Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g36660 Fragaria vesca HOM05D004578 ORTHO05D005529 2.2e-268 928.3 450 100.0
FAN20G1103 Fragaria x ananassa HOM05D004578 ORTHO05D005529 1.5e-256 889.0 450 95.3
FAN27G0985 Fragaria x ananassa HOM05D004578 ORTHO05D005529 3.8e-236 821.2 403 96.8
FAN15G2443 Fragaria x ananassa HOM05D004578 ORTHO05D005529 5.5e-235 817.4 403 96.8
RcHm_v2.0_Chr6g0305131 Rosa chinensis HOM05D004578 ORTHO05D005529 2.8e-207 725.3 403 85.9
MD15G1106400 Malus domestica HOM05D004578 ORTHO05D005529 1.9e-203 712.6 403 82.1
Prupe.1G458600 Prunus persica HOM05D004578 ORTHO05D005529 9.4e-203 710.3 403 83.1
MD08G1126500 Malus domestica HOM05D004578 ORTHO05D005529 2.1e-202 709.1 403 82.1
Prupe.1G458900 Prunus persica HOM05D004578 ORTHO05D005529 4.4e-200 701.4 410 82.0
QL12p025440 Quercus lobata HOM05D004578 ORTHO05D005529 8.0e-186 654.1 398 74.4
Cfa013287 Carpinus fangiana HOM05D004578 ORTHO05D005529 3.4e-184 648.7 398 75.9
Sabra06G0211200 Salix brachista HOM05D004578 ORTHO05D005529 9.8e-184 647.1 401 75.8
Potri.018G008700 Populus trichocarpa HOM05D004578 ORTHO05D005529 8.3e-183 644.0 401 76.1
Duzib168G2341 Durio zibethinus HOM05D004578 ORTHO05D005529 2.0e-181 639.4 397 74.8
Cfa013284 Carpinus fangiana HOM05D004578 ORTHO05D005529 7.8e-181 637.5 398 74.6
Sabra18G0013200 Salix brachista HOM05D004578 ORTHO05D005529 7.8e-181 637.5 401 75.1
Sabra18G0015700 Salix brachista HOM05D004578 ORTHO05D005529 7.8e-181 637.5 401 75.1
Ciclev10008459m.g Citrus clementina HOM05D004578 ORTHO05D005529 2.3e-180 636.0 403 73.9
QL12p025516 Quercus lobata HOM05D004578 ORTHO05D005529 1.9e-179 632.9 402 71.9
Haze_21761 Corylus avellana HOM05D004578 ORTHO05D005529 4.3e-179 631.7 398 74.4
CiPaw.07G211300 Carya illinoinensis HOM05D004578 ORTHO05D005529 6.2e-178 627.9 399 73.4
COL.COLO4_19019 Corchorus olitorius HOM05D004578 ORTHO05D005529 1.4e-177 626.7 395 72.4
Manes.16G134500 Manihot esculenta HOM05D004578 ORTHO05D005529 1.4e-177 626.7 401 72.1
Potri.006G272800 Populus trichocarpa HOM05D004578 ORTHO05D005529 5.2e-177 624.8 400 74.2
Ciclev10008463m.g Citrus clementina HOM05D004578 ORTHO05D005529 1.5e-176 623.2 403 73.2
TWI32G0020 Tripterygium wilfordii HOM05D004578 ORTHO05D005529 1.5e-176 623.2 400 72.5
Prupe.1G458800 Prunus persica HOM05D004578 ORTHO05D005529 2.0e-176 622.9 406 75.4
Thecc.09G008600 Theobroma cacao HOM05D004578 ORTHO05D005529 1.3e-175 620.2 395 72.4
CiPaw.08G020700 Carya illinoinensis HOM05D004578 ORTHO05D005529 3.2e-174 615.5 398 71.6
CANSAT25G1430 Cannabis sativa HOM05D004578 ORTHO05D005529 7.8e-173 610.9 394 73.4
Gohir.A06G104800 Gossypium hirsutum HOM05D004578 ORTHO05D005529 3.0e-172 609.0 395 71.9
