Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g39240 Fragaria vesca HOM05D001587 ORTHO05D008791 1.1e-201 706.4 361 100.0
FAN27G1828 Fragaria x ananassa HOM05D001587 ORTHO05D008791 2.6e-195 685.3 381 93.4
FAN15G0115 Fragaria x ananassa HOM05D001587 ORTHO05D008791 2.1e-192 675.6 397 88.9
RcHm_v2.0_Chr6g0301771 Rosa chinensis HOM05D001587 ORTHO05D008791 3.9e-183 644.8 367 90.7
Prupe.1G373400 Prunus persica HOM05D001587 ORTHO05D008791 6.5e-154 547.7 374 77.8
MD15G1021600 Malus domestica HOM05D001587 ORTHO05D008791 3.6e-152 542.0 369 78.0
FAN20G2929 Fragaria x ananassa HOM05D001587 ORTHO05D008791 1.4e-151 540.0 311 90.7
CANSAT35G0963 Cannabis sativa HOM05D001587 ORTHO05D008791 1.1e-137 493.8 370 71.6
Atru.chr13.396 Acer truncatum HOM05D001587 ORTHO05D008791 9.4e-137 490.7 366 72.4
Gorai.010G007600 Gossypium raimondii HOM05D001587 ORTHO05D008791 1.0e-135 487.3 361 73.1
Gohir.D06G002700 Gossypium hirsutum HOM05D001587 ORTHO05D008791 3.4e-134 482.3 361 72.6
Thecc.08G034500 Theobroma cacao HOM05D001587 ORTHO05D008791 1.7e-133 479.9 362 72.4
GSVIVG01009782001 Vitis vinifera HOM05D001587 ORTHO05D008791 3.7e-133 478.8 362 71.5
Manes.05G154300 Manihot esculenta HOM05D001587 ORTHO05D008791 9.1e-132 474.2 366 71.9
COL.COLO4_26234 Corchorus olitorius HOM05D001587 ORTHO05D008791 2.7e-131 472.6 360 71.1
Duzib041G0293 Durio zibethinus HOM05D001587 ORTHO05D008791 3.5e-131 472.2 361 70.6
Hma1.2p1_1194F.1_g265710 Hydrangea macrophylla HOM05D001587 ORTHO05D008791 1.7e-130 469.9 340 72.9
TWI56G0852 Tripterygium wilfordii HOM05D001587 ORTHO05D008791 2.2e-130 469.5 360 70.0
QL02p010191 Quercus lobata HOM05D001587 ORTHO05D008791 2.9e-130 469.2 353 71.7
Ciclev10001571m.g Citrus clementina HOM05D001587 ORTHO05D008791 8.5e-130 467.6 366 69.7
Potri.005G232200 Populus trichocarpa HOM05D001587 ORTHO05D008791 3.2e-129 465.7 359 69.9
Cpa.g.sc99.13 Carica papaya HOM05D001587 ORTHO05D008791 4.2e-129 465.3 350 71.1
ECA247G3480 Erigeron canadensis HOM05D001587 ORTHO05D008791 8.8e-127 457.6 324 72.8
Sabra05G0179100 Salix brachista HOM05D001587 ORTHO05D002654 2.8e-125 452.6 291 78.4
Sed0025916 Sechium edule HOM05D001587 ORTHO05D008791 2.8e-125 452.6 366 67.2
Eucgr.F01602 Eucalyptus grandis HOM05D001587 ORTHO05D008791 3.7e-125 452.2 365 67.1
CSS0005575 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D008791 4.9e-125 451.8 304 77.0
CSS0021558 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D008791 8.3e-125 451.1 304 76.6
CsaV3_2G029060 Cucumis sativus L. HOM05D001587 ORTHO05D008791 1.1e-124 450.7 357 68.9
Lsat_1_v5_gn_1_17201 Lactuca sativa HOM05D001587 ORTHO05D008791 3.1e-124 449.1 307 75.2
MELO3C010971.2 Cucumis melo HOM05D001587 ORTHO05D008791 5.4e-124 448.4 356 68.0
AT1G45110 Arabidopsis thaliana HOM05D001587 ORTHO05D008791 9.2e-124 447.6 311 72.7
HanXRQChr04g0099151 Helianthus annuus HOM05D001587 ORTHO05D008791 1.2e-123 447.2 303 76.2
