Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g00330 Fragaria vesca HOM05D007062 ORTHO05D008941 1.8e-111 406.4 281 100.0
FAN08G1089 Fragaria x ananassa HOM05D007062 ORTHO05D008941 1.1e-108 397.1 294 95.6
FAN18G0001 Fragaria x ananassa HOM05D007062 ORTHO05D008941 1.1e-108 397.1 294 95.6
RcHm_v2.0_Chr7g0202221 Rosa chinensis HOM05D007062 ORTHO05D008941 7.9e-99 364.4 281 93.2
Prupe.5G075900 Prunus persica HOM05D007062 ORTHO05D008941 4.5e-86 322.0 282 83.3
MD06G1065500 Malus domestica HOM05D007062 ORTHO05D008941 8.5e-77 291.2 284 84.5
FAN04G1528 Fragaria x ananassa HOM05D007062 ORTHO05D008941 4.7e-75 285.4 269 65.8
CiPaw.12G106400 Carya illinoinensis HOM05D007062 ORTHO05D008941 1.9e-68 263.5 281 76.5
Manes.01G076100 Manihot esculenta HOM05D007062 ORTHO05D008941 5.2e-66 255.4 286 71.7
Ciclev10021545m.g Citrus clementina HOM05D007062 ORTHO05D008941 1.5e-65 253.8 284 75.7
CsaV3_5G003940 Cucumis sativus L. HOM05D007062 ORTHO05D008941 4.4e-65 252.3 278 72.7
Sed0027513 Sechium edule HOM05D007062 ORTHO05D008941 4.4e-65 252.3 279 75.3
ClCG01G003790 Citrullus lanatus HOM05D007062 ORTHO05D008941 9.8e-65 251.1 278 73.4
Duzib205G0297 Durio zibethinus HOM05D007062 ORTHO05D008941 4.9e-64 248.8 284 75.0
MELO3C005562.2 Cucumis melo HOM05D007062 ORTHO05D008941 8.3e-64 248.1 280 72.9
Atru.chr9.1388 Acer truncatum HOM05D007062 ORTHO05D008941 1.8e-63 246.9 282 74.8
GSVIVG01001267001 Vitis vinifera HOM05D007062 ORTHO05D008941 4.1e-63 245.7 281 76.2
Cpa.g.sc29.119 Carica papaya HOM05D007062 ORTHO05D008941 5.4e-63 245.4 283 74.9
Phvul.002G061100 Phaseolus vulgaris HOM05D007062 ORTHO05D008941 7.0e-63 245.0 284 72.5
TAR375G0275 Trochodendron aralioides HOM05D007062 ORTHO05D008941 7.0e-63 245.0 282 75.2
CSS0040813 Camellia sinensis var. sinensis HOM05D007062 ORTHO05D008941 4.5e-62 242.3 292 73.3
CSS0025302 Camellia sinensis var. sinensis HOM05D007062 ORTHO05D008941 5.9e-62 241.9 292 72.9
CAN.G1217.21 Capsicum annuum HOM05D007062 ORTHO05D008941 1.0e-61 241.1 281 72.6
VMungo1215G0274 Vigna mungo HOM05D007062 ORTHO05D008941 1.3e-61 240.7 285 73.3
Lsat_1_v5_gn_6_2361 Lactuca sativa HOM05D007062 ORTHO05D008941 1.7e-61 240.4 282 75.9
Potri.003G112900 Populus trichocarpa HOM05D007062 ORTHO05D008941 2.9e-61 239.6 282 69.9
Glyma.11G030700 Glycine max HOM05D007062 ORTHO05D008941 5.0e-61 238.8 283 76.0
Nitab4.5_0000993g0090 Nicotiana tabacum HOM05D007062 ORTHO05D008941 8.6e-61 238.0 284 73.6
CANSAT21G0465 Cannabis sativa HOM05D007062 ORTHO05D008941 1.5e-60 237.3 285 73.3
Peaxi162Scf00002g00075 Petunia axillaris HOM05D007062 ORTHO05D008941 2.5e-60 236.5 282 71.6
Thecc.03G257500 Theobroma cacao HOM05D007062 ORTHO05D008941 3.3e-60 236.1 292 67.1
TPR.G25898 Trifolium pratense HOM05D007062 ORTHO05D008941 5.6e-60 235.3 283 74.9
Solyc08g079110.4 Solanum lycopersicum HOM05D007062 ORTHO05D008941 1.2e-59 234.2 281 72.2
Actinidia02105 Actinidia chinensis HOM05D007062 ORTHO05D008941 2.1e-59 233.4 281 75.8
PGSC0003DMG400004788 Solanum tuberosum HOM05D007062 ORTHO05D008941 2.1e-59 233.4 281 71.2
Cc08_g12960 Coffea canephora HOM05D007062 ORTHO05D008941 2.8e-59 233.0 285 71.6
QL12p014002 Quercus lobata HOM05D007062 ORTHO05D008941 3.6e-59 232.6 317 47.9
SalBow6G7097 Salvia bowleyana HOM05D007062 ORTHO05D008941 3.6e-59 232.6 281 71.9