Manes.03G004800 Manihot esculenta HOM05D004578 ORTHO05D005529 3.0e-172 609.0 400 68.8
Atru.chr7.2661 Acer truncatum HOM05D004578 ORTHO05D005529 3.9e-172 608.6 404 71.8
Gohir.D06G107000 Gossypium hirsutum HOM05D004578 ORTHO05D005529 8.6e-172 607.4 396 72.0
Gorai.010G121600 Gossypium raimondii HOM05D004578 ORTHO05D005529 1.5e-171 606.7 396 71.7
Cfa013283 Carpinus fangiana HOM05D004578 ORTHO05D005529 2.8e-170 602.4 385 72.7
BolC4t26970H Brassica oleracea HOM05D004578 ORTHO05D005529 8.9e-169 597.4 398 70.4
A04p18950 Brassica napus HOM05D004578 ORTHO05D005529 1.2e-168 597.0 398 70.4
Thhalv10000150m.g Eutrema salsugineum HOM05D004578 ORTHO05D005529 1.5e-168 596.7 404 68.6
BraA04t17495Z Brassica rapa HOM05D004578 ORTHO05D005529 2.0e-168 596.3 398 70.4
BcaC02g08438 Brassica carinata HOM05D004578 ORTHO05D005529 2.6e-168 595.9 398 70.1
C04p54190 Brassica napus HOM05D004578 ORTHO05D005529 2.6e-168 595.9 398 70.1
Sp4g03570 Schrenkiella parvula HOM05D004578 ORTHO05D005529 6.4e-167 591.3 404 68.8
AL4G15160 Arabidopsis lyrata HOM05D004578 ORTHO05D005529 4.1e-166 588.6 396 69.9
Dinv04517 Davidia involucrata HOM05D004578 ORTHO05D005529 4.1e-166 588.6 409 69.9
Eucgr.C04012 Eucalyptus grandis HOM05D004578 ORTHO05D005529 5.4e-166 588.2 401 68.3
BcaB06g27986 Brassica carinata HOM05D004578 ORTHO05D005529 7.1e-166 587.8 398 68.8
CARHR117360 Cardamine hirsuta HOM05D004578 ORTHO05D005529 7.1e-166 587.8 396 68.4
Carub.0004s0400 Capsella rubella HOM05D004578 ORTHO05D005529 9.2e-166 587.4 404 67.8
Cpa.g.sc23.31 Carica papaya HOM05D004578 ORTHO05D005529 1.2e-165 587.0 401 68.6
ClCG05G026450 Citrullus lanatus HOM05D004578 ORTHO05D005529 1.3e-164 583.6 397 69.8
TAR625G0669 Trochodendron aralioides HOM05D004578 ORTHO05D005529 5.1e-164 581.6 401 67.8
AT2G24580 Arabidopsis thaliana HOM05D004578 ORTHO05D005529 8.6e-164 580.9 396 67.7
Peaxi162Scf00045g01734 Petunia axillaris HOM05D004578 ORTHO05D005529 3.3e-163 578.9 401 67.3
Nn8g40733 Nelumbo nucifera HOM05D004578 ORTHO05D005529 5.6e-163 578.2 418 67.0
CsaV3_3G047160 Cucumis sativus L. HOM05D004578 ORTHO05D005529 9.5e-163 577.4 396 68.4
THA.LOC104819936 Tarenaya hassleriana HOM05D004578 ORTHO05D005529 1.6e-162 576.6 396 69.2
Cc08_g06480 Coffea canephora HOM05D004578 ORTHO05D005529 3.6e-162 575.5 402 67.2
MELO3C003620.2 Cucumis melo HOM05D004578 ORTHO05D005529 2.4e-161 572.8 397 68.0
Aa31sc160G30 Aethionema arabicum HOM05D004578 ORTHO05D005529 1.2e-160 570.5 395 67.3
PSO063G3790 Papaver somniferum HOM05D004578 ORTHO05D005529 1.2e-160 570.5 402 65.7
PSO170G4894 Papaver somniferum HOM05D004578 ORTHO05D005529 2.0e-160 569.7 396 66.7
Aa31sc715G30 Aethionema arabicum HOM05D004578 ORTHO05D005529 4.4e-160 568.5 402 67.7