TPR.G12317 Trifolium pratense HOM05D001587 ORTHO05D008791 3.5e-123 445.7 366 66.9
Lj4A33T83 Lonicera japonica HOM05D001587 ORTHO05D008791 4.5e-123 445.3 296 77.4
BcaC08g42893 Brassica carinata HOM05D001587 ORTHO05D008791 7.7e-123 444.5 332 69.0
C06p01170 Brassica napus HOM05D001587 ORTHO05D008791 7.7e-123 444.5 332 69.0
BolC6t35253H Brassica oleracea HOM05D001587 ORTHO05D008791 7.7e-123 444.5 332 69.0
Carub.0001s3551 Capsella rubella HOM05D001587 ORTHO05D008791 1.7e-122 443.4 327 69.7
Cc10_g02390 Coffea canephora HOM05D001587 ORTHO05D008791 1.7e-122 443.4 297 75.8
Glyma.06G029000 Glycine max HOM05D001587 ORTHO05D008791 1.7e-122 443.4 359 66.6
AL1G52680 Arabidopsis lyrata HOM05D001587 ORTHO05D008791 2.3e-122 443.0 324 70.7
A10p07100 Brassica napus HOM05D001587 ORTHO05D008791 2.9e-122 442.6 327 69.4
BraA10t42958Z Brassica rapa HOM05D001587 ORTHO05D008791 2.9e-122 442.6 305 73.4
Sp1g33880 Schrenkiella parvula HOM05D001587 ORTHO05D008791 2.9e-122 442.6 312 72.1
Thhalv10011622m.g Eutrema salsugineum HOM05D001587 ORTHO05D008791 6.6e-122 441.4 311 72.3
BcaB07g33894 Brassica carinata HOM05D001587 ORTHO05D008791 8.6e-122 441.0 349 66.5
Lj1g0011689 Lotus japonicus HOM05D001587 ORTHO05D008791 1.1e-121 440.7 352 66.5
Phvul.009G060300 Phaseolus vulgaris HOM05D001587 ORTHO05D008791 1.5e-121 440.3 360 65.8
Lalb_Chr08g0245991 Lupinus albus HOM05D001587 ORTHO05D008791 7.3e-121 438.0 318 70.4
CAN.G851.40 Capsicum annuum HOM05D001587 ORTHO05D008791 9.5e-121 437.6 315 70.5
CARHR036210 Cardamine hirsuta HOM05D001587 ORTHO05D008791 9.5e-121 437.6 317 70.7
THA.LOC104813319 Tarenaya hassleriana HOM05D001587 ORTHO05D008791 1.2e-120 437.2 291 75.3
Migut.C00772 Erythranthe guttata HOM05D001587 ORTHO05D008791 2.8e-120 436.0 366 65.0
Aqoxy6G01203 Aquilegia oxysepala HOM05D001587 ORTHO05D008791 4.7e-120 435.3 309 73.5
Sc15g0007180 Simmondsia chinensis HOM05D001587 ORTHO05D008791 8.0e-120 434.5 354 65.0
MBI11_g07616_MAGBIO Magnolia biondii HOM05D001587 ORTHO05D008791 1.0e-119 434.1 307 70.7
Sopen04g034390 Solanum pennellii HOM05D001587 ORTHO05D008791 1.4e-119 433.7 322 69.3
MSTRG.1247 Avicennia marina HOM05D001587 ORTHO05D008791 3.0e-119 432.6 364 66.5
Solyc04g080800.4 Solanum lycopersicum HOM05D001587 ORTHO05D008791 3.0e-119 432.6 322 69.3
Nn5g29720 Nelumbo nucifera HOM05D001587 ORTHO05D008791 4.0e-119 432.2 345 66.4
PGSC0003DMG400003752 Solanum tuberosum HOM05D001587 ORTHO05D008791 4.0e-119 432.2 322 68.9
Peaxi162Scf00189g00920 Petunia axillaris HOM05D001587 ORTHO05D008791 6.8e-119 431.4 325 69.2
Hund17199 Selenicereus undatus HOM05D001587 ORTHO05D008791 1.2e-118 430.6 324 71.0
Ah.05g180890 Amaranthus hybridus HOM05D001587 ORTHO05D008791 2.0e-118 429.9 305 70.2
PSO675G8960 Papaver somniferum HOM05D001587 ORTHO05D008791 2.6e-118 429.5 300 72.7
PSO541G2666 Papaver somniferum HOM05D001587 ORTHO05D008791 3.4e-118 429.1 300 71.7
Nitab4.5_0001861g0110 Nicotiana tabacum HOM05D001587 ORTHO05D008791 9.8e-118 427.6 323 68.7
