Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g33220 Fragaria vesca HOM05D001879 ORTHO05D007648 0.0e+00 1683.7 870 100.0
FAN24G0874 Fragaria x ananassa HOM05D001879 ORTHO05D007648 0.0e+00 1595.5 911 92.3
FAN27G0954 Fragaria x ananassa HOM05D001879 ORTHO05D007648 0.0e+00 1580.5 854 95.8
FAN20G0949 Fragaria x ananassa HOM05D001879 ORTHO05D007648 0.0e+00 1575.8 847 96.5
FAN15G3244 Fragaria x ananassa HOM05D001879 ORTHO05D007648 0.0e+00 1574.7 890 92.7
RcHm_v2.0_Chr6g0309441 Rosa chinensis HOM05D001879 ORTHO05D007648 0.0e+00 1408.7 812 88.4
Prupe.1G423900 Prunus persica HOM05D001879 ORTHO05D007648 0.0e+00 1138.3 883 70.4
MD08G1086000 Malus domestica HOM05D001879 ORTHO05D007648 0.0e+00 1087.8 864 68.1
Cfa013681 Carpinus fangiana HOM05D001879 ORTHO05D007648 4.7e-243 845.1 1004 51.1
Atru.chr13.820 Acer truncatum HOM05D001879 ORTHO05D007648 9.3e-239 830.9 892 52.8
Ciclev10003334m.g Citrus clementina HOM05D001879 ORTHO05D007648 9.0e-234 814.3 858 54.3
Dinv44962 Davidia involucrata HOM05D001879 ORTHO05D007648 7.1e-231 804.7 1019 48.5
Manes.05G181200 Manihot esculenta HOM05D001879 ORTHO05D007648 2.5e-228 796.2 781 55.6
Thecc.08G090000 Theobroma cacao HOM05D001879 ORTHO05D007648 6.2e-227 791.6 807 54.6
Haze_22324 Corylus avellana HOM05D001879 ORTHO05D007648 2.0e-225 786.6 870 52.1
QL12p037902 Quercus lobata HOM05D001879 ORTHO05D007648 7.6e-225 784.6 999 49.2
COL.COLO4_28516 Corchorus olitorius HOM05D001879 ORTHO05D007957 6.0e-222 775.0 878 50.6
Actinidia10192 Actinidia chinensis HOM05D001879 ORTHO05D007648 3.3e-220 769.2 890 51.5
CANSAT25G1585 Cannabis sativa HOM05D001879 ORTHO05D007648 1.6e-219 766.9 1011 45.6
GSVIVG01009356001 Vitis vinifera HOM05D001879 ORTHO05D007648 3.7e-219 765.8 899 50.8
CSS0015613 Camellia sinensis var. sinensis HOM05D001879 ORTHO05D007648 5.3e-218 761.9 768 56.5
Potri.014G017000 Populus trichocarpa HOM05D001879 ORTHO05D007648 7.1e-215 751.5 752 55.7
Sabra14G0010800 Salix brachista HOM05D001879 ORTHO05D007648 4.5e-209 732.3 817 52.1
CiPaw.07G175900 Carya illinoinensis HOM05D001879 ORTHO05D007648 1.3e-205 720.7 913 48.6
Gohir.D05G212700 Gossypium hirsutum HOM05D001879 ORTHO05D007648 1.8e-205 720.3 814 50.0
Lj4A759T48 Lonicera japonica HOM05D001879 ORTHO05D007648 1.5e-204 717.2 962 46.6
TWI56G1003 Tripterygium wilfordii HOM05D001879 ORTHO05D007648 7.4e-204 714.9 780 51.4
Gohir.A05G209500 Gossypium hirsutum HOM05D001879 ORTHO05D007648 1.3e-203 714.1 803 50.2
Gorai.009G219200 Gossypium raimondii HOM05D001879 ORTHO05D007648 3.1e-202 709.5 803 49.6
