Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g14110 Fragaria vesca HOM05D003502 ORTHO05D004250 0.0e+00 2157.9 1162 100.0
FvH4_7g33760 Fragaria vesca HOM05D003502 ORTHO05D004250 0.0e+00 1210.3 793 83.6
FAN01G2009 Fragaria x ananassa HOM05D000067 ORTHO05D004250 0.0e+00 1206.4 793 83.4
FAN03G1761 Fragaria x ananassa HOM05D003502 ORTHO05D004250 0.0e+00 1202.6 793 83.0
RcHm_v2.0_Chr1g0383891 Rosa chinensis HOM05D003502 ORTHO05D004250 0.0e+00 1134.8 793 78.6
FAN03G0354 Fragaria x ananassa HOM05D003502 ORTHO05D004250 0.0e+00 1078.5 712 82.7
Prupe.2G324200 Prunus persica HOM05D003502 ORTHO05D004250 4.5e-289 998.4 796 70.6
FAN10G2333 Fragaria x ananassa HOM05D003502 ORTHO05D004250 2.3e-285 986.1 776 74.6
MD01G1234000 Malus domestica HOM05D003502 ORTHO05D004250 1.5e-284 983.4 791 68.6
MD07G1306200 Malus domestica HOM05D003502 ORTHO05D004250 7.4e-284 981.1 791 69.3
Prupe.3G137600 Prunus persica HOM05D003502 ORTHO05D004250 1.3e-283 980.3 797 69.1
CiPaw.01G206800 Carya illinoinensis HOM05D003502 ORTHO05D004250 3.3e-260 902.5 798 63.5
Cfa013318 Carpinus fangiana HOM05D003502 ORTHO05D004250 9.7e-260 901.0 796 63.6
QL06p046981 Quercus lobata HOM05D003502 ORTHO05D004250 8.8e-253 877.9 796 61.8
FAN10G2252 Fragaria x ananassa HOM05D000067 ORTHO05D004250 2.0e-252 876.7 793 66.0
Manes.08G163900 Manihot esculenta HOM05D003502 ORTHO05D004250 1.1e-250 870.9 801 61.3
Haze_16219 Corylus avellana HOM05D003502 ORTHO05D004250 1.3e-248 864.0 877 57.7
Dinv29168 Davidia involucrata HOM05D003502 ORTHO05D004250 1.9e-247 860.1 798 59.9
Atru.chr8.760 Acer truncatum HOM05D003502 ORTHO05D004250 7.0e-242 841.6 797 60.2
CANSAT56G1789 Cannabis sativa HOM05D003502 ORTHO05D004250 1.2e-241 840.9 798 59.5
CSS0032069 Camellia sinensis var. sinensis HOM05D003502 ORTHO05D004250 5.0e-240 835.5 802 58.9
Actinidia38803 Actinidia chinensis HOM05D003502 ORTHO05D004250 1.6e-238 830.5 801 60.3
Ciclev10000035m.g Citrus clementina HOM05D003502 ORTHO05D004250 4.0e-237 825.9 797 60.2
TWI60G0235 Tripterygium wilfordii HOM05D003502 ORTHO05D004250 4.9e-235 818.9 802 57.4
Thecc.10G089300 Theobroma cacao HOM05D003502 ORTHO05D004250 1.4e-234 817.4 803 59.0
MELO3C005424.2 Cucumis melo HOM05D003502 ORTHO05D004250 1.8e-234 817.0 797 57.1
Duzib114G0543 Durio zibethinus HOM05D003502 ORTHO05D004250 7.0e-234 815.1 803 58.7
CsaV3_5G005350 Cucumis sativus L. HOM05D003502 ORTHO05D004250 3.5e-233 812.8 797 56.8
ClCG01G005070 Citrullus lanatus HOM05D003502 ORTHO05D004250 3.0e-232 809.7 797 56.8
