Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g41020 Fragaria vesca HOM05D004632 ORTHO05D005556 9.2e-263 910.2 666 100.0
FAN20G1191 Fragaria x ananassa HOM05D004632 ORTHO05D005556 1.1e-255 886.7 683 96.6
FAN20G0152 Fragaria x ananassa HOM05D004632 ORTHO05D005556 6.0e-254 880.9 682 96.5
FAN27G1200 Fragaria x ananassa HOM05D004632 ORTHO05D005556 3.2e-247 858.6 453 98.0
RcHm_v2.0_Chr6g0299541 Rosa chinensis HOM05D004632 ORTHO05D005556 8.9e-242 840.5 667 94.8
Prupe.1G392800 Prunus persica HOM05D004632 ORTHO05D005556 1.3e-221 773.5 674 88.4
MD00G1143300 Malus domestica HOM05D004632 ORTHO05D005556 9.7e-204 714.1 462 81.4
CiPaw.07G229300 Carya illinoinensis HOM05D004632 ORTHO05D005556 7.4e-196 688.0 685 81.5
Glyma.04G061600 Glycine max HOM05D004632 ORTHO05D005556 9.7e-196 687.6 671 82.1
GSVIVG01035887001 Vitis vinifera HOM05D004632 ORTHO05D005556 1.7e-195 686.8 675 81.9
VMungo1309G0882 Vigna mungo HOM05D004632 ORTHO05D005556 1.1e-194 684.1 670 81.5
Glyma.06G062300 Glycine max HOM05D004632 ORTHO05D005556 5.3e-194 681.8 670 81.5
Dinv34967 Davidia involucrata HOM05D004632 ORTHO05D005556 6.9e-194 681.4 674 81.8
Phvul.009G087600 Phaseolus vulgaris HOM05D004632 ORTHO05D005556 6.9e-194 681.4 671 81.2
Duzib168G2284 Durio zibethinus HOM05D004632 ORTHO05D005556 6.5e-192 674.9 665 81.7
arahy.Tifrunner.gnm1.ann1.8PBG0P Arachis hypogaea HOM05D004632 ORTHO05D005556 3.2e-191 672.5 664 80.4
Ciclev10007613m.g Citrus clementina HOM05D004632 ORTHO05D005556 4.2e-191 672.2 671 81.4
Potri.018G020200 Populus trichocarpa HOM05D004632 ORTHO05D005556 9.4e-191 671.0 677 80.5
Manes.16G128700 Manihot esculenta HOM05D004632 ORTHO05D005556 2.1e-190 669.8 673 81.6
Rhsim02G0214000 Rhododendron simsii HOM05D004632 ORTHO05D005556 6.1e-190 668.3 671 80.9
CSS0008139 Camellia sinensis var. sinensis HOM05D004632 ORTHO05D005556 3.9e-189 665.6 671 80.6
MELO3C016968.2 Cucumis melo HOM05D004632 ORTHO05D005556 6.7e-189 664.8 671 80.5
Aqoxy7G03810 Aquilegia oxysepala HOM05D004632 ORTHO05D005556 8.8e-189 664.5 665 80.6
Lj1g0022186 Lotus japonicus HOM05D004632 ORTHO05D005556 8.8e-189 664.5 664 79.7
Lalb_Chr23g0268241 Lupinus albus HOM05D004632 ORTHO05D005556 1.1e-188 664.1 668 80.5
CsaV3_4G036640 Cucumis sativus L. HOM05D004632 ORTHO05D005556 1.5e-188 663.7 671 80.0
Potri.006G263400 Populus trichocarpa HOM05D004632 ORTHO05D005556 1.5e-188 663.7 674 79.8
Atru.chr7.2537 Acer truncatum HOM05D004632 ORTHO05D005556 2.0e-188 663.3 680 79.1
Psat5g032640 Pisum sativum HOM05D004632 ORTHO05D005556 2.0e-188 663.3 670 79.7
Medtr3g106080 Medicago truncatula HOM05D004632 ORTHO05D005556 9.7e-188 661.0 672 79.8
