Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g08961 Fragaria vesca HOM05D005705 ORTHO05D007152 1.2e-191 672.9 329 100.0
FAN18G0862 Fragaria x ananassa HOM05D005705 ORTHO05D007152 3.6e-167 591.7 306 95.1
FAN13G0195 Fragaria x ananassa HOM05D005705 ORTHO05D007152 1.0e-166 590.1 302 95.7
RcHm_v2.0_Chr7g0189351 Rosa chinensis HOM05D005705 ORTHO05D007152 1.1e-163 580.1 299 95.3
FAN08G2466 Fragaria x ananassa HOM05D005705 ORTHO05D007152 1.4e-163 579.7 309 92.9
FAN04G2238 Fragaria x ananassa HOM05D005705 ORTHO05D007152 5.6e-136 488.0 315 80.3
Manes.06G123000 Manihot esculenta HOM05D005705 ORTHO05D007152 1.5e-133 479.9 275 81.8
CiPaw.11G003500 Carya illinoinensis HOM05D005705 ORTHO05D007152 1.7e-129 466.5 273 80.6
Nn4g22220 Nelumbo nucifera HOM05D005705 ORTHO05D007152 3.9e-129 465.3 273 79.9
MD14G1151500 Malus domestica HOM05D005705 ORTHO05D007152 1.2e-127 460.3 272 80.5
Atru.chr6.1874 Acer truncatum HOM05D005705 ORTHO05D007152 3.6e-127 458.8 277 78.7
Dinv23185 Davidia involucrata HOM05D005705 ORTHO05D007152 4.7e-127 458.4 294 75.5
VMungo1309G0782 Vigna mungo HOM05D005705 ORTHO05D007152 4.7e-127 458.4 273 81.0
Phvul.009G162600 Phaseolus vulgaris HOM05D005705 ORTHO05D007152 1.4e-126 456.8 273 81.0
Potri.015G101300 Populus trichocarpa HOM05D005705 ORTHO05D007152 1.8e-126 456.4 277 76.2
Haze_07188 Corylus avellana HOM05D005705 ORTHO05D007152 2.3e-126 456.1 286 75.9
Aqoxy3G01676 Aquilegia oxysepala HOM05D005705 ORTHO05D007152 4.0e-126 455.3 263 81.4
THA.LOC104811568 Tarenaya hassleriana HOM05D005705 ORTHO05D007152 1.2e-125 453.8 262 80.2
Dinv11204 Davidia involucrata HOM05D005705 ORTHO05D007152 3.4e-125 452.2 275 78.5
Prupe.5G146600 Prunus persica HOM05D005705 ORTHO05D007152 7.5e-125 451.1 272 79.4
TAR374G1739 Trochodendron aralioides HOM05D005705 ORTHO05D007152 4.9e-124 448.4 273 79.1
Solyc03g097550.3 Solanum lycopersicum HOM05D005705 ORTHO05D007152 8.3e-124 447.6 274 78.8
Eucgr.B00079 Eucalyptus grandis HOM05D005705 ORTHO05D007152 1.9e-123 446.4 263 79.5
Sopen03g028300 Solanum pennellii HOM05D005705 ORTHO05D007152 1.9e-123 446.4 274 78.5
GSVIVG01008591001 Vitis vinifera HOM05D005705 ORTHO05D007152 1.9e-123 446.4 263 79.5
Sabra15G0121700 Salix brachista HOM05D005705 ORTHO05D007152 3.2e-123 445.7 277 74.4
CAN.G732.1 Capsicum annuum HOM05D005705 ORTHO05D007152 7.1e-123 444.5 274 78.5
CsaV3_1G000320 Cucumis sativus L. HOM05D005705 ORTHO05D007152 9.2e-123 444.1 261 79.3
Nitab4.5_0001332g0070 Nicotiana tabacum HOM05D005705 ORTHO05D007152 9.2e-123 444.1 274 79.6
Eucgr.B00082 Eucalyptus grandis HOM05D005705 ORTHO05D007152 1.6e-122 443.4 263 79.1
Gorai.003G119300 Gossypium raimondii HOM05D005705 ORTHO05D007152 2.1e-122 443.0 263 76.4
Lalb_Chr08g0237371 Lupinus albus HOM05D005705 ORTHO05D007152 2.1e-122 443.0 273 79.1
Nitab4.5_0003383g0010 Nicotiana tabacum HOM05D005705 ORTHO05D007152 2.1e-122 443.0 274 79.2
Ciclev10031733m.g Citrus clementina HOM05D005705 ORTHO05D007152 2.7e-122 442.6 263 79.1
CANSAT80G2532 Cannabis sativa HOM05D005705 ORTHO05D007152 3.5e-122 442.2 286 75.9
