Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g02610 Fragaria vesca HOM05D005554 ORTHO05D007823 0.0e+00 1358.2 710 100.0
FAN18G3000 Fragaria x ananassa HOM05D005554 ORTHO05D007823 0.0e+00 1352.8 707 99.9
FAN04G0002 Fragaria x ananassa HOM05D005554 ORTHO05D007823 0.0e+00 1318.1 707 97.6
FAN13G2706 Fragaria x ananassa HOM05D005554 ORTHO05D007823 0.0e+00 1315.4 707 97.5
FAN08G3292 Fragaria x ananassa HOM05D005554 ORTHO05D007823 0.0e+00 1298.1 709 94.6
RcHm_v2.0_Chr7g0197491 Rosa chinensis HOM05D005554 ORTHO05D007823 0.0e+00 1263.1 714 93.6
MD06G1085100 Malus domestica HOM05D005554 ORTHO05D007823 0.0e+00 1191.4 714 87.3
Prupe.5G101100 Prunus persica HOM05D005554 ORTHO05D007823 0.0e+00 1191.0 714 87.4
QL12p032791 Quercus lobata HOM05D005554 ORTHO05D007823 0.0e+00 1087.4 729 78.3
PGR031G2745 Punica granatum HOM05D005554 ORTHO05D007823 0.0e+00 1086.6 683 82.4
Ciclev10018956m.g Citrus clementina HOM05D005554 ORTHO05D007823 0.0e+00 1086.2 687 80.9
Atru.chr9.2175 Acer truncatum HOM05D005554 ORTHO05D007823 0.0e+00 1082.4 694 79.4
Thecc.03G279900 Theobroma cacao HOM05D005554 ORTHO05D007823 0.0e+00 1075.8 721 77.8
ClCG01G002630 Citrullus lanatus HOM05D005554 ORTHO05D007823 0.0e+00 1075.5 720 77.9
CANSAT21G2493 Cannabis sativa HOM05D005554 ORTHO05D007823 4.9e-312 1074.3 718 77.7
CiPaw.12G092300 Carya illinoinensis HOM05D005554 ORTHO05D007823 4.9e-312 1074.3 724 77.8
Gohir.D12G231000 Gossypium hirsutum HOM05D005554 ORTHO05D007823 1.5e-311 1072.4 725 75.6
Nn6g33413 Nelumbo nucifera HOM05D005554 ORTHO05D007823 1.5e-311 1072.4 726 77.3
Duzib205G0518 Durio zibethinus HOM05D005554 ORTHO05D007823 4.4e-311 1070.8 721 77.1
TAR375G0921 Trochodendron aralioides HOM05D005554 ORTHO05D007823 4.8e-310 1067.4 727 76.9
Gorai.008G247200 Gossypium raimondii HOM05D005554 ORTHO05D007823 1.4e-309 1065.8 725 75.4
Gohir.A12G229900 Gossypium hirsutum HOM05D005554 ORTHO05D007823 5.3e-309 1063.9 725 75.2
CSS0044545 Camellia sinensis var. sinensis HOM05D005554 ORTHO05D007823 1.5e-308 1062.4 685 80.0
Dinv38934 Davidia involucrata HOM05D005554 ORTHO05D007823 2.0e-308 1062.0 676 81.5
Eucgr.D01840 Eucalyptus grandis HOM05D005554 ORTHO05D007823 3.8e-307 1057.7 682 79.8
Cc08_g14820 Coffea canephora HOM05D005554 ORTHO05D007823 5.5e-306 1053.9 729 75.0
Cpa.g.sc74.56 Carica papaya HOM05D005554 ORTHO05D007823 1.2e-305 1052.7 724 76.2
CsaV3_5G002730 Cucumis sativus L. HOM05D005554 ORTHO05D007823 5.1e-304 1047.3 723 75.7
Aqoxy7G00299 Aquilegia oxysepala HOM05D005554 ORTHO05D007823 2.0e-303 1045.4 672 79.0
COL.COLO4_34475 Corchorus olitorius HOM05D005554 ORTHO05D007823 4.3e-303 1044.3 655 81.1
Peaxi162Scf00119g01015 Petunia axillaris HOM05D005554 ORTHO05D007823 4.8e-302 1040.8 675 77.9
Nitab4.5_0001615g0110 Nicotiana tabacum HOM05D005554 ORTHO05D007823 1.4e-301 1039.3 731 74.3
Sed0016596 Sechium edule HOM05D005554 ORTHO05D007823 1.8e-301 1038.9 713 75.7
Oeu064085.1 Olea europaea HOM05D005554 ORTHO05D007823 3.4e-300 1034.6 676 78.7