AUR62034528 Chenopodium quinoa HOM05D001587 ORTHO05D008791 1.3e-117 427.2 314 71.0
Medtr3g112310 Medicago truncatula HOM05D001587 ORTHO05D008791 4.9e-117 425.2 336 67.3
EL10Ac1g00602 Beta vulgaris HOM05D001587 ORTHO05D008791 1.4e-116 423.7 328 67.4
Nitab4.5_0005779g0030 Nicotiana tabacum HOM05D001587 ORTHO05D008791 1.6e-115 420.2 282 74.8
Aa31sc185G120 Aethionema arabicum HOM05D001587 ORTHO05D008791 4.6e-115 418.7 385 60.5
Gohir.A06G007600 Gossypium hirsutum HOM05D001587 ORTHO05D008791 2.3e-114 416.4 348 65.5
CiPaw.07G156300 Carya illinoinensis HOM05D001587 ORTHO05D008791 3.3e-113 412.5 259 80.7
CDE04G1582 Ceratophyllum demersum HOM05D001587 ORTHO05D008791 7.3e-113 411.4 339 63.1
Os10g0414500 Oryza sativa ssp. japonica HOM05D001587 ORTHO05D008791 3.1e-111 406.0 321 65.1
VMungo1309G0203 Vigna mungo HOM05D001587 ORTHO05D008791 6.8e-111 404.8 338 65.7
Rhsim07G0243600 Rhododendron simsii HOM05D001587 ORTHO05D008791 1.2e-110 404.1 312 69.2
Zm00001eb048090 Zea mays HOM05D001587 ORTHO05D008791 9.8e-110 401.0 296 68.6
HPP92_024861 Vanilla planifolia HOM05D001587 ORTHO05D008791 6.0e-107 391.7 295 65.4
Haze_22561 Corylus avellana HOM05D001587 ORTHO05D008791 4.3e-105 385.6 416 56.7
MD08G1024000 Malus domestica HOM05D001587 ORTHO05D008791 2.3e-103 379.8 402 59.2
TAR628G1547 Trochodendron aralioides HOM05D001587 ORTHO05D008791 8.9e-103 377.9 360 60.0
unitig_578.g16081 Utricularia gibba HOM05D001587 ORTHO05D008791 1.5e-102 377.1 293 69.3
arahy.Tifrunner.gnm1.ann1.R2LLHR Arachis hypogaea HOM05D001587 ORTHO05D008791 2.0e-102 376.7 508 46.1
ClCG08G014710 Citrullus lanatus HOM05D001587 ORTHO05D008791 1.4e-100 370.5 354 60.5
arahy.Tifrunner.gnm1.ann1.F22IQH Arachis hypogaea HOM05D001587 ORTHO05D008791 3.0e-98 362.8 530 44.3
ATR0665G135 Amborella trichopoda HOM05D001587 ORTHO05D008791 5.6e-97 358.6 264 66.7
vmacro04308 Vaccinium macrocarpon HOM05D001587 ORTHO05D008791 5.6e-97 358.6 578 43.3
Dinv39461 Davidia involucrata HOM05D001587 ORTHO05D008791 9.9e-94 347.8 271 71.6
Ca_15490_v3 Cicer arietinum L. HOM05D001587 ORTHO05D008791 1.3e-93 347.4 287 63.4
Psat0s471g0160 Pisum sativum HOM05D001587 ORTHO05D008791 1.7e-93 347.1 235 72.8
Actinidia15364 Actinidia chinensis HOM05D001587 ORTHO05D002654 1.0e-90 337.8 235 74.0
AUR62014470 Chenopodium quinoa HOM05D001587 ORTHO05D008791 1.5e-89 334.0 227 72.7
Mapoly0042s0010 Marchantia polymorpha HOM05D001587 ORTHO05D008791 8.1e-88 328.2 278 59.0
SGA_v2.0_scaffold11G05847 Striga asiatica HOM05D001587 ORTHO05D008791 5.2e-87 325.5 277 65.7
SalBow7G1285 Salvia bowleyana HOM05D001587 ORTHO05D008791 1.3e-85 320.9 273 65.9
SMO169G0295 Selaginella moellendorffii HOM05D001587 ORTHO05D008791 6.4e-85 318.5 309 55.0
Pp3c23_9730 Physcomitrium patens HOM05D001587 ORTHO05D008791 1.6e-83 313.9 284 55.6
AagrBONN_evm.TU.Sc2ySwM_344.3744 Anthoceros agrestis HOM05D001587 ORTHO05D008791 7.3e-81 305.1 284 55.3
vmacro07875 Vaccinium macrocarpon HOM05D001587 ORTHO05D008791 4.2e-76 289.3 184 78.8