CSS0027375 Camellia sinensis var. sinensis HOM05D003502 ORTHO05D004250 5.0e-232 808.9 802 57.6
Lj3C889G13 Lonicera japonica HOM05D003502 ORTHO05D004250 8.6e-232 808.1 801 57.9
Sabra19G0056000 Salix brachista HOM05D003502 ORTHO05D004250 1.5e-231 807.4 798 57.3
vmacro06503 Vaccinium macrocarpon HOM05D003502 ORTHO05D004250 8.0e-230 801.6 810 57.8
Potri.019G052500 Populus trichocarpa HOM05D003502 ORTHO05D004250 1.8e-229 800.4 798 57.0
Rhsim03G0220800 Rhododendron simsii HOM05D003502 ORTHO05D004250 7.5e-228 795.0 820 56.1
COL.COLO4_32890 Corchorus olitorius HOM05D003502 ORTHO05D004250 9.8e-228 794.7 802 58.0
Gohir.D04G006300 Gossypium hirsutum HOM05D003502 ORTHO05D004250 1.4e-226 790.8 803 56.4
GSVIVG01024439001 Vitis vinifera HOM05D003502 ORTHO05D004250 1.2e-225 787.7 796 57.0
Sed0020646 Sechium edule HOM05D003502 ORTHO05D004250 2.0e-225 786.9 798 55.5
Sed0005246 Sechium edule HOM05D003502 ORTHO05D004250 3.5e-225 786.2 798 55.6
Gohir.A05G409100 Gossypium hirsutum HOM05D003502 ORTHO05D004250 4.6e-225 785.8 806 56.5
CANSAT21G0253 Cannabis sativa HOM05D003502 ORTHO05D004250 2.5e-223 780.0 795 56.0
Lalb_Chr01g0010621 Lupinus albus HOM05D003502 ORTHO05D004250 2.8e-222 776.5 797 55.1
Lj6g0010845 Lotus japonicus HOM05D003502 ORTHO05D004250 2.0e-220 770.4 791 54.5
Psat6g094760 Pisum sativum HOM05D003502 ORTHO05D004250 1.3e-219 767.7 793 54.1
Ca_25960_v3 Cicer arietinum L. HOM05D003502 ORTHO05D004250 6.4e-219 765.4 796 56.0
VMungo0720G2129 Vigna mungo HOM05D003502 ORTHO05D004250 7.1e-218 761.9 797 54.2
Phvul.007G241300 Phaseolus vulgaris HOM05D003502 ORTHO05D004250 1.2e-217 761.1 796 54.1
TPR.G19134 Trifolium pratense HOM05D003502 ORTHO05D004250 1.6e-217 760.8 799 54.1
Medtr1g048630 Medicago truncatula HOM05D003502 ORTHO05D004250 1.5e-215 754.2 799 55.1
Glyma.10G118100 Glycine max HOM05D003502 ORTHO05D004250 1.9e-215 753.8 795 55.2
arahy.Tifrunner.gnm1.ann1.KF4QTS Arachis hypogaea HOM05D003502 ORTHO05D004250 1.2e-214 751.1 800 54.0
Psat6g094880 Pisum sativum HOM05D003502 ORTHO05D004250 5.2e-213 745.7 798 53.1
DCAR_014574 Daucus carota HOM05D003502 ORTHO05D004250 2.7e-209 733.4 801 53.2
ECA246G0536 Erigeron canadensis HOM05D003502 ORTHO05D004250 1.3e-208 731.1 779 53.7
Cc02_g00380 Coffea canephora HOM05D003502 ORTHO05D004250 3.0e-208 729.9 800 52.5
MSTRG.336 Avicennia marina HOM05D003502 ORTHO05D004250 1.3e-203 714.5 810 50.4
Nitab4.5_0005081g0060 Nicotiana tabacum HOM05D003502 ORTHO05D004250 1.3e-203 714.5 798 52.0