SalBow1G4020 Salvia bowleyana HOM05D005554 ORTHO05D007823 7.7e-300 1033.5 715 74.7
Lj2C185T6 Lonicera japonica HOM05D005554 ORTHO05D007823 1.4e-298 1029.2 690 77.5
TWI15G0555 Tripterygium wilfordii HOM05D005554 ORTHO05D007823 4.2e-298 1027.7 690 77.4
MELO3C005683.2 Cucumis melo HOM05D005554 ORTHO05D007823 5.5e-298 1027.3 723 74.4
PSO478G3044 Papaver somniferum HOM05D005554 ORTHO05D007823 1.2e-297 1026.2 668 78.9
PGSC0003DMG402012338 Solanum tuberosum HOM05D005554 ORTHO05D007823 3.6e-297 1024.6 679 77.5
Potri.001G103300 Populus trichocarpa HOM05D005554 ORTHO05D007823 6.1e-297 1023.8 677 77.1
Migut.E01089 Erythranthe guttata HOM05D005554 ORTHO05D007823 1.4e-296 1022.7 720 73.9
Sopen08g029470 Solanum pennellii HOM05D005554 ORTHO05D007823 1.4e-296 1022.7 682 77.1
PSO782G1990 Papaver somniferum HOM05D005554 ORTHO05D007823 2.3e-296 1021.9 668 78.3
Solyc08g081170.4 Solanum lycopersicum HOM05D005554 ORTHO05D007823 8.8e-296 1020.0 682 76.8
Manes.02G019800 Manihot esculenta HOM05D005554 ORTHO05D007823 4.8e-294 1014.2 723 73.2
Sabra01G0078000 Salix brachista HOM05D005554 ORTHO05D007823 6.3e-294 1013.8 698 75.5
Lalb_Chr05g0224711 Lupinus albus HOM05D005554 ORTHO05D007823 7.0e-293 1010.4 716 74.2
MSTRG.13839 Avicennia marina HOM05D005554 ORTHO05D007823 4.5e-292 1007.7 671 77.0
Hma1.2p1_0377F.1_g139310 Hydrangea macrophylla HOM05D005554 ORTHO05D007823 8.5e-291 1003.4 668 77.5
Nitab4.5_0010813g0010 Nicotiana tabacum HOM05D005554 ORTHO05D007823 8.0e-289 996.9 773 69.2
DCAR_000617 Daucus carota HOM05D005554 ORTHO05D007823 8.8e-288 993.4 681 75.2
Actinidia14567 Actinidia chinensis HOM05D005554 ORTHO05D007823 6.3e-286 987.3 644 78.4
THA.LOC104823588 Tarenaya hassleriana HOM05D005554 ORTHO05D007823 2.0e-284 982.2 684 74.7
Hund14815 Selenicereus undatus HOM05D005554 ORTHO05D007823 7.7e-284 980.3 729 70.8
arahy.Tifrunner.gnm1.ann1.C4WXPV Arachis hypogaea HOM05D005554 ORTHO05D007823 7.2e-282 973.8 726 71.3
CAN.G774.53 Capsicum annuum HOM05D005554 ORTHO05D007823 2.3e-280 968.8 654 76.5
arahy.Tifrunner.gnm1.ann1.CVD0A8 Arachis hypogaea HOM05D005554 ORTHO05D007823 1.2e-279 966.5 726 71.2
Haze_08788 Corylus avellana HOM05D005554 ORTHO05D007823 2.0e-279 965.7 723 72.3
Sc01g0009640 Simmondsia chinensis HOM05D005554 ORTHO05D007823 5.7e-279 964.1 680 73.2
Ah.10g034840 Amaranthus hybridus HOM05D005554 ORTHO05D007823 4.8e-278 961.1 696 73.4
ATR0680G162 Amborella trichopoda HOM05D005554 ORTHO05D007823 1.1e-277 959.9 674 72.8
MBI18_g45367_MAGBIO Magnolia biondii HOM05D005554 ORTHO05D007823 1.8e-277 959.1 602 81.1
Glyma.08G015200 Glycine max HOM05D005554 ORTHO05D007823 9.1e-277 956.8 723 70.0
AUR62003173 Chenopodium quinoa HOM05D005554 ORTHO05D007823 7.7e-276 953.7 691 72.8
Ca_17525_v3 Cicer arietinum L. HOM05D005554 ORTHO05D007823 2.2e-275 952.2 719 69.8
Medtr8g098345 Medicago truncatula HOM05D005554 ORTHO05D007823 6.5e-275 950.7 724 69.9
Sp2g00970 Schrenkiella parvula HOM05D005554 ORTHO05D007823 4.2e-274 948.0 726 69.7