Ca_29810_v3 Cicer arietinum L. HOM05D001587 ORTHO05D008791 9.0e-63 245.0 204 68.1
Glyma.04G029000 Glycine max HOM05D001587 ORTHO05D008791 2.5e-57 226.9 142 76.8
Psat3g187600 Pisum sativum HOM05D001587 ORTHO05D008791 7.4e-57 225.3 170 65.3
Cre13.g572000 Chlamydomonas reinhardtii HOM05D001587 ORTHO05D008791 1.3e-56 224.6 302 42.4
AagrBONN_evm.TU.Sc2ySwM_344.3737 Anthoceros agrestis HOM05D001587 ORTHO05D008791 1.4e-55 221.1 191 59.2
Manes.18G021412 Manihot esculenta HOM05D001587 ORTHO05D008791 2.4e-55 220.3 359 44.3
Dinv31791 Davidia involucrata HOM05D001587 ORTHO05D002654 3.9e-50 203.0 197 58.4
Psat3g187640 Pisum sativum HOM05D001587 ORTHO05D008791 3.9e-50 203.0 201 55.7
PRCOL_00005810 Prasinoderma coloniale HOM05D001587 ORTHO05D008791 1.4e-47 194.5 311 37.9
MCO14G527 Micromonas commoda HOM05D001587 ORTHO05D008791 1.3e-45 188.0 199 48.2
Psat5g097560 Pisum sativum HOM05D000922 ORTHO05D008791 6.3e-40 169.1 216 45.4
Psat5g097640 Pisum sativum HOM05D000922 ORTHO05D001851 1.6e-35 154.5 209 43.1
AL1G52690 Arabidopsis lyrata HOM05D001587 ORTHO05D014867 4.8e-32 142.9 104 65.4
Hma1.2p1_1194F.1_g265720 Hydrangea macrophylla HOM05D001587 ORTHO05D014867 9.1e-31 138.7 101 69.3
CARHR174630 Cardamine hirsuta HOM05D001587 ORTHO05D014867 8.8e-26 122.1 90 66.7
SEGI_08976 Sequoiadendron giganteum HOM05D001587 ORTHO05D008791 5.7e-25 119.4 75 76.0
SEGI_23158 Sequoiadendron giganteum HOM05D001587 ORTHO05D008791 5.7e-25 119.4 75 76.0
Ca_02074_v3 Cicer arietinum L. HOM05D001587 ORTHO05D008791 2.2e-21 107.5 139 54.0
SEGI_08644 Sequoiadendron giganteum HOM05D001587 ORTHO05D014867 1.5e-17 94.7 77 55.8
Potri.002G030701 Populus trichocarpa HOM05D001587 ORTHO05D014867 4.8e-16 89.7 135 43.7
Psat4g126360 Pisum sativum HOM05D001587 ORTHO05D037360 3.1e-15 87.0 55 72.7
CARHR293210 Cardamine hirsuta HOM05D001587 ORTHO05D008791 9.1e-15 85.5 51 80.4
CSS0046073 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 3.8e-13 80.1 58 70.7
COL.COLO4_00685 Corchorus olitorius HOM05D030008 ORTHO05D034598 1.1e-12 78.6 155 32.3
CSS0001111 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 1.9e-12 77.8 58 69.0
CSS0020626 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 1.9e-12 77.8 58 69.0
CSS0029664 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 1.9e-12 77.8 58 69.0
CSS0031048 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 1.9e-12 77.8 58 69.0
CSS0048350 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 1.9e-12 77.8 58 69.0
CSS0002416 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 2.5e-12 77.4 58 69.0
CSS0016398 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 2.5e-12 77.4 58 69.0
Sabra02G0024500 Salix brachista HOM05D001587 ORTHO05D037360 4.9e-08 63.2 38 76.3
Psat2g069600 Pisum sativum HOM05D000263 ORTHO05D009363 2.7e-06 57.4 45 60.0


User provided reference genes

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