Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g07010 Fragaria vesca HOM05D007098 ORTHO05D008793 2.4e-224 782.7 715 100.0
FAN18G2243 Fragaria x ananassa HOM05D007098 ORTHO05D008793 8.2e-217 757.7 716 98.2
FAN13G2898 Fragaria x ananassa HOM05D007098 ORTHO05D008793 5.7e-210 734.9 716 94.3
FAN04G0983 Fragaria x ananassa HOM05D007098 ORTHO05D008793 1.1e-202 710.7 718 86.2
RcHm_v2.0_Chr7g0191671 Rosa chinensis HOM05D007098 ORTHO05D008793 8.8e-195 684.5 717 93.2
MD06G1160200 Malus domestica HOM05D007098 ORTHO05D008793 6.8e-163 578.6 720 84.7
Prupe.5G160200 Prunus persica HOM05D007098 ORTHO05D008793 1.9e-152 543.9 718 82.0
Haze_07291 Corylus avellana HOM05D007098 ORTHO05D008793 1.5e-133 481.1 727 79.2
Manes.06G113500 Manihot esculenta HOM05D007098 ORTHO05D008793 3.4e-130 469.9 712 72.3
Thecc.03G120500 Theobroma cacao HOM05D007098 ORTHO05D008793 7.6e-130 468.8 718 75.6
ClCG03G003340 Citrullus lanatus HOM05D007098 ORTHO05D008793 2.2e-129 467.2 702 77.4
QL10p005624 Quercus lobata HOM05D007098 ORTHO05D008793 2.7e-127 460.3 680 82.2
Hma1.2p1_0014F.1_g009950 Hydrangea macrophylla HOM05D007098 ORTHO05D008793 3.9e-126 456.4 627 83.1
Dinv11119 Davidia involucrata HOM05D002040 ORTHO05D002502 1.1e-125 454.9 720 74.2
Cpa.g.sc4.42 Carica papaya HOM05D007098 ORTHO05D008793 3.7e-124 449.9 617 81.8
CiPaw.11G013600 Carya illinoinensis HOM05D007098 ORTHO05D008793 6.2e-124 449.1 622 83.0
Gorai.001G062100 Gossypium raimondii HOM05D007098 ORTHO05D008793 1.5e-122 444.5 631 80.7
CsaV3_1G009150 Cucumis sativus L. HOM05D007098 ORTHO05D008793 2.6e-122 443.7 623 78.3
Gohir.D07G058600 Gossypium hirsutum HOM05D007098 ORTHO05D008793 2.2e-121 440.7 632 80.2
Ah.08g218330 Amaranthus hybridus HOM05D007098 ORTHO05D008793 4.9e-121 439.5 688 77.8
Gohir.A07G054300 Gossypium hirsutum HOM05D007098 ORTHO05D008793 8.4e-121 438.7 632 79.9
EL10Ac7g18049 Beta vulgaris HOM05D007098 ORTHO05D008793 2.1e-119 434.1 671 76.5
Sabra12G0066500 Salix brachista HOM05D007098 ORTHO05D008793 3.5e-119 433.3 623 80.9
Sed0010608 Sechium edule HOM05D007098 ORTHO05D008793 3.5e-119 433.3 620 81.3
TWI39G0887 Tripterygium wilfordii HOM05D007098 ORTHO05D008793 4.6e-119 433.0 697 75.9
CANSAT80G2237 Cannabis sativa HOM05D007098 ORTHO05D008793 1.0e-118 431.8 724 77.5
Atru.chr9.986 Acer truncatum HOM05D007098 ORTHO05D008793 4.3e-117 426.4 712 76.3
MELO3C002322.2 Cucumis melo HOM05D007098 ORTHO05D008793 1.6e-116 424.5 715 73.6
Potri.012G091800 Populus trichocarpa HOM05D007098 ORTHO05D008793 2.8e-116 423.7 622 80.9