Rhsim07G0220800 Rhododendron simsii HOM05D001879 ORTHO05D007648 1.0e-200 704.5 763 53.3
Glyma.14G088600 Glycine max HOM05D001879 ORTHO05D007648 2.1e-198 696.8 1016 44.5
Glyma.17G235900 Glycine max HOM05D001879 ORTHO05D007648 6.1e-198 695.3 818 51.8
VMungo0647G0280 Vigna mungo HOM05D001879 ORTHO05D007648 1.0e-197 694.5 1021 43.7
Lj5g0015061 Lotus japonicus HOM05D001879 ORTHO05D007648 1.4e-197 694.1 790 52.0
Nn5g30557 Nelumbo nucifera HOM05D001879 ORTHO05D007648 1.5e-196 690.6 1040 41.9
Phvul.001G026900 Phaseolus vulgaris HOM05D001879 ORTHO05D007648 5.3e-194 682.2 811 49.2
TAR633G2582 Trochodendron aralioides HOM05D001879 ORTHO05D007648 2.6e-193 679.9 1036 42.6
ClCG05G020550 Citrullus lanatus HOM05D001879 ORTHO05D007648 2.5e-191 673.3 791 49.9
MELO3C016811.2 Cucumis melo HOM05D001879 ORTHO05D007648 7.9e-190 668.3 1009 43.3
Medtr1g018350 Medicago truncatula HOM05D001879 ORTHO05D007648 1.0e-189 667.9 803 48.9
CsaV3_4G034990 Cucumis sativus L. HOM05D001879 ORTHO05D007648 3.0e-189 666.4 792 51.0
TPR.G3779 Trifolium pratense HOM05D001879 ORTHO05D007648 4.4e-188 662.5 972 42.8
Psat6g016280 Pisum sativum HOM05D001879 ORTHO05D007648 1.5e-183 647.5 805 47.7
Lalb_Chr22g0355581 Lupinus albus HOM05D001879 ORTHO05D007648 5.7e-180 635.6 813 46.5
Sed0027780 Sechium edule HOM05D001879 ORTHO05D007648 7.7e-177 625.2 792 46.3
PGR031G1956 Punica granatum HOM05D001879 ORTHO05D007957 1.1e-175 621.3 724 50.0
Cpa.g.sc142.15 Carica papaya HOM05D001879 ORTHO05D007648 4.2e-175 619.4 758 48.5
arahy.Tifrunner.gnm1.ann1.6NC3R4 Arachis hypogaea HOM05D001879 ORTHO05D007648 1.2e-174 617.8 727 48.8
Lalb_Chr24g0399421 Lupinus albus HOM05D001879 ORTHO05D007648 2.1e-174 617.1 789 48.4
arahy.Tifrunner.gnm1.ann1.0QZG7W Arachis hypogaea HOM05D001879 ORTHO05D007648 2.7e-174 616.7 784 48.7
SalBow7G0276 Salvia bowleyana HOM05D001879 ORTHO05D007648 4.0e-165 586.3 716 46.6
Nitab4.5_0000164g0150 Nicotiana tabacum HOM05D001879 ORTHO05D007648 1.5e-164 584.3 796 46.5
Sopen04g031540 Solanum pennellii HOM05D001879 ORTHO05D007648 7.0e-162 575.5 744 46.0
Oeu022102.3 Olea europaea HOM05D001879 ORTHO05D007648 3.5e-161 573.2 785 44.2
Nitab4.5_0003803g0020 Nicotiana tabacum HOM05D001879 ORTHO05D007648 7.8e-161 572.0 889 43.4
AT1G27750 Arabidopsis thaliana HOM05D001879 ORTHO05D007648 7.3e-159 565.5 824 42.2
MSTRG.1026 Avicennia marina HOM05D001879 ORTHO05D007648 4.7e-158 562.8 776 44.3
AL1G41280 Arabidopsis lyrata HOM05D001879 ORTHO05D007648 1.8e-157 560.8 836 42.9
Thhalv10006638m.g Eutrema salsugineum HOM05D001879 ORTHO05D007648 2.3e-157 560.5 817 42.1