Sopen08g027570 Solanum pennellii HOM05D007062 ORTHO05D008941 3.6e-59 232.6 281 72.6
TWI60G0310 Tripterygium wilfordii HOM05D007062 ORTHO05D008941 4.7e-59 232.3 281 73.3
Thhalv10008422m.g Eutrema salsugineum HOM05D007062 ORTHO05D008941 8.0e-59 231.5 282 72.0
Gohir.D08G190800 Gossypium hirsutum HOM05D007062 ORTHO05D008941 8.0e-59 231.5 285 66.3
Nitab4.5_0005649g0010 Nicotiana tabacum HOM05D007062 ORTHO05D008941 8.0e-59 231.5 284 72.5
ECA232G1654 Erigeron canadensis HOM05D007062 ORTHO05D008941 1.4e-58 230.7 285 71.6
Sc06g0007370 Simmondsia chinensis HOM05D007062 ORTHO05D008941 1.4e-58 230.7 247 78.5
THA.LOC104818475 Tarenaya hassleriana HOM05D007062 ORTHO05D008941 2.3e-58 229.9 287 67.6
arahy.Tifrunner.gnm1.ann1.06MV4V Arachis hypogaea HOM05D007062 ORTHO05D008941 3.0e-58 229.6 283 72.1
arahy.Tifrunner.gnm1.ann1.FU46H2 Arachis hypogaea HOM05D007062 ORTHO05D008941 3.0e-58 229.6 283 72.1
Lalb_Chr16g0379721 Lupinus albus HOM05D007062 ORTHO05D008941 3.0e-58 229.6 219 86.3
BcaC07g42568 Brassica carinata HOM05D007062 ORTHO05D008941 4.0e-58 229.2 284 71.5
Migut.A00806 Erythranthe guttata HOM05D007062 ORTHO05D008941 5.2e-58 228.8 284 70.1
Lj2g0026876 Lotus japonicus HOM05D007062 ORTHO05D008941 5.2e-58 228.8 282 72.0
Sp1g10870 Schrenkiella parvula HOM05D007062 ORTHO05D008941 5.2e-58 228.8 282 72.3
MSTRG.25539 Avicennia marina HOM05D007062 ORTHO05D008941 6.8e-58 228.4 279 61.3
Gorai.004G200900 Gossypium raimondii HOM05D007062 ORTHO05D008941 6.8e-58 228.4 285 62.5
BcaC07g41714 Brassica carinata HOM05D007062 ORTHO05D008941 1.2e-57 227.6 281 71.2
C08p47500 Brassica napus HOM05D007062 ORTHO05D008941 1.5e-57 227.3 281 71.2
PGR031G1282 Punica granatum HOM05D007062 ORTHO05D008941 1.5e-57 227.3 273 64.1
Hund11577 Selenicereus undatus HOM05D007062 ORTHO05D008941 1.5e-57 227.3 279 69.2
BolC8t52291H Brassica oleracea HOM05D007062 ORTHO05D008941 3.4e-57 226.1 282 71.6
Carub.0001s1193 Capsella rubella HOM05D007062 ORTHO05D008941 3.4e-57 226.1 291 70.1
Aa31LG1G2430 Aethionema arabicum HOM05D007062 ORTHO05D008941 5.7e-57 225.3 291 60.5
Eucgr.D02028 Eucalyptus grandis HOM05D007062 ORTHO05D008941 5.7e-57 225.3 268 59.7
BraA09t41747Z Brassica rapa HOM05D007062 ORTHO05D008941 7.5e-57 224.9 284 70.8
SGA_v2.0_scaffold120G32845 Striga asiatica HOM05D007062 ORTHO05D008941 1.3e-56 224.2 281 72.2
AT1G12250 Arabidopsis thaliana HOM05D007062 ORTHO05D008941 1.7e-56 223.8 292 70.9
AL1G23540 Arabidopsis lyrata HOM05D007062 ORTHO05D008941 2.2e-56 223.4 286 70.6
Zm00001eb248670 Zea mays HOM05D007062 ORTHO05D008941 2.9e-56 223.0 267 72.7
A09p63980 Brassica napus HOM05D007062 ORTHO05D008941 3.7e-56 222.6 281 70.5
Ah.02g116970 Amaranthus hybridus HOM05D007062 ORTHO05D008941 8.3e-56 221.5 282 69.9
FAN13G1422 Fragaria x ananassa HOM05D007062 ORTHO05D008941 1.8e-55 220.3 233 60.9
PSO063G0503 Papaver somniferum HOM05D007062 ORTHO05D008941 3.2e-55 219.5 290 70.7
HanXRQChr02g0049591 Helianthus annuus HOM05D007062 ORTHO05D008941 3.5e-54 216.1 310 67.1
Aqoxy5G03933 Aquilegia oxysepala HOM05D007062 ORTHO05D008941 6.0e-54 215.3 285 70.5
HPP92_003260 Vanilla planifolia HOM05D007062 ORTHO05D008941 6.0e-54 215.3 276 73.2
Os02g0643500 Oryza sativa ssp. japonica HOM05D007062 ORTHO05D008941 1.3e-53 214.2 287 60.6