Duzib205G2031 Durio zibethinus HOM05D007098 ORTHO05D008793 2.4e-115 420.6 624 80.6
Nn5g28372 Nelumbo nucifera HOM05D007098 ORTHO05D008793 7.6e-114 415.6 674 77.3
Ciclev10019054m.g Citrus clementina HOM05D007098 ORTHO05D008793 2.9e-113 413.7 628 79.3
Lj2g0008135 Lotus japonicus HOM05D007098 ORTHO05D008793 8.4e-113 412.1 619 78.8
AUR62001258 Chenopodium quinoa HOM05D007098 ORTHO05D008793 2.5e-112 410.6 617 80.7
MSTRG.9703 Avicennia marina HOM05D007098 ORTHO05D008793 1.6e-111 407.9 619 78.5
AUR62025750 Chenopodium quinoa HOM05D007098 ORTHO05D008793 1.6e-111 407.9 616 80.0
Glyma.12G037500 Glycine max HOM05D007098 ORTHO05D008793 2.3e-110 404.1 617 78.4
TAR371G0113 Trochodendron aralioides HOM05D007098 ORTHO05D008793 2.3e-110 404.1 614 81.1
GSVIVG01007576001 Vitis vinifera HOM05D007098 ORTHO05D008793 3.9e-110 403.3 668 78.9
Cfa018906 Carpinus fangiana HOM05D007098 ORTHO05D008793 1.1e-109 401.7 560 85.9
Glyma.11G111200 Glycine max HOM05D007098 ORTHO05D008793 1.6e-108 397.9 620 77.7
THA.LOC104824999 Tarenaya hassleriana HOM05D007098 ORTHO05D008793 9.0e-107 392.1 717 67.9
Cc04_g10690 Coffea canephora HOM05D007098 ORTHO05D008793 1.2e-106 391.7 623 77.7
Lalb_Chr10g0098821 Lupinus albus HOM05D007098 ORTHO05D008793 1.0e-105 388.7 629 76.8
arahy.Tifrunner.gnm1.ann1.RHK9HC Arachis hypogaea HOM05D007098 ORTHO05D008793 2.2e-105 387.5 631 76.7
PGSC0003DMG400015232 Solanum tuberosum HOM05D007098 ORTHO05D008793 2.9e-105 387.1 618 77.2
Actinidia16202 Actinidia chinensis HOM05D007098 ORTHO05D008793 3.8e-105 386.7 717 68.2
Rhsim08G0182900 Rhododendron simsii HOM05D007098 ORTHO05D008793 1.1e-104 385.2 561 83.2
arahy.Tifrunner.gnm1.ann1.PW5CDL Arachis hypogaea HOM05D007098 ORTHO05D008793 1.4e-104 384.8 631 76.4
Carub.0008s1032 Capsella rubella HOM05D007098 ORTHO05D008793 1.4e-104 384.8 620 76.9
HanXRQChr09g0272771 Helianthus annuus HOM05D007098 ORTHO05D008793 7.2e-104 382.5 710 67.5
MBI11_g46348_MAGBIO Magnolia biondii HOM05D007098 ORTHO05D008793 1.6e-103 381.3 621 78.7
CSS0030055 Camellia sinensis var. sinensis HOM05D007098 ORTHO05D008793 2.7e-103 380.6 420 77.1
Phvul.011G039200 Phaseolus vulgaris HOM05D007098 ORTHO05D008793 2.7e-103 380.6 621 76.0
Peaxi162Scf00089g00927 Petunia axillaris HOM05D007098 ORTHO05D008793 3.6e-103 380.2 618 78.8
Aa31LG3G5960 Aethionema arabicum HOM05D007098 ORTHO05D008793 4.6e-103 379.8 622 76.2
vmacro19257 Vaccinium macrocarpon HOM05D007098 ORTHO05D008793 7.9e-103 379.0 580 80.3
Dinv38489 Davidia involucrata HOM05D007098 ORTHO05D008793 8.8e-102 375.6 410 78.0