SGA_v2.0_scaffold283G47001 Striga asiatica HOM05D003502 ORTHO05D004250 4.9e-203 712.6 795 51.3
Oeu010168.1 Olea europaea HOM05D003502 ORTHO05D004250 8.4e-203 711.8 804 51.4
Lsat_1_v5_gn_6_108521 Lactuca sativa HOM05D003502 ORTHO05D004250 1.2e-201 708.0 774 52.8
Nitab4.5_0000021g0390 Nicotiana tabacum HOM05D003502 ORTHO05D004250 1.3e-200 704.5 798 51.8
Peaxi162Scf00745g00859 Petunia axillaris HOM05D003502 ORTHO05D004250 1.7e-200 704.1 798 51.6
Migut.F01860 Erythranthe guttata HOM05D003502 ORTHO05D004250 2.3e-200 703.7 803 51.8
Solyc03g096890.3 Solanum lycopersicum HOM05D003502 ORTHO05D004250 2.5e-199 700.3 798 52.5
Sopen03g027640 Solanum pennellii HOM05D003502 ORTHO05D004250 5.6e-199 699.1 798 52.5
TAR624G0570 Trochodendron aralioides HOM05D003502 ORTHO05D004250 9.6e-199 698.4 726 55.2
Eucgr.A02961 Eucalyptus grandis HOM05D003502 ORTHO05D004250 1.3e-198 698.0 799 51.1
PSO384G3919 Papaver somniferum HOM05D003502 ORTHO05D004250 2.8e-198 696.8 781 51.3
CAN.G303.73 Capsicum annuum HOM05D003502 ORTHO05D004250 1.8e-197 694.1 799 52.8
THA.LOC104811354 Tarenaya hassleriana HOM05D003502 ORTHO05D004250 1.8e-197 694.1 797 52.1
PSO339G0895 Papaver somniferum HOM05D003502 ORTHO05D004250 5.8e-196 689.1 781 51.2
CARHR040300 Cardamine hirsuta HOM05D003502 ORTHO05D004250 7.6e-196 688.7 796 51.5
HanXRQChr05g0148851 Helianthus annuus HOM05D003502 ORTHO05D004250 1.7e-195 687.6 779 51.3
Sp1g37070 Schrenkiella parvula HOM05D003502 ORTHO05D004250 5.4e-194 682.6 796 51.9
AL1G57830 Arabidopsis lyrata HOM05D003502 ORTHO05D004250 1.2e-193 681.4 795 50.3
Carub.0001s3934 Capsella rubella HOM05D003502 ORTHO05D004250 1.6e-193 681.0 795 50.1
C03p89540 Brassica napus HOM05D003502 ORTHO05D004250 2.1e-193 680.6 796 50.5
BolC3t21268H Brassica oleracea HOM05D003502 ORTHO05D004250 2.1e-193 680.6 796 50.5
Thhalv10011182m.g Eutrema salsugineum HOM05D003502 ORTHO05D004250 2.7e-193 680.2 795 51.3
A08p03270 Brassica napus HOM05D003502 ORTHO05D004250 3.5e-193 679.9 796 50.5
BraA08t32360Z Brassica rapa HOM05D003502 ORTHO05D004250 3.5e-193 679.9 796 50.5
BcaC01g01220 Brassica carinata HOM05D003502 ORTHO05D004250 4.6e-193 679.5 795 50.3
BcaB04g17262 Brassica carinata HOM05D003502 ORTHO05D004250 2.3e-192 677.2 796 50.4
MBI04_g06222_MAGBIO Magnolia biondii HOM05D003502 ORTHO05D004250 3.6e-190 669.8 817 48.3
Aa31LG10G3970 Aethionema arabicum HOM05D003502 ORTHO05D004250 6.2e-190 669.1 806 50.6
AT1G50240 Arabidopsis thaliana HOM05D003502 ORTHO05D004250 6.2e-190 669.1 793 50.4
Sc06g0007830 Simmondsia chinensis HOM05D003502 ORTHO05D004250 5.3e-189 666.0 797 50.6