TPR.G1835 Trifolium pratense HOM05D004632 ORTHO05D005556 1.3e-187 660.6 672 80.2
Nn8g39852 Nelumbo nucifera HOM05D004632 ORTHO05D005556 3.7e-187 659.1 668 80.8
PSO782G2171 Papaver somniferum HOM05D004632 ORTHO05D005556 6.3e-187 658.3 666 80.8
PSO063G4867 Papaver somniferum HOM05D004632 ORTHO05D005556 5.3e-186 655.2 670 80.4
Sed0004025 Sechium edule HOM05D004632 ORTHO05D005556 1.6e-185 653.7 671 80.0
Ca_15774_v3 Cicer arietinum L. HOM05D004632 ORTHO05D005556 2.6e-185 652.9 673 79.3
arahy.Tifrunner.gnm1.ann1.21LKMJ Arachis hypogaea HOM05D004632 ORTHO05D005556 4.5e-185 652.1 454 73.3
Actinidia22297 Actinidia chinensis HOM05D004632 ORTHO05D005556 7.7e-185 651.4 672 79.9
Peaxi162Scf00430g00519 Petunia axillaris HOM05D004632 ORTHO05D005556 1.3e-184 650.6 672 79.8
Sabra06G0205900 Salix brachista HOM05D004632 ORTHO05D005556 3.8e-184 649.0 671 79.6
CAN.G199.61 Capsicum annuum HOM05D004632 ORTHO05D005556 1.9e-183 646.7 674 78.6
Cc09_g08590 Coffea canephora HOM05D004632 ORTHO05D005556 4.7e-182 642.1 676 78.1
TWI32G0830 Tripterygium wilfordii HOM05D004632 ORTHO05D005556 4.7e-182 642.1 677 78.3
ClCG05G016370 Citrullus lanatus HOM05D004632 ORTHO05D005556 4.0e-181 639.0 678 78.6
Cpa.g.sc127.22 Carica papaya HOM05D004632 ORTHO05D005556 2.8e-179 632.9 459 70.8
EL10Ac1g00704 Beta vulgaris HOM05D004632 ORTHO05D005556 3.7e-179 632.5 677 75.0
HanXRQChr03g0084861 Helianthus annuus HOM05D004632 ORTHO05D005556 8.2e-179 631.3 669 77.4
MSTRG.9370 Avicennia marina HOM05D004632 ORTHO05D005556 1.4e-178 630.6 670 78.1
Gorai.001G037500 Gossypium raimondii HOM05D004632 ORTHO05D005556 7.0e-178 628.2 662 79.6
Gohir.A07G031900 Gossypium hirsutum HOM05D004632 ORTHO05D005556 9.1e-178 627.9 665 79.2
MBI15_g05236_MAGBIO Magnolia biondii HOM05D004632 ORTHO05D005556 1.2e-177 627.5 454 72.7
ECA240G3507 Erigeron canadensis HOM05D004632 ORTHO05D005556 5.9e-177 625.2 668 77.7
DCAR_015265 Daucus carota HOM05D004632 ORTHO05D005556 7.7e-177 624.8 458 70.5
Gohir.D07G035600 Gossypium hirsutum HOM05D004632 ORTHO05D005556 1.0e-176 624.4 665 78.9
Sopen06g024220 Solanum pennellii HOM05D004632 ORTHO05D005556 1.7e-176 623.6 679 76.9
Gohir.A05G058900 Gossypium hirsutum HOM05D004632 ORTHO05D005556 1.9e-175 620.2 665 78.5
PGR042G1415 Punica granatum HOM05D004632 ORTHO05D005556 1.9e-175 620.2 674 77.3
Solyc06g065700.3 Solanum lycopersicum HOM05D004632 ORTHO05D005556 1.9e-175 620.2 677 76.5
Lj7A732T26 Lonicera japonica HOM05D004632 ORTHO05D005556 2.1e-174 616.7 653 75.7
Lsat_1_v5_gn_6_77900 Lactuca sativa HOM05D004632 ORTHO05D005556 2.7e-174 616.3 462 69.9