CSS0030954 Camellia sinensis var. sinensis HOM05D004578 ORTHO05D005529 4.4e-160 568.5 404 65.3
PGR044G1507 Punica granatum HOM05D004578 ORTHO05D005529 7.6e-160 567.8 396 65.9
Nitab4.5_0000555g0200 Nicotiana tabacum HOM05D004578 ORTHO05D005529 1.7e-159 566.6 401 67.8
Sed0023873 Sechium edule HOM05D004578 ORTHO05D005529 2.2e-159 566.2 396 68.2
Actinidia06432 Actinidia chinensis HOM05D004578 ORTHO05D005529 1.6e-157 560.1 412 63.6
CAN.G673.19 Capsicum annuum HOM05D004578 ORTHO05D005529 1.6e-157 560.1 401 64.8
vmacro18918 Vaccinium macrocarpon HOM05D004578 ORTHO05D005529 4.6e-157 558.5 404 65.8
BcaC02g08437 Brassica carinata HOM05D004578 ORTHO05D005529 5.1e-156 555.1 397 66.0
Aqoxy7G02848 Aquilegia oxysepala HOM05D004578 ORTHO05D005529 6.6e-156 554.7 401 64.6
Medtr3g108990 Medicago truncatula HOM05D004578 ORTHO05D005529 6.6e-156 554.7 385 66.5
Solyc08g006430.4 Solanum lycopersicum HOM05D004578 ORTHO05D005529 1.1e-155 553.9 406 62.8
Ca_15651_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 1.5e-155 553.5 386 67.4
Ca_15659_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 1.5e-155 553.5 386 67.4
Eucgr.C04016 Eucalyptus grandis HOM05D004578 ORTHO05D005529 1.9e-155 553.1 393 64.4
PGSC0003DMG400026320 Solanum tuberosum HOM05D004578 ORTHO05D005529 9.6e-155 550.8 394 64.0
TAR383G0560 Trochodendron aralioides HOM05D004578 ORTHO05D005529 3.6e-154 548.9 394 64.7
Nitab4.5_0004131g0050 Nicotiana tabacum HOM05D004578 ORTHO05D005529 4.7e-154 548.5 384 67.7
Sopen08g002370 Solanum pennellii HOM05D004578 ORTHO05D005529 1.8e-153 546.6 401 62.3
TAR383G1032 Trochodendron aralioides HOM05D004578 ORTHO05D005529 1.8e-153 546.6 394 64.2
TPR.G12360 Trifolium pratense HOM05D004578 ORTHO05D005529 4.0e-153 545.4 392 63.8
Lj7P748T39 Lonicera japonica HOM05D004578 ORTHO05D005529 6.9e-153 544.7 385 66.0
DCAR_000687 Daucus carota HOM05D004578 ORTHO05D005529 9.0e-153 544.3 402 61.7
Eucgr.C04014 Eucalyptus grandis HOM05D004578 ORTHO05D005529 9.0e-153 544.3 389 64.3
VMungo1309G1783 Vigna mungo HOM05D004578 ORTHO05D005529 9.0e-153 544.3 385 65.5
Glyma.04G076300 Glycine max HOM05D004578 ORTHO05D005529 2.0e-152 543.1 392 64.0
Ca_15652_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 1.1e-150 537.3 373 67.8
Ca_15660_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 1.1e-150 537.3 373 67.8
Lj1g0024454 Lotus japonicus HOM05D004578 ORTHO05D005529 1.1e-150 537.3 385 64.7
Medtr3g109010 Medicago truncatula HOM05D004578 ORTHO05D005529 1.1e-150 537.3 393 62.8
AUR62020290 Chenopodium quinoa HOM05D004578 ORTHO05D005529 3.2e-150 535.8 397 62.7
MBI16_g05839_MAGBIO Magnolia biondii HOM05D004578 ORTHO05D005529 7.1e-150 534.6 403 61.3