Sc15g0005720 Simmondsia chinensis HOM05D001879 ORTHO05D007648 8.9e-157 558.5 894 40.8
Cc10_g05690 Coffea canephora HOM05D001879 ORTHO05D007648 4.4e-156 556.2 865 41.5
DCAR_008854 Daucus carota HOM05D001879 ORTHO05D007648 5.8e-156 555.8 812 42.6
Lsat_1_v5_gn_1_24340 Lactuca sativa HOM05D001879 ORTHO05D007648 1.7e-155 554.3 788 43.3
Sp1g23980 Schrenkiella parvula HOM05D001879 ORTHO05D007648 2.2e-155 553.9 831 41.9
Aa31sc113G20 Aethionema arabicum HOM05D001879 ORTHO05D007648 7.3e-151 538.9 796 40.6
BolC5t31365H Brassica oleracea HOM05D001879 ORTHO05D007648 1.2e-150 538.1 849 39.5
Carub.0001s2626 Capsella rubella HOM05D001879 ORTHO05D007648 4.7e-150 536.2 763 42.9
C05p26440 Brassica napus HOM05D001879 ORTHO05D007648 1.4e-149 534.6 849 39.2
Ah.05g167110 Amaranthus hybridus HOM05D001879 ORTHO05D007957 3.1e-149 533.5 785 41.7
EL10Ac1g02391 Beta vulgaris HOM05D001879 ORTHO05D007648 3.1e-149 533.5 775 41.7
A09p38350 Brassica napus HOM05D001879 ORTHO05D007648 3.1e-149 533.5 735 43.7
BraA09t39344Z Brassica rapa HOM05D001879 ORTHO05D007648 4.0e-149 533.1 853 40.3
ECA247G3074 Erigeron canadensis HOM05D001879 ORTHO05D007648 1.2e-145 521.5 792 42.0
AUR62038814 Chenopodium quinoa HOM05D001879 ORTHO05D007648 2.0e-145 520.8 817 40.0
Peaxi162Scf00081g01617 Petunia axillaris HOM05D001879 ORTHO05D007648 1.3e-144 518.1 778 41.9
Eucgr.F02258 Eucalyptus grandis HOM05D001879 ORTHO05D007648 4.7e-142 509.6 659 45.7
SGA_v2.0_scaffold238G43965 Striga asiatica HOM05D001879 ORTHO05D007648 1.1e-141 508.4 744 41.8
Hund24034 Selenicereus undatus HOM05D001879 ORTHO05D007648 2.3e-136 490.7 778 40.4
AUR62037434 Chenopodium quinoa HOM05D001879 ORTHO05D007648 5.1e-136 489.6 757 40.3
CDE06G0223 Ceratophyllum demersum HOM05D001879 ORTHO05D007648 2.8e-134 483.8 811 38.1
HPP92_019611 Vanilla planifolia HOM05D001879 ORTHO05D007648 8.1e-134 482.3 880 37.3
ATR0208G021 Amborella trichopoda HOM05D001879 ORTHO05D007648 5.2e-133 479.6 884 38.6
HanXRQChr08g0220641 Helianthus annuus HOM05D001879 ORTHO05D007648 5.2e-133 479.6 795 39.0
PSO017G6116 Papaver somniferum HOM05D001879 ORTHO05D007648 1.1e-130 471.9 773 41.1
BcaC05g26775 Brassica carinata HOM05D001879 ORTHO05D007648 1.1e-125 455.3 736 38.7
TAR381G0870 Trochodendron aralioides HOM05D001879 ORTHO05D007648 5.8e-124 449.5 567 46.7
Aqoxy5G00884 Aquilegia oxysepala HOM05D001879 ORTHO05D007648 9.9e-124 448.7 669 42.2
Solyc04g077940.4 Solanum lycopersicum HOM05D001879 ORTHO05D007648 1.2e-121 441.8 701 40.8
SEGI_08589 Sequoiadendron giganteum HOM05D001879 ORTHO05D007648 7.6e-108 396.0 793 35.8