Migut.N00603 Erythranthe guttata HOM05D004632 ORTHO05D005556 8.0e-174 614.8 669 76.5
Lsat_1_v5_gn_7_4261 Lactuca sativa HOM05D004632 ORTHO05D005556 6.8e-173 611.7 461 69.6
THA.LOC104814991 Tarenaya hassleriana HOM05D004632 ORTHO05D005556 6.8e-173 611.7 677 76.8
BcaB04g19812 Brassica carinata HOM05D004632 ORTHO05D005556 1.2e-172 610.9 670 75.7
BraA09t36273Z Brassica rapa HOM05D004632 ORTHO05D005556 2.8e-171 606.3 668 75.9
A09p06280 Brassica napus HOM05D004632 ORTHO05D005556 3.7e-171 605.9 668 75.9
BolC9t53613H Brassica oleracea HOM05D004632 ORTHO05D005556 1.8e-170 603.6 668 75.6
ATR0739G094 Amborella trichopoda HOM05D004632 ORTHO05D005556 4.5e-169 599.0 667 75.7
C09p06950 Brassica napus HOM05D004632 ORTHO05D005556 1.9e-167 593.6 668 75.1
BcaC04g23574 Brassica carinata HOM05D004632 ORTHO05D005556 2.5e-167 593.2 668 75.1
Eucgr.C02661 Eucalyptus grandis HOM05D004632 ORTHO05D005556 2.5e-167 593.2 689 74.2
Thecc.09G016800 Theobroma cacao HOM05D004632 ORTHO05D005556 3.0e-165 586.3 570 86.7
SGA_v2.0_scaffold40G15680 Striga asiatica HOM05D004632 ORTHO05D005556 3.4e-164 582.8 707 72.8
BolC2t12041H Brassica oleracea HOM05D004632 ORTHO05D005556 4.4e-164 582.4 669 74.1
Sp2g22380 Schrenkiella parvula HOM05D004632 ORTHO05D005556 2.2e-163 580.1 668 74.7
Carub.0006s2297 Capsella rubella HOM05D004632 ORTHO05D005556 2.8e-163 579.7 668 75.0
Ah.05g177560 Amaranthus hybridus HOM05D004632 ORTHO05D005556 3.7e-163 579.3 475 66.1
AT5G25150 Arabidopsis thaliana HOM05D004632 ORTHO05D005556 3.7e-163 579.3 669 74.9
Thhalv10003767m.g Eutrema salsugineum HOM05D004632 ORTHO05D005556 2.7e-161 573.2 669 74.6
Phvul.001G042300 Phaseolus vulgaris HOM05D004632 ORTHO05D005556 2.7e-161 573.2 666 73.7
VMungo0647G2075 Vigna mungo HOM05D004632 ORTHO05D005556 3.5e-161 572.8 665 73.4
Glyma.17G222200 Glycine max HOM05D004632 ORTHO05D005556 2.9e-160 569.7 454 66.5
MSTRG.4644 Avicennia marina HOM05D004632 ORTHO05D005556 8.6e-160 568.2 670 74.5
C02p59830 Brassica napus HOM05D004632 ORTHO05D005556 1.1e-159 567.8 669 73.1
CSS0046974 Camellia sinensis var. sinensis HOM05D004632 ORTHO05D005556 2.1e-158 563.5 615 78.7
Nitab4.5_0007182g0050 Nicotiana tabacum HOM05D004632 ORTHO05D005556 4.7e-158 562.4 452 66.4
AUR62013801 Chenopodium quinoa HOM05D004632 ORTHO05D005556 1.0e-157 561.2 607 75.0
HPP92_014401 Vanilla planifolia HOM05D004632 ORTHO05D005556 1.5e-156 557.4 666 73.9
BraA02t08956Z Brassica rapa HOM05D004632 ORTHO05D005556 3.4e-156 556.2 669 72.9
Haze_21427 Corylus avellana HOM05D004632 ORTHO05D005556 5.7e-156 555.4 462 66.7