Glyma.05G208600 Glycine max HOM05D005554 ORTHO05D007823 5.5e-274 947.6 724 69.1
Glyma.05G208921 Glycine max HOM05D005554 ORTHO05D007823 5.5e-274 947.6 724 69.1
vmacro11364 Vaccinium macrocarpon HOM05D005554 ORTHO05D007823 7.2e-274 947.2 785 65.7
VMungo0251G0638 Vigna mungo HOM05D005554 ORTHO05D007823 1.6e-273 946.0 725 69.5
Lj4g0004686 Lotus japonicus HOM05D005554 ORTHO05D007823 3.6e-273 944.9 712 70.6
Carub.0002s0117 Capsella rubella HOM05D005554 ORTHO05D007823 5.2e-272 941.0 727 69.9
AT1G63680 Arabidopsis thaliana HOM05D005554 ORTHO05D007823 2.6e-271 938.7 727 69.5
BcaB07g31556 Brassica carinata HOM05D005554 ORTHO05D007823 4.4e-271 937.9 724 69.3
Phvul.002G290300 Phaseolus vulgaris HOM05D005554 ORTHO05D007823 4.4e-271 937.9 673 72.7
Aa31LG2G890 Aethionema arabicum HOM05D005554 ORTHO05D007823 2.8e-270 935.3 729 69.1
BraA09t37033Z Brassica rapa HOM05D005554 ORTHO05D007823 2.8e-270 935.3 729 69.4
SGA_v2.0_scaffold144G35937 Striga asiatica HOM05D005554 ORTHO05D007823 2.8e-270 935.3 712 69.2
A09p13810 Brassica napus HOM05D005554 ORTHO05D007823 4.9e-270 934.5 729 69.3
unitig_26.g9706 Utricularia gibba HOM05D005554 ORTHO05D007823 4.9e-270 934.5 670 72.7
Thhalv10023292m.g Eutrema salsugineum HOM05D005554 ORTHO05D007823 6.3e-270 934.1 725 69.1
AL2G11550 Arabidopsis lyrata HOM05D005554 ORTHO05D007823 8.3e-270 933.7 726 69.3
EL10Ac6g14928 Beta vulgaris HOM05D005554 ORTHO05D007823 1.4e-269 932.9 685 72.0
BolC9t54561H Brassica oleracea HOM05D005554 ORTHO05D007823 4.1e-269 931.4 728 69.0
BcaC04g22690 Brassica carinata HOM05D005554 ORTHO05D007823 5.4e-269 931.0 728 69.0
C09p16520 Brassica napus HOM05D005554 ORTHO05D007823 5.4e-269 931.0 728 69.0
Psat7g032760 Pisum sativum HOM05D005554 ORTHO05D007823 2.7e-268 928.7 717 68.9
TPR.G12960 Trifolium pratense HOM05D005554 ORTHO05D007823 3.8e-267 924.9 727 68.2
CARHR047660 Cardamine hirsuta HOM05D005554 ORTHO05D007823 4.0e-264 914.8 725 68.1
Lsat_1_v5_gn_3_6620 Lactuca sativa HOM05D005554 ORTHO05D007823 4.4e-263 911.4 676 70.4
CDE05G1777 Ceratophyllum demersum HOM05D005554 ORTHO05D007823 4.1e-261 904.8 668 70.4
Cfa012222 Carpinus fangiana HOM05D005554 ORTHO05D007823 2.8e-257 892.1 624 77.1
ECA246G2370 Erigeron canadensis HOM05D005554 ORTHO05D007823 1.8e-256 889.4 673 68.2
HanXRQChr06g0165871 Helianthus annuus HOM05D005554 ORTHO05D007823 1.8e-256 889.4 677 68.2
AUR62007990 Chenopodium quinoa HOM05D005554 ORTHO05D007823 1.2e-252 876.7 644 72.0
Gorai.003G158300 Gossypium raimondii HOM05D005554 ORTHO05D007823 1.3e-225 786.9 523 75.3
Gohir.A03G016800 Gossypium hirsutum HOM05D005554 ORTHO05D007823 2.1e-225 786.2 523 75.3
Mapoly0091s0082 Marchantia polymorpha HOM05D005554 ORTHO05D007823 4.0e-216 755.4 700 57.9
AagrBONN_evm.TU.Sc2ySwM_228.1600 Anthoceros agrestis HOM05D005554 ORTHO05D007823 1.1e-208 730.7 661 56.1
Pp3c24_18820 Physcomitrium patens HOM05D005554 ORTHO05D007823 5.1e-203 711.8 672 56.0
Os10g0548900 Oryza sativa ssp. japonica HOM05D005554 ORTHO05D007823 6.7e-203 711.4 659 58.1
