Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g03180 Fragaria vesca HOM05D007428 ORTHO05D009308 3.0e-31 137.9 70 100.0
FAN04G2816 Fragaria x ananassa HOM05D007428 ORTHO05D009308 3.0e-31 137.9 70 100.0
FAN13G2357 Fragaria x ananassa HOM05D007428 ORTHO05D009308 3.0e-31 137.9 70 100.0
FAN18G4254 Fragaria x ananassa HOM05D007428 ORTHO05D009308 3.0e-31 137.9 70 100.0
RcHm_v2.0_Chr7g0196601 Rosa chinensis HOM05D007428 ORTHO05D009308 1.1e-30 136.0 70 98.6
Prupe.5G106400 Prunus persica HOM05D007428 ORTHO05D009308 5.1e-23 110.5 69 82.6
MD14G1111700 Malus domestica HOM05D007428 ORTHO05D009308 1.4e-20 102.4 70 77.1
Potri.001G099200 Populus trichocarpa HOM05D007428 ORTHO05D009308 2.0e-19 98.6 66 75.8
Sabra01G0074400 Salix brachista HOM05D007428 ORTHO05D009308 3.4e-19 97.8 66 75.8
Manes.02G017900 Manihot esculenta HOM05D007428 ORTHO05D009308 4.5e-19 97.4 66 75.8
CiPaw.11G129900 Carya illinoinensis HOM05D007428 ORTHO05D009308 5.9e-19 97.1 64 73.4
Atru.chr9.2117 Acer truncatum HOM05D007428 ORTHO05D009308 7.7e-19 96.7 66 75.8
Lalb_Chr25g0287261 Lupinus albus HOM05D007428 ORTHO05D009308 7.7e-19 96.7 59 81.4
GSVIVG01019416001 Vitis vinifera HOM05D007428 ORTHO05D009308 7.7e-19 96.7 67 74.6
CANSAT21G2180 Cannabis sativa HOM05D007428 ORTHO05D009308 1.3e-18 95.9 71 76.1
Rhsim02G0235600 Rhododendron simsii HOM05D007428 ORTHO05D009308 1.3e-18 95.9 67 71.6
ATR0661G028 Amborella trichopoda HOM05D007428 ORTHO05D009308 2.9e-18 94.7 69 71.0
MD06G1090900 Malus domestica HOM05D007428 ORTHO05D009308 2.9e-18 94.7 70 74.3
AUR62000169 Chenopodium quinoa HOM05D007428 ORTHO05D009308 3.8e-18 94.4 66 72.7
AUR62039842 Chenopodium quinoa HOM05D007428 ORTHO05D009308 3.8e-18 94.4 66 72.7
Nn6g32110 Nelumbo nucifera HOM05D007428 ORTHO05D009308 5.0e-18 94.0 69 69.6
Ciclev10023047m.g Citrus clementina HOM05D007428 ORTHO05D009308 6.5e-18 93.6 67 70.1
PSO782G0783 Papaver somniferum HOM05D007428 ORTHO05D009308 6.5e-18 93.6 68 72.1
QL12p031804 Quercus lobata HOM05D007428 ORTHO05D009308 8.5e-18 93.2 66 69.7
TAR374G0673 Trochodendron aralioides HOM05D007428 ORTHO05D009308 8.5e-18 93.2 69 68.1
Aa31LG9G500 Aethionema arabicum HOM05D007428 ORTHO05D009308 1.1e-17 92.8 69 71.0
Dinv38899 Davidia involucrata HOM05D007428 ORTHO05D009308 1.1e-17 92.8 67 71.6
MBI11_g02029_MAGBIO Magnolia biondii HOM05D007428 ORTHO05D009308 2.5e-17 91.7 69 69.6
Phvul.001G130100 Phaseolus vulgaris HOM05D007428 ORTHO05D009308 2.5e-17 91.7 60 76.7
TPR.G18241 Trifolium pratense HOM05D007428 ORTHO05D009308 3.2e-17 91.3 59 78.0
PGR031G0112 Punica granatum HOM05D007428 ORTHO05D009308 4.2e-17 90.9 66 71.2
Nn1g01671 Nelumbo nucifera HOM05D007428 ORTHO05D009308 5.5e-17 90.5 69 68.1
Duzib084G1020 Durio zibethinus HOM05D007428 ORTHO05D009308 7.2e-17 90.1 66 69.7
PGSC0003DMG400005826 Solanum tuberosum HOM05D007428 ORTHO05D009308 7.2e-17 90.1 64 73.4