Aqoxy7G00566 Aquilegia oxysepala HOM05D003502 ORTHO05D004250 5.8e-188 662.5 792 53.2
Glyma.20G069700 Glycine max HOM05D003502 ORTHO05D004250 1.3e-187 661.4 692 53.3
Nn1g07854 Nelumbo nucifera HOM05D003502 ORTHO05D004250 4.8e-182 642.9 752 50.4
PGR042G1531 Punica granatum HOM05D003502 ORTHO05D004250 4.8e-182 642.9 804 49.4
AUR62006100 Chenopodium quinoa HOM05D003502 ORTHO05D004250 2.4e-181 640.6 781 49.6
EL10Ac3g05293 Beta vulgaris HOM05D003502 ORTHO05D004250 1.2e-180 638.3 781 49.7
AUR62019393 Chenopodium quinoa HOM05D003502 ORTHO05D004250 3.8e-179 633.3 781 49.6
Hund20998 Selenicereus undatus HOM05D003502 ORTHO05D004250 6.7e-176 622.5 778 48.8
SHI02505 Sapria himalayana HOM05D003502 ORTHO05D004250 1.4e-173 614.8 827 46.2
SalBow6G5501 Salvia bowleyana HOM05D003502 ORTHO05D004250 7.6e-172 609.0 765 47.3
Ah.07g205720 Amaranthus hybridus HOM05D003502 ORTHO05D004250 1.0e-168 598.6 731 48.8
Gorai.012G007900 Gossypium raimondii HOM05D003502 ORTHO05D004250 5.0e-163 579.7 788 47.5
arahy.Tifrunner.gnm1.ann1.FUJ27D Arachis hypogaea HOM05D003502 ORTHO05D004250 1.2e-161 575.1 799 46.1
HPP92_008318 Vanilla planifolia HOM05D003502 ORTHO05D004250 1.4e-160 571.6 775 44.4
Gorai.012G007600 Gossypium raimondii HOM05D003502 ORTHO05D004250 1.3e-158 565.1 570 56.8
Zm00001eb141360 Zea mays HOM05D003502 ORTHO05D004250 2.6e-151 540.8 795 40.9
Os12g0433500 Oryza sativa ssp. japonica HOM05D003502 ORTHO05D004250 1.0e-144 518.8 792 39.8
EL10Ac1g00998 Beta vulgaris HOM05D003502 ORTHO05D004250 1.8e-136 491.5 817 40.9
ATR0561G216 Amborella trichopoda HOM05D003502 ORTHO05D004250 3.0e-136 490.7 751 42.9
AUR62029697 Chenopodium quinoa HOM05D003502 ORTHO05D004250 2.7e-132 477.6 700 43.7
BolC5t32137H Brassica oleracea HOM05D003502 ORTHO05D004250 1.3e-118 432.2 642 44.1
AUR62006364 Chenopodium quinoa HOM05D003502 ORTHO05D004250 7.0e-117 426.4 646 43.3
C05p34020 Brassica napus HOM05D003502 ORTHO05D004250 7.8e-116 422.9 794 38.7
CDE06G0840 Ceratophyllum demersum HOM05D000250 ORTHO05D002477 1.8e-112 411.8 687 39.0
Duzib106G1276 Durio zibethinus HOM05D003502 ORTHO05D004250 2.0e-103 381.7 592 43.8
AagrBONN_evm.TU.Sc2ySwM_344.1826 Anthoceros agrestis HOM05D003502 ORTHO05D004250 9.2e-93 346.3 799 32.7
Cpa.g.c41347 Carica papaya HOM05D003502 ORTHO05D004250 3.5e-92 344.4 321 60.1
Mapoly0102s0001 Marchantia polymorpha HOM05D003502 ORTHO05D004250 4.7e-89 334.0 805 32.4
Pp3c6_25960 Physcomitrium patens HOM05D003502 ORTHO05D004250 7.1e-85 320.1 806 31.6