Medtr3g098940 Medicago truncatula HOM05D005705 ORTHO05D007152 6.0e-122 441.4 273 78.8
Lj1g0017194 Lotus japonicus HOM05D005705 ORTHO05D007152 7.8e-122 441.0 275 78.9
vmacro19145 Vaccinium macrocarpon HOM05D005705 ORTHO05D007152 7.8e-122 441.0 274 78.1
Peaxi162Scf00516g00214 Petunia axillaris HOM05D005705 ORTHO05D007152 1.0e-121 440.7 275 77.8
ClCG06G018130 Citrullus lanatus HOM05D005705 ORTHO05D007152 1.7e-121 439.9 274 77.4
Cc08_g11650 Coffea canephora HOM05D005705 ORTHO05D007152 1.7e-121 439.9 265 77.7
Gohir.D03G113100 Gossypium hirsutum HOM05D005705 ORTHO05D007152 1.1e-120 437.2 263 76.0
Glyma.06G167100 Glycine max HOM05D005705 ORTHO05D007152 1.5e-120 436.8 273 77.3
Psat5g053040 Pisum sativum HOM05D005705 ORTHO05D007152 1.5e-120 436.8 274 77.7
MD06G1136700 Malus domestica HOM05D005705 ORTHO05D007152 3.3e-120 435.6 272 77.6
arahy.Tifrunner.gnm1.ann1.5ZS0BP Arachis hypogaea HOM05D005705 ORTHO05D007152 9.5e-120 434.1 278 77.0
TWI14G0152 Tripterygium wilfordii HOM05D005705 ORTHO05D007152 9.5e-120 434.1 277 74.0
Ca_16064_v3 Cicer arietinum L. HOM05D005705 ORTHO05D007152 1.2e-119 433.7 263 79.1
Eucgr.F01610 Eucalyptus grandis HOM05D005705 ORTHO05D007152 1.2e-119 433.7 263 77.6
Migut.D01284 Erythranthe guttata HOM05D005705 ORTHO05D007152 2.8e-119 432.6 274 75.9
Thecc.03G135500 Theobroma cacao HOM05D005705 ORTHO05D007152 2.8e-119 432.6 263 76.0
Rhsim08G0193700 Rhododendron simsii HOM05D005705 ORTHO05D007152 1.1e-118 430.6 274 75.5
PSO017G1135 Papaver somniferum HOM05D005705 ORTHO05D007152 2.4e-118 429.5 285 72.3
PSO478G3581 Papaver somniferum HOM05D005705 ORTHO05D007152 8.9e-118 427.6 285 72.3
PGR044G0296 Punica granatum HOM05D005705 ORTHO05D007152 8.9e-118 427.6 265 76.2
Actinidia18330 Actinidia chinensis HOM05D005705 ORTHO05D007152 1.5e-117 426.8 280 72.9
ECA247G0704 Erigeron canadensis HOM05D005705 ORTHO05D007152 4.4e-117 425.2 274 77.0
Eucgr.K02692 Eucalyptus grandis HOM05D005705 ORTHO05D007152 7.6e-117 424.5 278 73.0
DCAR_026236 Daucus carota HOM05D005705 ORTHO05D007152 2.4e-115 419.5 274 73.4
HanXRQChr02g0034161 Helianthus annuus HOM05D005705 ORTHO05D007152 2.4e-115 419.5 274 74.5
Sc22g0003610 Simmondsia chinensis HOM05D005705 ORTHO05D007152 3.2e-115 419.1 293 67.6
Lsat_1_v5_gn_1_32681 Lactuca sativa HOM05D005705 ORTHO05D007152 7.1e-115 417.9 272 76.1
Aa31LG3G7650 Aethionema arabicum HOM05D005705 ORTHO05D007152 4.6e-114 415.2 274 71.5
arahy.Tifrunner.gnm1.ann1.U15GQW Arachis hypogaea HOM05D005705 ORTHO05D007152 1.1e-112 410.6 322 65.8
Zm00001eb241970 Zea mays HOM05D005705 ORTHO05D007152 2.5e-112 409.5 261 72.8
Lj5A92G46 Lonicera japonica HOM05D005705 ORTHO05D007152 7.3e-112 407.9 327 63.6
Sp6g13350 Schrenkiella parvula HOM05D005705 ORTHO05D007152 6.9e-110 401.4 292 67.5
BcaC03g14622 Brassica carinata HOM05D005705 ORTHO05D007152 1.5e-109 400.2 264 73.5
C03p19170 Brassica napus HOM05D005705 ORTHO05D007152 1.5e-109 400.2 266 72.9
BcaC01g06077 Brassica carinata HOM05D005705 ORTHO05D007152 2.0e-109 399.8 266 72.2
Thhalv10013761m.g Eutrema salsugineum HOM05D005705 ORTHO05D007152 4.4e-109 398.7 263 72.2