MELO3C005713.2 Cucumis melo HOM05D007428 ORTHO05D009308 9.4e-17 89.7 69 65.2
CsaV3_5G002410 Cucumis sativus L. HOM05D007428 ORTHO05D009308 9.4e-17 89.7 69 65.2
ClCG01G002350 Citrullus lanatus HOM05D007428 ORTHO05D009308 1.2e-16 89.4 69 65.2
Glyma.19G137300 Glycine max HOM05D007428 ORTHO05D009308 1.6e-16 89.0 60 75.0
Gohir.D08G134500 Gossypium hirsutum HOM05D001458 ORTHO05D008462 1.6e-16 89.0 66 68.2
Medtr7g091260 Medicago truncatula HOM05D007428 ORTHO05D009308 1.6e-16 89.0 60 76.7
COL.COLO4_08363 Corchorus olitorius HOM05D007428 ORTHO05D009308 2.1e-16 88.6 64 68.8
Thhalv10028001m.g Eutrema salsugineum HOM05D007428 ORTHO05D009308 2.1e-16 88.6 66 71.2
Actinidia10608 Actinidia chinensis HOM05D007428 ORTHO05D009308 2.7e-16 88.2 66 68.2
EL10Ac4g10178 Beta vulgaris HOM05D007428 ORTHO05D009308 2.7e-16 88.2 66 69.7
FAN08G3453 Fragaria x ananassa HOM05D005196 ORTHO05D006107 2.7e-16 88.2 44 95.5
Solyc08g008120.4 Solanum lycopersicum HOM05D007428 ORTHO05D009308 2.7e-16 88.2 64 71.9
Sopen08g003980 Solanum pennellii HOM05D007428 ORTHO05D009308 2.7e-16 88.2 64 71.9
THA.LOC104809367 Tarenaya hassleriana HOM05D007428 ORTHO05D009308 2.7e-16 88.2 69 68.1
HPP92_003464 Vanilla planifolia HOM05D007428 ORTHO05D009308 2.7e-16 88.2 67 64.2
Aqoxy7G00179 Aquilegia oxysepala HOM05D007428 ORTHO05D009308 4.7e-16 87.4 67 64.2
PSO478G2995 Papaver somniferum HOM05D007428 ORTHO05D009308 4.7e-16 87.4 68 69.1
TAR375G0610 Trochodendron aralioides HOM05D007428 ORTHO05D009308 4.7e-16 87.4 64 68.8
Lj1g0002351 Lotus japonicus HOM05D007428 ORTHO05D009308 6.1e-16 87.0 60 73.3
Sp7g00480 Schrenkiella parvula HOM05D007428 ORTHO05D009308 6.1e-16 87.0 69 68.1
Cfa012244 Carpinus fangiana HOM05D007428 ORTHO05D009308 8.0e-16 86.7 65 70.8
Peaxi162Scf00102g01635 Petunia axillaris HOM05D007428 ORTHO05D009308 8.0e-16 86.7 59 74.6
Gohir.A08G114300 Gossypium hirsutum HOM05D007428 ORTHO05D009308 1.0e-15 86.3 66 68.2
Cfa012240 Carpinus fangiana HOM05D007428 ORTHO05D009308 1.8e-15 85.5 66 71.2
CiPaw.12G089300 Carya illinoinensis HOM05D007428 ORTHO05D009308 1.8e-15 85.5 61 70.5
Eucgr.D01813 Eucalyptus grandis HOM05D007428 ORTHO05D009308 1.8e-15 85.5 66 68.2
Carub.0007s3391 Capsella rubella HOM05D007428 ORTHO05D009308 2.3e-15 85.1 69 65.2
CSS0042206 Camellia sinensis var. sinensis HOM05D007428 ORTHO05D009308 3.0e-15 84.7 67 64.2
BcaB06g27627 Brassica carinata HOM05D007428 ORTHO05D009308 5.2e-15 84.0 66 66.7
BcaC02g08952 Brassica carinata HOM05D007428 ORTHO05D009308 5.2e-15 84.0 66 66.7
A04p14670 Brassica napus HOM05D007428 ORTHO05D009308 5.2e-15 84.0 66 66.7
C04p48540 Brassica napus HOM05D007428 ORTHO05D009308 5.2e-15 84.0 66 66.7
BolC4t26447H Brassica oleracea HOM05D007428 ORTHO05D009308 5.2e-15 84.0 66 66.7