SEGI_34091 Sequoiadendron giganteum HOM05D003502 ORTHO05D004250 9.3e-77 293.1 453 40.6
SEGI_11487 Sequoiadendron giganteum HOM05D003502 ORTHO05D004250 1.2e-76 292.7 453 40.4
ECA248G0871 Erigeron canadensis HOM05D003502 ORTHO05D004250 9.6e-74 283.1 728 32.1
CDE06G0571 Ceratophyllum demersum HOM05D003502 ORTHO05D004250 1.6e-73 282.3 584 35.1
BcaC05g27448 Brassica carinata HOM05D003502 ORTHO05D004250 6.2e-73 280.4 313 50.8
BcaC01g01219 Brassica carinata HOM05D003502 ORTHO05D004250 3.2e-61 241.5 274 48.9
Cpa.g.sc794.1 Carica papaya HOM05D003502 ORTHO05D004250 3.2e-45 188.3 218 51.4
Lsat_1_v5_gn_6_110460 Lactuca sativa HOM05D003502 ORTHO05D004250 1.1e-34 153.3 150 56.7
Lj3C923G18 Lonicera japonica HOM05D003502 ORTHO05D004250 1.8e-32 146.0 103 72.8
ECA248G3707 Erigeron canadensis HOM05D003502 ORTHO05D004250 2.4e-32 145.6 194 44.3
ECA247G1432 Erigeron canadensis HOM05D003502 ORTHO05D004250 7.2e-29 134.0 725 25.7
HanXRQChr05g0148841 Helianthus annuus HOM05D003502 ORTHO05D004250 1.4e-24 119.8 175 41.1
PSO419G0001 Papaver somniferum HOM05D003502 ORTHO05D004250 1.6e-23 116.3 86 64.0
Lj2g0016050 Lotus japonicus HOM05D003502 ORTHO05D004250 3.8e-22 111.7 138 51.4
BolC4t25335H Brassica oleracea HOM05D000236 ORTHO05D005787 3.2e-21 108.6 172 41.3
HanXRQChr16g0510941 Helianthus annuus HOM05D003502 ORTHO05D004250 6.1e-20 104.4 77 67.5
EL10Ac7g17066 Beta vulgaris HOM05D003502 ORTHO05D004250 2.3e-19 102.4 104 51.9
COL.COLO4_28859 Corchorus olitorius HOM05D003502 ORTHO05D004250 4.0e-19 101.7 79 70.9
Pp3c5_3010 Physcomitrium patens HOM05D003502 ORTHO05D004250 1.2e-18 100.1 181 34.3
TAR624G1438 Trochodendron aralioides HOM05D003502 ORTHO05D004250 2.8e-17 95.5 66 71.2
Cpa.g.c44189 Carica papaya HOM05D003502 ORTHO05D004250 2.1e-12 79.3 50 76.0
Psat7g150800 Pisum sativum HOM05D001894 ORTHO05D001752 4.0e-11 75.1 78 56.4
Gohir.A05G408850 Gossypium hirsutum HOM05D003502 ORTHO05D004250 8.9e-11 73.9 63 58.7
EL10Ac9g20663 Beta vulgaris HOM05D003502 ORTHO05D004250 5.7e-10 71.2 76 57.9
RcHm_v2.0_Chr1g0381531 Rosa chinensis HOM05D001081 ORTHO05D004708 2.8e-09 68.9 126 35.7
HPP92_008321 Vanilla planifolia HOM05D003502 ORTHO05D004250 3.1e-08 65.5 50 68.0
Glyma.20G069750 Glycine max HOM05D003502 ORTHO05D004250 7.0e-08 64.3 59 59.3
FvH4_7g33670 Fragaria vesca HOM05D003502 ORTHO05D004250 2.0e-07 62.8 65 58.5
FvH4_7g33641 Fragaria vesca HOM05D003502 ORTHO05D004250 3.5e-07 62.0 61 59.0


User provided reference genes

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