Thhalv10012796m.g Eutrema salsugineum HOM05D007098 ORTHO05D008793 8.8e-102 375.6 622 76.2
AT5G50280 Arabidopsis thaliana HOM05D007098 ORTHO05D008793 2.5e-101 374.0 623 75.9
CSS0038177 Camellia sinensis var. sinensis HOM05D007098 ORTHO05D008793 4.3e-101 373.2 601 77.4
AL8G24320 Arabidopsis lyrata HOM05D007098 ORTHO05D008793 2.4e-99 367.5 725 68.0
CARHR258300 Cardamine hirsuta HOM05D007098 ORTHO05D008793 3.1e-99 367.1 626 74.3
Sp6g12370 Schrenkiella parvula HOM05D007098 ORTHO05D008793 5.3e-99 366.3 621 74.6
Sc22g0003940 Simmondsia chinensis HOM05D007098 ORTHO05D008793 6.9e-99 365.9 668 73.4
BolC3t15668H Brassica oleracea HOM05D007098 ORTHO05D008793 1.2e-98 365.2 619 70.3
SGA_v2.0_scaffold45G17096 Striga asiatica HOM05D006560 ORTHO05D008164 1.5e-98 364.8 625 70.9
BcaC01g04822 Brassica carinata HOM05D007098 ORTHO05D008793 2.6e-98 364.0 618 70.7
A03p27750 Brassica napus HOM05D007098 ORTHO05D008793 3.4e-98 363.6 617 70.5
Nitab4.5_0001360g0150 Nicotiana tabacum HOM05D007098 ORTHO05D008793 1.0e-97 362.1 618 77.7
BraA03t11986Z Brassica rapa HOM05D007098 ORTHO05D008793 2.2e-97 360.9 619 70.1
Psat2g130240 Pisum sativum HOM05D007098 ORTHO05D008793 2.2e-97 360.9 620 76.1
BcaB01g02904 Brassica carinata HOM05D007098 ORTHO05D008793 2.9e-97 360.5 619 70.3
Migut.D02039 Erythranthe guttata HOM05D007098 ORTHO05D008793 8.5e-97 359.0 621 75.4
Sopen03g030770 Solanum pennellii HOM05D007098 ORTHO05D008793 8.5e-97 359.0 618 77.0
C03p33470 Brassica napus HOM05D007098 ORTHO05D008793 3.2e-96 357.1 618 70.2
TPR.G24468 Trifolium pratense HOM05D007098 ORTHO05D008793 9.4e-96 355.5 619 74.6
Nitab4.5_0006717g0020 Nicotiana tabacum HOM05D007098 ORTHO05D008793 2.1e-95 354.4 619 76.6
PSO063G4104 Papaver somniferum HOM05D007098 ORTHO05D008793 2.3e-94 350.9 621 75.0
PSO782G3618 Papaver somniferum HOM05D007098 ORTHO05D008793 2.3e-94 350.9 624 75.2
SalBow1G0423 Salvia bowleyana HOM05D007098 ORTHO05D008793 6.7e-94 349.4 617 68.9
Glyma.02G116500 Glycine max HOM05D007098 ORTHO05D008793 1.1e-93 348.6 626 74.1
VMungo1127G2011 Vigna mungo HOM05D007098 ORTHO05D008793 3.7e-92 343.6 623 74.2
Medtr5g045490 Medicago truncatula HOM05D007098 ORTHO05D008793 1.1e-91 342.0 619 75.0
Solyc03g111650.4 Solanum lycopersicum HOM05D007098 ORTHO05D008793 1.5e-90 338.2 618 60.2
arahy.Tifrunner.gnm1.ann1.L7HRZC Arachis hypogaea HOM05D007098 ORTHO05D008793 2.5e-88 330.9 284 61.3
CDE09G0597 Ceratophyllum demersum HOM05D007098 ORTHO05D008793 9.4e-88 328.9 274 61.3
ECA232G2468 Erigeron canadensis HOM05D001195 ORTHO05D001138 1.1e-85 322.0 415 63.1