Rhsim10G0084800 Rhododendron simsii HOM05D004578 ORTHO05D005529 7.1e-150 534.6 387 65.4
Migut.A00428 Erythranthe guttata HOM05D004578 ORTHO05D005529 9.3e-150 534.3 400 63.5
Cc00_g13120 Coffea canephora HOM05D004578 ORTHO05D005529 1.2e-149 533.9 402 61.9
Phvul.009G102000 Phaseolus vulgaris HOM05D004578 ORTHO05D005529 3.5e-149 532.3 385 64.4
MBI13_g34048_MAGBIO Magnolia biondii HOM05D004578 ORTHO05D005529 4.6e-149 531.9 398 62.8
AUR62037713 Chenopodium quinoa HOM05D004578 ORTHO05D005529 6.0e-149 531.6 394 62.4
EL10Ac2g02417 Beta vulgaris HOM05D004578 ORTHO05D005529 1.0e-148 530.8 405 60.0
TPR.G12429 Trifolium pratense HOM05D004578 ORTHO05D005529 1.0e-148 530.8 385 64.7
arahy.Tifrunner.gnm1.ann1.M0AD1K Arachis hypogaea HOM05D004578 ORTHO05D005529 1.3e-148 530.4 389 63.0
Ah.13g067790 Amaranthus hybridus HOM05D004578 ORTHO05D005529 2.3e-148 529.6 395 62.8
arahy.Tifrunner.gnm1.ann1.W2ETIH Arachis hypogaea HOM05D004578 ORTHO05D005529 8.7e-148 527.7 389 63.0
Hund13109 Selenicereus undatus HOM05D004578 ORTHO05D005529 1.5e-147 526.9 396 60.9
Psat5g024080 Pisum sativum HOM05D004578 ORTHO05D005529 4.3e-147 525.4 385 61.6
HanXRQChr15g0466441 Helianthus annuus HOM05D004578 ORTHO05D005529 5.3e-145 518.5 409 59.2
Lsat_1_v5_gn_9_4341 Lactuca sativa HOM05D004578 ORTHO05D005529 9.0e-145 517.7 415 59.3
ECA247G3559 Erigeron canadensis HOM05D004578 ORTHO05D005529 2.6e-144 516.2 410 59.0
SalBow4G0906 Salvia bowleyana HOM05D004578 ORTHO05D005529 4.5e-144 515.4 404 60.4
Sc07g0007360 Simmondsia chinensis HOM05D004578 ORTHO05D005529 1.1e-142 510.8 405 59.5
MSTRG.25795 Avicennia marina HOM05D004578 ORTHO05D005529 3.2e-142 509.2 402 59.2
SGA_v2.0_scaffold193G40672 Striga asiatica HOM05D004578 ORTHO05D005529 7.9e-141 504.6 395 61.3
CDE02G4459 Ceratophyllum demersum HOM05D004578 ORTHO05D005529 6.2e-138 495.0 392 59.4
HanXRQChr10g0282951 Helianthus annuus HOM05D004578 ORTHO05D005529 1.4e-137 493.8 411 57.2
Actinidia22261 Actinidia chinensis HOM05D004578 ORTHO05D005529 9.6e-131 471.1 411 56.9
Lalb_Chr11g0064181 Lupinus albus HOM05D004578 ORTHO05D005529 1.5e-128 463.8 391 56.0
unitig_32.g11237 Utricularia gibba HOM05D004578 ORTHO05D005529 1.4e-126 457.2 394 55.8
Os09g0498500 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 9.7e-123 444.5 406 54.9
Zm00001eb317190 Zea mays HOM05D004578 ORTHO05D005529 6.3e-122 441.8 404 53.2
ATR0626G173 Amborella trichopoda HOM05D004578 ORTHO05D005529 7.7e-120 434.9 406 53.9
SEGI_31206 Sequoiadendron giganteum HOM05D004578 ORTHO05D005529 1.9e-118 430.3 414 51.9
SEGI_11947 Sequoiadendron giganteum HOM05D004578 ORTHO05D005529 4.3e-115 419.1 411 50.9
Zm00001eb127180 Zea mays HOM05D004578 ORTHO05D005529 1.7e-114 417.2 404 53.2