AL8G25400 Arabidopsis lyrata HOM05D005705 ORTHO05D007152 5.8e-109 398.3 263 73.0
ATR0582G303 Amborella trichopoda HOM05D005705 ORTHO05D007152 9.9e-109 397.5 332 60.2
AT5G51140 Arabidopsis thaliana HOM05D005705 ORTHO05D007152 1.3e-108 397.1 263 72.2
BolC2t08194H Brassica oleracea HOM05D005705 ORTHO05D007152 1.3e-108 397.1 266 73.7
BcaC01g06097 Brassica carinata HOM05D005705 ORTHO05D007152 2.2e-108 396.4 266 72.6
A02p12470 Brassica napus HOM05D005705 ORTHO05D007152 2.9e-108 396.0 267 73.0
CARHR256910 Cardamine hirsuta HOM05D005705 ORTHO05D007152 2.9e-108 396.0 263 72.2
TPR.G35256 Trifolium pratense HOM05D005705 ORTHO05D007152 3.8e-108 395.6 273 72.5
BraA03t10919Z Brassica rapa HOM05D005705 ORTHO05D007152 4.9e-108 395.2 293 67.2
C02p20570 Brassica napus HOM05D005705 ORTHO05D007152 6.4e-108 394.8 265 73.2
BraA02t06310Z Brassica rapa HOM05D005705 ORTHO05D007152 8.4e-108 394.4 267 72.7
EL10Ac5g11353 Beta vulgaris HOM05D005705 ORTHO05D007152 1.1e-107 394.0 287 67.9
Carub.0008s1118 Capsella rubella HOM05D005705 ORTHO05D007152 1.1e-107 394.0 262 72.5
BolC3t14305H Brassica oleracea HOM05D005705 ORTHO05D007152 5.4e-107 391.7 267 72.3
A03p16280 Brassica napus HOM05D005705 ORTHO05D007152 7.1e-107 391.3 243 76.5
PGSC0003DMG400031733 Solanum tuberosum HOM05D005705 ORTHO05D007152 2.3e-105 386.3 229 79.5
QL10p001835 Quercus lobata HOM05D005705 ORTHO05D007152 6.6e-105 384.8 412 51.7
MELO3C026185.2 Cucumis melo HOM05D005705 ORTHO05D007152 8.7e-105 384.4 292 65.8
ECA247G2912 Erigeron canadensis HOM05D005705 ORTHO05D007152 4.3e-104 382.1 265 72.5
Gohir.A03G053960 Gossypium hirsutum HOM05D005705 ORTHO05D007152 7.3e-104 381.3 221 77.8
CSS0038740 Camellia sinensis var. sinensis HOM05D005705 ORTHO05D007152 9.6e-104 380.9 299 65.2
Gohir.A03G053840 Gossypium hirsutum HOM05D005705 ORTHO05D007152 2.1e-103 379.8 273 67.4
Hma1.2p1_0168F.1_g074310 Hydrangea macrophylla HOM05D005705 ORTHO05D007152 3.8e-100 369.0 278 68.3
Sed0013194 Sechium edule HOM05D005705 ORTHO05D007152 5.1e-97 358.6 227 77.1
HPP92_015136 Vanilla planifolia HOM05D005705 ORTHO05D007152 9.0e-94 347.8 221 72.4
Duzib084G0308 Durio zibethinus HOM05D005705 ORTHO05D007152 2.2e-92 343.2 218 72.0
Nn4g22223 Nelumbo nucifera HOM05D005705 ORTHO05D007152 4.9e-92 342.0 273 62.6
Mapoly0190s0007 Marchantia polymorpha HOM05D005705 ORTHO05D007152 1.2e-90 337.4 267 60.7
RcHm_v2.0_Chr7g0189401 Rosa chinensis HOM05D005705 ORTHO05D007152 1.3e-89 334.0 201 82.6
Eucgr.K02689 Eucalyptus grandis HOM05D005705 ORTHO05D007152 3.0e-89 332.8 260 64.2
PGR083G0448 Punica granatum HOM05D005705 ORTHO05D007152 5.3e-86 322.0 263 62.4
Pp3c10_5730 Physcomitrium patens HOM05D005705 ORTHO05D007152 1.5e-85 320.5 283 53.7
Oeu061128.1 Olea europaea HOM05D005705 ORTHO05D007152 5.1e-81 305.4 328 51.2
Eucgr.K02697 Eucalyptus grandis HOM05D005705 ORTHO05D007152 4.3e-80 302.4 281 56.6
AUR62029555 Chenopodium quinoa HOM05D005705 ORTHO05D007152 1.3e-79 300.8 264 57.2
AUR62034819 Chenopodium quinoa HOM05D005705 ORTHO05D007152 3.7e-79 299.3 293 52.9