Os06g0649500 Oryza sativa ssp. japonica HOM05D004632 ORTHO05D005556 7.5e-156 555.1 456 64.0
A02p39940 Brassica napus HOM05D004632 ORTHO05D005556 9.8e-156 554.7 669 72.8
vmacro11252 Vaccinium macrocarpon HOM05D004632 ORTHO05D005556 1.8e-154 550.4 604 64.1
CARHR188340 Cardamine hirsuta HOM05D004632 ORTHO05D005556 5.4e-154 548.9 459 64.9
CDE05G3472 Ceratophyllum demersum HOM05D004632 ORTHO05D005556 3.5e-153 546.2 667 62.1
Nitab4.5_0003976g0020 Nicotiana tabacum HOM05D004632 ORTHO05D005556 1.7e-152 543.9 724 65.1
AUR62023356 Chenopodium quinoa HOM05D004632 ORTHO05D005556 3.0e-152 543.1 669 69.2
Hund27424 Selenicereus undatus HOM05D004632 ORTHO05D005556 9.5e-151 538.1 580 55.0
Aa31LG11G4400 Aethionema arabicum HOM05D004632 ORTHO05D005556 1.6e-150 537.3 462 61.5
TAR626G1191 Trochodendron aralioides HOM05D004632 ORTHO05D005556 1.1e-149 534.6 568 84.3
SalBow1G2567 Salvia bowleyana HOM05D004632 ORTHO05D005556 3.4e-148 529.6 388 71.1
AL6G36810 Arabidopsis lyrata HOM05D004632 ORTHO05D005556 3.5e-145 519.6 669 71.4
BcaB07g29936 Brassica carinata HOM05D004632 ORTHO05D005556 4.3e-143 512.7 454 60.4
Zm00001eb388650 Zea mays HOM05D004632 ORTHO05D005556 6.0e-137 492.3 571 78.1
BcaC03g17924 Brassica carinata HOM05D004632 ORTHO05D005556 2.9e-131 473.4 669 68.2
MD15G1039100 Malus domestica HOM05D004632 ORTHO05D005556 9.9e-124 448.4 318 76.1
TAR625G0176 Trochodendron aralioides HOM05D004632 ORTHO05D005556 2.9e-123 446.8 357 69.2
Gohir.D05G060932 Gossypium hirsutum HOM05D004632 ORTHO05D005556 3.8e-123 446.4 640 59.7
Mapoly0009s0169 Marchantia polymorpha HOM05D004632 ORTHO05D005556 9.6e-119 431.8 682 63.3
Oeu061252.3 Olea europaea HOM05D004632 ORTHO05D005556 4.6e-113 412.9 705 62.4
Pp3c12_23330 Physcomitrium patens HOM05D004632 ORTHO05D005556 4.6e-113 412.9 471 49.9
CSS0042581 Camellia sinensis var. sinensis HOM05D004632 ORTHO05D005556 2.5e-111 407.1 293 75.8
SMO118G0104 Selaginella moellendorffii HOM05D004632 ORTHO05D005556 1.1e-103 381.7 395 52.2
Oeu013659.1 Olea europaea HOM05D004632 ORTHO05D005556 1.6e-102 377.9 279 70.6
Actinidia13189 Actinidia chinensis HOM05D004632 ORTHO05D005556 1.3e-86 325.1 551 67.0
Zm00001eb259920 Zea mays HOM05D004632 ORTHO05D005556 6.5e-67 259.6 194 70.6
COL.COLO4_18941 Corchorus olitorius HOM05D004632 ORTHO05D005556 6.1e-65 253.1 231 62.8
MD15G1039000 Malus domestica HOM05D004632 ORTHO05D005556 3.3e-63 247.3 140 87.9
Sed0017212 Sechium edule HOM05D004632 ORTHO05D005556 1.7e-59 235.0 570 49.1
PRCOL_00000651 Prasinoderma coloniale HOM05D004632 ORTHO05D005556 1.2e-57 228.8 468 33.5