PSO782G2909 Papaver somniferum HOM05D007062 ORTHO05D008941 3.9e-53 212.6 299 66.2
Medtr5g012110 Medicago truncatula HOM05D007062 ORTHO05D008941 1.9e-52 210.3 283 70.3
SEGI_22381 Sequoiadendron giganteum HOM05D007062 ORTHO05D008941 1.9e-52 210.3 248 75.0
EL10Ac5g13006 Beta vulgaris HOM05D007062 ORTHO05D008941 2.5e-52 209.9 246 60.2
vmacro05405 Vaccinium macrocarpon HOM05D007062 ORTHO05D008941 2.5e-52 209.9 196 85.7
Sabra03G0078200 Salix brachista HOM05D007062 ORTHO05D008941 7.3e-52 208.4 366 44.0
ATR0568G204 Amborella trichopoda HOM05D007062 ORTHO05D008941 9.5e-52 208.0 196 87.8
Gohir.A08G172400 Gossypium hirsutum HOM05D007062 ORTHO05D008941 9.8e-49 198.0 193 76.7
AUR62007471 Chenopodium quinoa HOM05D007062 ORTHO05D008941 3.0e-45 186.4 181 82.9
Mapoly0083s0077 Marchantia polymorpha HOM05D007062 ORTHO05D008941 1.5e-44 184.1 240 60.4
SMO137G0193 Selaginella moellendorffii HOM05D007062 ORTHO05D008941 2.8e-43 179.9 216 63.4
Pp3c21_17930 Physcomitrium patens HOM05D007062 ORTHO05D008941 3.6e-43 179.5 266 62.4
CBR_g19734 Chara braunii HOM05D007062 ORTHO05D008941 1.8e-42 177.2 216 64.8
CDE04G1356 Ceratophyllum demersum HOM05D007062 ORTHO05D008941 1.1e-36 157.9 85 89.4
COL.COLO4_37223 Corchorus olitorius HOM05D007062 ORTHO05D008941 1.1e-36 157.9 87 86.2
DCAR_004919 Daucus carota HOM05D007062 ORTHO05D008941 2.5e-36 156.8 87 88.5
Hma1.2p1_1691F.1_g297800 Hydrangea macrophylla HOM05D007062 ORTHO05D008941 2.5e-36 156.8 84 88.1
Hma1.2p1_1691F.1_g297810 Hydrangea macrophylla HOM05D007062 ORTHO05D008941 2.5e-36 156.8 84 88.1
CARHR012560 Cardamine hirsuta HOM05D007062 ORTHO05D008941 1.2e-35 154.5 85 87.1
AUR62039929 Chenopodium quinoa HOM05D007062 ORTHO05D008941 1.1e-34 151.4 87 83.9
AUR62043761 Chenopodium quinoa HOM05D007062 ORTHO05D008941 1.1e-34 151.4 87 83.9
Glyma.01G211100 Glycine max HOM05D007062 ORTHO05D008941 4.0e-34 149.4 250 44.8
Cfa012777 Carpinus fangiana HOM05D007062 ORTHO05D008941 1.3e-29 134.4 217 73.3
Dinv39100 Davidia involucrata HOM05D007062 ORTHO05D008941 4.3e-28 129.4 181 56.4
AagrBONN_evm.TU.Sc2ySwM_228.1920 Anthoceros agrestis HOM05D000741 ORTHO05D000506 2.9e-24 116.7 226 56.2
GSVIVG01001268001 Vitis vinifera HOM05D007062 ORTHO05D008941 1.1e-23 114.8 130 55.4
Nn6g34047 Nelumbo nucifera HOM05D007062 ORTHO05D008941 3.5e-22 109.8 131 54.2
Psat2g178680 Pisum sativum HOM05D007062 ORTHO05D008941 2.3e-21 107.1 209 68.9
Haze_08582 Corylus avellana HOM05D007062 ORTHO05D008941 3.0e-21 106.7 141 59.6
CDE04G0607 Ceratophyllum demersum HOM05D007062 ORTHO05D008941 2.4e-18 97.1 67 77.6
CAN.G1293.1 Capsicum annuum HOM05D007062 ORTHO05D008941 3.8e-16 89.7 60 78.3
Cre17.g721700 Chlamydomonas reinhardtii HOM05D007062 ORTHO05D008941 1.0e-13 81.6 182 48.9
Lj8A257G61 Lonicera japonica HOM05D007062 ORTHO05D008941 1.5e-12 77.8 45 82.2
COL.COLO4_37221 Corchorus olitorius HOM05D007062 ORTHO05D008941 6.2e-11 72.4 54 70.4
MCO12G419 Micromonas commoda HOM05D007062 ORTHO05D008941 2.6e-09 67.0 44 70.5
SEGI_25676 Sequoiadendron giganteum HOM05D007062 ORTHO05D008941 5.5e-07 59.3 49 63.3
Rhsim10G0100700 Rhododendron simsii HOM05D000726 ORTHO05D007554 9.3e-07 58.5 87 47.1


User provided reference genes

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