HPP92_014728 Vanilla planifolia HOM05D005554 ORTHO05D007823 5.3e-200 701.8 487 67.4
Zm00001eb391750 Zea mays HOM05D005554 ORTHO05D007823 1.1e-194 684.1 675 56.3
SMO147G0132 Selaginella moellendorffii HOM05D005554 ORTHO05D007823 1.8e-192 676.8 481 67.2
CBR_g32224 Chara braunii HOM05D005554 ORTHO05D007823 8.8e-187 657.9 483 65.8
Pp3c23_15810 Physcomitrium patens HOM05D005554 ORTHO05D007823 6.3e-185 651.7 506 62.6
Gohir.D03G151100 Gossypium hirsutum HOM05D005554 ORTHO05D007823 1.8e-171 607.1 375 78.9
HPP92_020853 Vanilla planifolia HOM05D005554 ORTHO05D007823 5.2e-147 525.8 374 67.4
GSVIVG01019746001 Vitis vinifera HOM05D005554 ORTHO05D007823 5.4e-144 515.8 349 75.1
Lj2C0T8 Lonicera japonica HOM05D005554 ORTHO05D007823 8.6e-126 455.3 300 77.0
HPP92_008494 Vanilla planifolia HOM05D005554 ORTHO05D007823 7.4e-101 372.5 215 82.8
PRCOL_00002248 Prasinoderma coloniale HOM05D005554 ORTHO05D007823 3.8e-97 360.1 655 36.8
HPP92_008493 Vanilla planifolia HOM05D005554 ORTHO05D007823 9.3e-96 355.5 269 63.2
CAN.G20.10 Capsicum annuum HOM05D005554 ORTHO05D007823 7.4e-93 345.9 278 65.8
MCO12G378 Micromonas commoda HOM05D005554 ORTHO05D007823 6.5e-89 332.8 461 41.0
Lj2C0T9 Lonicera japonica HOM05D005554 ORTHO05D007823 5.0e-81 306.6 275 64.7
Oeu007749.1 Olea europaea HOM05D005554 ORTHO05D007823 3.4e-74 283.9 573 37.9
Actinidia02000 Actinidia chinensis HOM05D005554 ORTHO05D007823 2.6e-69 267.7 349 47.9
Cre12.g519900 Chlamydomonas reinhardtii HOM05D005554 ORTHO05D007823 1.1e-64 252.3 679 30.0
SEGI_34096 Sequoiadendron giganteum HOM05D005554 ORTHO05D007823 8.6e-41 172.9 101 77.2
BcaC06g33105 Brassica carinata HOM05D005554 ORTHO05D021652 4.7e-31 140.6 156 51.9
BcaB04g18522 Brassica carinata HOM05D005554 ORTHO05D021652 6.1e-31 140.2 126 59.5
MD14G1106100 Malus domestica HOM05D005554 ORTHO05D026402 1.0e-30 139.4 132 61.4
MD14G1106300 Malus domestica HOM05D005554 ORTHO05D007823 2.6e-21 108.2 55 81.8
CSS0006848 Camellia sinensis var. sinensis HOM05D005554 ORTHO05D007823 4.9e-20 104.0 54 79.6
HPP92_008492 Vanilla planifolia HOM05D005554 ORTHO05D026402 6.4e-20 103.6 108 54.6
Sabra03G0091300 Salix brachista HOM05D008679 ORTHO05D010804 3.5e-18 97.8 122 44.3
BcaB06g26524 Brassica carinata HOM05D005554 ORTHO05D021652 1.1e-14 86.3 80 53.8
BcaB07g30213 Brassica carinata HOM05D005554 ORTHO05D021652 2.4e-11 75.1 44 84.1
MD14G1106200 Malus domestica HOM05D005554 ORTHO05D007823 5.4e-11 73.9 41 82.9
Actinidia02001 Actinidia chinensis HOM05D005554 ORTHO05D026402 8.6e-09 66.6 70 55.7
Pp3c5_9920 Physcomitrium patens HOM05D005554 ORTHO05D007823 2.8e-07 61.6 80 46.2
Gohir.D01G027900 Gossypium hirsutum HOM05D008447 ORTHO05D010638 6.2e-07 60.5 258 24.8
Gohir.A01G040200 Gossypium hirsutum HOM05D008447 ORTHO05D010638 2.4e-06 58.5 254 24.4
Pp3c3_2590 Physcomitrium patens HOM05D005554 ORTHO05D313840 2.4e-06 58.5 80 41.2
Prupe.7G070400 Prunus persica HOM05D008447 ORTHO05D010638 4.0e-06 57.8 276 26.4


User provided reference genes

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