Hund21512 Selenicereus undatus HOM05D007098 ORTHO05D008793 9.7e-85 318.9 269 58.7
Phvul.003G042600 Phaseolus vulgaris HOM05D007098 ORTHO05D008793 8.2e-84 315.8 626 71.4
VMungo1215G0824 Vigna mungo HOM05D007098 ORTHO05D008793 1.4e-83 315.1 274 59.1
Lsat_1_v5_gn_4_78280 Lactuca sativa HOM05D007098 ORTHO05D008793 2.4e-83 314.3 629 67.6
Eucgr.B00165 Eucalyptus grandis HOM05D007098 ORTHO05D008793 1.2e-82 312.0 500 86.0
Lj5A101T108 Lonicera japonica HOM05D007098 ORTHO05D008793 5.9e-82 309.7 220 66.4
Ca_04973_v3 Cicer arietinum L. HOM05D007098 ORTHO05D008793 3.6e-79 300.4 400 70.8
ATR0824G168 Amborella trichopoda HOM05D007098 ORTHO05D008793 9.7e-77 292.4 636 69.8
CAN.G472.49 Capsicum annuum HOM05D007098 ORTHO05D008793 5.4e-59 233.4 486 82.5
HPP92_024236 Vanilla planifolia HOM05D007098 ORTHO05D008793 8.6e-57 226.1 506 78.1
SEGI_05165 Sequoiadendron giganteum HOM05D007098 ORTHO05D008793 2.6e-53 214.5 335 63.3
Glyma.01G059100 Glycine max HOM05D007098 ORTHO05D008793 2.9e-52 211.1 502 78.1
Os05g0294600 Oryza sativa ssp. japonica HOM05D007098 ORTHO05D008793 4.7e-47 193.7 527 69.1
Ca_26530_v3 Cicer arietinum L. HOM05D005706 ORTHO05D008793 8.1e-39 166.4 237 86.5
Cpa.g.sc4.27 Carica papaya HOM05D006000 ORTHO05D008793 4.9e-36 157.1 122 64.8
Ca_30971_v3 Cicer arietinum L. HOM05D007098 ORTHO05D008793 9.9e-29 132.9 176 46.0
Mapoly0023s0082 Marchantia polymorpha HOM05D007098 ORTHO05D008793 5.4e-27 127.1 212 33.0
DCAR_021600 Daucus carota HOM05D007098 ORTHO05D008793 1.5e-24 119.0 72 84.7
Lj5C101T15 Lonicera japonica HOM05D007098 ORTHO05D008793 4.3e-24 117.5 72 81.9
AagrBONN_evm.TU.Sc2ySwM_228.5130 Anthoceros agrestis HOM05D007098 ORTHO05D008793 4.8e-23 114.0 200 31.5
Duzib084G0201 Durio zibethinus HOM05D007098 ORTHO05D008793 3.4e-21 107.8 79 72.2
Hma1.2p1_0014F.1_g009960 Hydrangea macrophylla HOM05D007098 ORTHO05D008793 3.4e-21 107.8 68 85.3
MBI11_g46065_MAGBIO Magnolia biondii HOM05D007098 ORTHO05D008793 4.9e-20 104.0 72 75.0
Zm00001eb154110 Zea mays HOM05D007098 ORTHO05D008793 3.3e-16 91.3 429 78.8
arahy.Tifrunner.gnm1.ann1.0Z4KK5 Arachis hypogaea HOM05D007098 ORTHO05D008793 2.7e-10 71.6 55 65.5
ClCG03G003360 Citrullus lanatus HOM05D007098 ORTHO05D008793 2.7e-10 71.6 63 58.7
Aa31LG8G16030 Aethionema arabicum HOM05D003056 ORTHO05D003422 3.7e-07 61.2 160 25.6
PGR083G1300 Punica granatum HOM05D005390 ORTHO05D007086 4.0e-06 57.8 59 50.8
Sc10g0007430 Simmondsia chinensis HOM05D006749 ORTHO05D008352 4.0e-06 57.8 123 30.9


User provided reference genes

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