BraA04t17107Z Brassica rapa HOM05D007428 ORTHO05D009308 5.2e-15 84.0 66 66.7
CARHR287610 Cardamine hirsuta HOM05D007428 ORTHO05D009308 1.1e-14 82.8 69 63.8
Gohir.D03G078400 Gossypium hirsutum HOM05D007428 ORTHO05D009308 1.1e-14 82.8 66 65.2
Gorai.003G085700 Gossypium raimondii HOM05D007428 ORTHO05D009308 1.1e-14 82.8 66 65.2
DCAR_005573 Daucus carota HOM05D007428 ORTHO05D009308 1.5e-14 82.4 66 65.2
arahy.Tifrunner.gnm1.ann1.I9CJRL Arachis hypogaea HOM05D007428 ORTHO05D009308 2.0e-14 82.0 60 70.0
HPP92_001758 Vanilla planifolia HOM05D007428 ORTHO05D009308 2.6e-14 81.6 68 60.3
Glyma.03G134700 Glycine max HOM05D007428 ORTHO05D009308 3.3e-14 81.3 64 70.3
Duzib205G1701 Durio zibethinus HOM05D007428 ORTHO05D009308 4.4e-14 80.9 64 65.6
AL7G47840 Arabidopsis lyrata HOM05D007428 ORTHO05D009308 7.4e-14 80.1 69 62.3
AT5G41560 Arabidopsis thaliana HOM05D007428 ORTHO05D009308 7.4e-14 80.1 69 62.3
Sed0012859 Sechium edule HOM05D007428 ORTHO05D009308 9.7e-14 79.7 69 60.9
DCAR_008355 Daucus carota HOM05D001458 ORTHO05D008462 1.3e-13 79.3 69 63.8
Zm00001eb001890 Zea mays HOM05D007428 ORTHO05D009308 1.1e-12 76.3 68 64.7
ECA246G0502 Erigeron canadensis HOM05D007428 ORTHO05D009308 1.8e-12 75.5 62 64.5
SalBow8G4511 Salvia bowleyana HOM05D005196 ORTHO05D006107 1.8e-12 75.5 72 59.7
Os03g0125700 Oryza sativa ssp. japonica HOM05D007428 ORTHO05D009308 3.1e-12 74.7 67 62.7
SEGI_01808 Sequoiadendron giganteum HOM05D007428 ORTHO05D009308 3.1e-12 74.7 64 60.9
Ah.06g194380 Amaranthus hybridus HOM05D007428 ORTHO05D009308 5.3e-12 73.9 95 50.5
arahy.Tifrunner.gnm1.ann1.LGCW4P Arachis hypogaea HOM05D007428 ORTHO05D009308 7.0e-12 73.6 71 59.2
Lsat_1_v5_gn_3_8800 Lactuca sativa HOM05D007428 ORTHO05D009308 7.0e-12 73.6 58 65.5
CDE04G2716 Ceratophyllum demersum HOM05D007428 ORTHO05D009308 2.0e-11 72.0 64 62.5
Zm00001eb403670 Zea mays HOM05D007428 ORTHO05D009308 5.9e-11 70.5 70 61.4
SMO117G0109 Selaginella moellendorffii HOM05D007428 ORTHO05D009308 1.0e-10 69.7 56 60.7
SGA_v2.0_scaffold111G31471 Striga asiatica HOM05D007428 ORTHO05D009308 2.2e-10 68.6 59 61.0
Hma1.2p1_0216F.1_g091060 Hydrangea macrophylla HOM05D007428 ORTHO05D009308 5.0e-10 67.4 67 58.2
Cc08_g15240 Coffea canephora HOM05D007428 ORTHO05D009308 1.1e-09 66.2 67 53.7
Duzib068G1017 Durio zibethinus HOM05D007428 ORTHO05D009308 1.2e-08 62.8 42 73.8
Nitab4.5_0007906g0040 Nicotiana tabacum HOM05D007428 ORTHO05D009308 2.1e-08 62.0 64 56.2
vmacro11409 Vaccinium macrocarpon HOM05D007428 ORTHO05D009308 2.7e-08 61.6 48 66.7
Gorai.004G137700 Gossypium raimondii HOM05D007428 ORTHO05D009308 1.0e-07 59.7 42 69.0
CAN.G792.73 Capsicum annuum HOM05D003118 ORTHO05D009308 1.2e-06 56.2 40 75.0
Ca_08439_v3 Cicer arietinum L. HOM05D007428 ORTHO05D009308 7.5e-06 53.5 62 53.2


User provided reference genes

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