Os01g0316100 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 7.7e-112 408.3 401 51.9
Os12g0543600 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 7.2e-110 401.7 376 53.5
Zm00001eb340420 Zea mays HOM05D004578 ORTHO05D005529 7.9e-109 398.3 397 52.4
Mapoly0152s0014 Marchantia polymorpha HOM05D004578 ORTHO05D005529 4.5e-104 382.5 408 47.3
Pp3c9_3640 Physcomitrium patens HOM05D004578 ORTHO05D005529 2.9e-103 379.8 411 46.2
AagrBONN_evm.TU.Sc2ySwM_368.3376 Anthoceros agrestis HOM05D004578 ORTHO05D005529 1.1e-97 361.3 393 47.8
Gohir.D06G106866 Gossypium hirsutum HOM05D004578 ORTHO05D005529 1.2e-96 357.8 396 49.7
Zm00001eb140430 Zea mays HOM05D004578 ORTHO05D005529 3.5e-96 356.3 406 47.5
SMO115G0125 Selaginella moellendorffii HOM05D004578 ORTHO05D005529 4.2e-94 349.4 404 44.3
Psat5g025320 Pisum sativum HOM05D004578 ORTHO05D005529 1.4e-89 334.3 258 62.0
Gorai.010G121400 Gossypium raimondii HOM05D004578 ORTHO05D005529 1.9e-86 323.9 396 44.9
Oeu018556.1 Olea europaea HOM05D004578 ORTHO05D005529 2.6e-83 313.5 401 42.9
HPP92_017393 Vanilla planifolia HOM05D004578 ORTHO05D005529 4.1e-81 306.2 392 42.1
Cfa013285 Carpinus fangiana HOM05D004578 ORTHO05D005529 1.7e-79 300.8 229 64.6
Hma1.2p1_1588F.1_g292320 Hydrangea macrophylla HOM05D004578 ORTHO05D005529 1.7e-79 300.8 404 44.1
Oeu008773.1 Olea europaea HOM05D004578 ORTHO05D005529 1.5e-78 297.7 394 42.1
GSVIVG01033177001 Vitis vinifera HOM05D004578 ORTHO05D005529 4.2e-78 296.2 401 41.1
unitig_32.g11239 Utricularia gibba HOM05D004578 ORTHO05D005529 3.6e-61 240.0 186 58.1
Lalb_Chr23g0269171 Lupinus albus HOM05D004578 ORTHO05D005529 5.2e-60 236.1 156 67.3
PRCOL_00000645 Prasinoderma coloniale HOM05D004578 ORTHO05D005529 7.3e-54 215.7 421 33.0
HanXRQChr10g0282961 Helianthus annuus HOM05D004578 ORTHO05D005529 7.1e-41 172.6 154 54.5
Cc08_g06580 Coffea canephora HOM05D004578 ORTHO05D005529 3.4e-35 153.7 119 59.7
Ca_28680_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 1.9e-33 147.9 394 27.4
unitig_32.g11238 Utricularia gibba HOM05D004578 ORTHO05D005529 5.4e-33 146.4 98 70.4
Actinidia22262 Actinidia chinensis HOM05D004578 ORTHO05D005529 2.8e-29 134.0 320 28.1
TPR.G12332 Trifolium pratense HOM05D004578 ORTHO05D005529 8.1e-29 132.5 78 75.6
Cre12.g493500 Chlamydomonas reinhardtii HOM05D004578 ORTHO05D005529 6.5e-18 96.3 403 26.1
COL.COLO4_30024 Corchorus olitorius HOM05D004578 ORTHO05D005529 5.0e-10 70.1 45 66.7
Psat2g052560 Pisum sativum HOM05D004790 ORTHO05D005678 1.2e-08 65.5 47 55.3
Psat0s2347g0040 Pisum sativum HOM05D004578 ORTHO05D005529 1.6e-08 65.1 58 53.4
VMungo1041G0001 Vigna mungo HOM05D004578 ORTHO05D005529 8.7e-07 59.3 42 71.4


User provided reference genes

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