e-07 61.2 70 44.3
Gorai.011G088700 Gossypium raimondii HOM05D000032 ORTHO05D009383 5.1e-07 60.1 68 42.6
Gohir.D10G081800 Gossypium hirsutum HOM05D000032 ORTHO05D009383 8.8e-07 59.3 68 42.6
Gohir.A10G069700 Gossypium hirsutum HOM05D000032 ORTHO05D009383 1.5e-06 58.5 68 41.2
EL10Ac9g22788 Beta vulgaris HOM05D000032 ORTHO05D009383 3.3e-06 57.4 104 38.5
SMO201G0222 Selaginella moellendorffii HOM05D000032 ORTHO05D009383 9.7e-06 55.8 42 57.1


User provided reference genes

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