Cpa.g.sc4.149 Carica papaya HOM05D005705 ORTHO05D007152 1.1e-78 297.7 157 83.4
SGA_v2.0_scaffold37G14637 Striga asiatica HOM05D005705 ORTHO05D007152 1.2e-77 294.3 274 55.1
Ah.11g046430 Amaranthus hybridus HOM05D005705 ORTHO05D007152 8.5e-76 288.1 263 56.7
MSTRG.4614 Avicennia marina HOM05D005705 ORTHO05D007152 1.1e-64 251.1 163 77.3
CDE02G4520 Ceratophyllum demersum HOM05D005705 ORTHO05D007152 1.1e-64 251.1 167 72.5
MBI11_g13060_MAGBIO Magnolia biondii HOM05D005705 ORTHO05D007152 7.7e-61 238.4 135 82.2
Os02g0512300 Oryza sativa ssp. japonica HOM05D005705 ORTHO05D007152 8.5e-60 235.0 130 80.8
AagrBONN_evm.TU.Sc2ySwM_362.2453 Anthoceros agrestis HOM05D005705 ORTHO05D007152 2.9e-52 209.9 168 60.1
Cre17.g702400 Chlamydomonas reinhardtii HOM05D005705 ORTHO05D007152 1.8e-46 190.7 293 39.6
Hund10107 Selenicereus undatus HOM05D005705 ORTHO05D007152 8.5e-44 181.8 208 48.6
Cfa023901 Carpinus fangiana HOM05D005705 ORTHO05D007152 1.4e-41 174.5 282 37.2
Haze_26548 Corylus avellana HOM05D005705 ORTHO05D007152 7.5e-40 168.7 261 37.9
Haze_27069 Corylus avellana HOM05D005705 ORTHO05D007152 7.5e-40 168.7 264 37.1
Pp3c10_5680 Physcomitrium patens HOM05D005705 ORTHO05D007152 1.7e-39 167.5 160 53.1
MCO02G106 Micromonas commoda HOM05D005705 ORTHO05D007152 6.1e-34 149.1 179 44.1
CBR_g48327 Chara braunii HOM05D005705 ORTHO05D007152 1.0e-33 148.3 153 52.9
Cpa.g.sc4.148 Carica papaya HOM05D005705 ORTHO05D007152 2.8e-26 123.6 96 67.7
arahy.Tifrunner.gnm1.ann1.N812UT Arachis hypogaea HOM05D005705 ORTHO05D007152 1.7e-23 114.4 201 37.3
arahy.Tifrunner.gnm1.ann1.MH3CCF Arachis hypogaea HOM05D001440 ORTHO05D007152 1.0e-20 105.1 65 73.8
arahy.Tifrunner.gnm1.ann1.5M4P4Y Arachis hypogaea HOM05D005705 ORTHO05D007152 2.3e-20 104.0 64 75.0
TPR.G32502 Trifolium pratense HOM05D005855 ORTHO05D006406 8.6e-20 102.1 75 68.0
arahy.Tifrunner.gnm1.ann1.WM01PM Arachis hypogaea HOM05D001440 ORTHO05D013218 3.3e-19 100.1 65 73.8
arahy.Tifrunner.gnm1.ann1.DA2DAM Arachis hypogaea HOM05D005705 ORTHO05D007152 1.2e-18 98.2 64 71.9
AagrBONN_evm.TU.Sc2ySwM_368.1098 Anthoceros agrestis HOM05D005705 ORTHO05D007152 2.1e-13 80.9 50 76.0
Gohir.D03G113075 Gossypium hirsutum HOM05D005705 ORTHO05D007152 6.2e-10 69.3 44 75.0
MCO13G347 Micromonas commoda HOM05D005705 ORTHO05D007152 2.0e-08 64.3 253 26.1
Pp3s46_330 Physcomitrium patens HOM05D007020 ORTHO05D008935 4.4e-08 63.2 210 26.7
BraA03t13977Z Brassica rapa HOM05D006791 ORTHO05D008221 1.3e-07 61.6 129 30.2
VMungo0720G1069 Vigna mungo HOM05D006791 ORTHO05D008221 2.9e-07 60.5 154 24.0
Aqoxy7G02243 Aquilegia oxysepala HOM05D006791 ORTHO05D008221 3.7e-07 60.1 228 26.3
A03p48770 Brassica napus HOM05D006791 ORTHO05D008221 6.4e-07 59.3 129 29.5
BolC7t45202H Brassica oleracea HOM05D006791 ORTHO05D008221 8.3e-07 58.9 110 32.7
MCO01G778 Micromonas commoda HOM05D007020 ORTHO05D008935 4.1e-06 56.6 250 24.8
Phvul.007G093000 Phaseolus vulgaris HOM05D006791 ORTHO05D008221 5.4e-06 56.2 138 24.6


User provided reference genes

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