VMungo1309G1582 Vigna mungo HOM05D004632 ORTHO05D005556 3.1e-53 214.2 136 80.1
Dinv40981 Davidia involucrata HOM05D004632 ORTHO05D005556 5.0e-51 206.8 278 50.4
Manes.03G009801 Manihot esculenta HOM05D004632 ORTHO05D005556 1.9e-50 204.9 297 48.5
SEGI_13945 Sequoiadendron giganteum HOM05D004632 ORTHO05D005556 3.3e-50 204.1 162 60.5
CDE05G1210 Ceratophyllum demersum HOM05D004632 ORTHO05D005556 6.1e-49 199.9 143 69.9
CBR_g41144 Chara braunii HOM05D004632 ORTHO05D005556 2.3e-48 198.0 193 49.2
MCO11G306 Micromonas commoda HOM05D004632 ORTHO05D005556 2.2e-46 191.4 494 30.0
SEGI_28232 Sequoiadendron giganteum HOM05D004632 ORTHO05D005556 1.8e-45 188.3 170 62.9
MCO11G293 Micromonas commoda HOM05D004632 ORTHO05D005556 1.7e-43 181.8 530 28.3
CDE05G3588 Ceratophyllum demersum HOM05D004632 ORTHO05D005556 2.0e-39 168.3 124 66.1
AagrBONN_evm.TU.Sc2ySwM_228.3176 Anthoceros agrestis HOM05D003428 ORTHO05D004131 2.6e-39 167.9 147 57.1
PSO541G0014 Papaver somniferum HOM05D004632 ORTHO05D005556 1.6e-36 158.7 116 71.6
CBR_g39739 Chara braunii HOM05D004632 ORTHO05D005556 3.3e-34 151.0 290 36.9
Actinidia10511 Actinidia chinensis HOM05D004632 ORTHO05D005556 1.2e-33 149.1 143 59.4
Hma1.2p1_0059F.1_g032640 Hydrangea macrophylla HOM05D004632 ORTHO05D005556 3.7e-30 137.5 292 90.1
Sabra18G0022500 Salix brachista HOM05D004632 ORTHO05D005556 3.6e-25 120.9 285 36.5
Actinidia09762 Actinidia chinensis HOM05D004632 ORTHO05D005556 4.9e-22 110.5 66 78.8
Cre12.g526950 Chlamydomonas reinhardtii HOM05D004632 ORTHO05D005556 6.6e-19 100.1 521 23.4
Glyma.14G103500 Glycine max HOM05D004632 ORTHO05D005556 3.3e-18 97.8 106 50.9
SEGI_30848 Sequoiadendron giganteum HOM05D004632 ORTHO05D005556 2.1e-17 95.1 75 62.7
SEGI_29407 Sequoiadendron giganteum HOM05D004632 ORTHO05D005556 1.8e-16 92.0 86 48.8
FAN15G3250 Fragaria x ananassa HOM05D004632 ORTHO05D005556 1.3e-14 85.9 53 90.6
MD15G1038900 Malus domestica HOM05D004632 ORTHO05D005556 1.9e-13 82.0 55 81.8
SEGI_21073 Sequoiadendron giganteum HOM05D004632 ORTHO05D005556 1.2e-09 69.3 50 70.0
Glyma.14G103600 Glycine max HOM05D004632 ORTHO05D005556 1.6e-09 68.9 48 70.8
Haze_26425 Corylus avellana HOM05D004632 ORTHO05D005556 1.1e-08 66.2 185 28.6
Actinidia10512 Actinidia chinensis HOM05D004632 ORTHO05D005556 1.8e-08 65.5 84 42.9
Cfa022837 Carpinus fangiana HOM05D004632 ORTHO05D005556 9.0e-08 63.2 490 21.6
Actinidia36729 Actinidia chinensis HOM05D004632 ORTHO05D005556 2.9e-06 58.2 135 30.4
Dinv40325 Davidia involucrata HOM05D004632 ORTHO05D005556 2.9e-06 58.2 37 70.3


User provided reference genes

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