CARHR027260 Cardamine hirsuta HOM05D001879 ORTHO05D007648 1.3e-83 315.5 530 39.8
Ca_13228_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007648 6.5e-83 313.2 352 49.7
Zm00001eb152180 Zea mays HOM05D001879 ORTHO05D007648 1.4e-82 312.0 679 32.4
SHI08393 Sapria himalayana HOM05D001879 ORTHO05D007648 2.4e-77 294.7 325 48.0
Ca_14462_v3 Cicer arietinum L. HOM05D001879 ORTHO05D000002 1.3e-75 288.9 428 41.4
Os01g0765200 Oryza sativa ssp. japonica HOM05D001879 ORTHO05D007648 1.5e-66 258.8 317 43.2
Pp3c24_10810 Physcomitrium patens HOM05D001879 ORTHO05D007648 4.0e-56 224.2 841 27.0
Ca_22944_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007648 7.7e-52 209.9 430 36.0
Ca_13223_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007648 6.6e-51 206.8 431 33.4
AagrBONN_evm.TU.Sc2ySwM_117.1790 Anthoceros agrestis HOM05D001879 ORTHO05D007648 1.1e-42 179.5 701 25.5
Ca_20160_v3 Cicer arietinum L. HOM05D001879 ORTHO05D009627 8.0e-41 173.3 202 47.5
Ca_09349_v3 Cicer arietinum L. HOM05D000083 ORTHO05D002968 3.9e-35 154.5 216 42.6
SHI08394 Sapria himalayana HOM05D001879 ORTHO05D007648 9.5e-34 149.8 218 40.8
SMO143G0029 Selaginella moellendorffii HOM05D001879 ORTHO05D007648 1.9e-29 135.6 703 23.0
Duzib116G0273 Durio zibethinus HOM05D001879 ORTHO05D007648 1.7e-27 129.0 249 36.5
Os01g0765300 Oryza sativa ssp. japonica HOM05D001879 ORTHO05D007648 5.6e-26 124.0 153 41.8
Mapoly0006s0231 Marchantia polymorpha HOM05D001879 ORTHO05D007648 6.2e-25 120.6 629 26.7
Ca_31153_v3 Cicer arietinum L. HOM05D001879 ORTHO05D009627 2.2e-22 112.1 132 48.5
C07p17470 Brassica napus HOM05D001879 ORTHO05D007648 1.6e-20 105.9 103 53.4
BolC7t42252H Brassica oleracea HOM05D001879 ORTHO05D007648 1.6e-20 105.9 89 56.2
CBR_g6612 Chara braunii HOM05D001879 ORTHO05D007648 1.9e-18 99.0 173 32.9
Haze_22323 Corylus avellana HOM05D001879 ORTHO05D007648 2.8e-17 95.1 112 61.6
Psat1g176800 Pisum sativum HOM05D004029 ORTHO05D004613 5.8e-15 87.4 59 66.1
AL4G19860 Arabidopsis lyrata HOM05D001879 ORTHO05D007648 6.4e-14 84.0 122 41.8
BcaC06g35318 Brassica carinata HOM05D011004 ORTHO05D014493 2.3e-11 75.5 278 27.0
CBR_g6294 Chara braunii HOM05D001879 ORTHO05D007648 3.9e-11 74.7 165 25.5
BolC7t42255H Brassica oleracea HOM05D001879 ORTHO05D007648 5.1e-11 74.3 113 38.1
PGSC0003DMG400024244 Solanum tuberosum HOM05D001879 ORTHO05D007648 5.1e-11 74.3 78 44.9
PGSC0003DMG400024243 Solanum tuberosum HOM05D001879 ORTHO05D007648 8.7e-11 73.6 78 43.6
Sopen05g013150 Solanum pennellii HOM05D001879 ORTHO05D007648 1.9e-10 72.4 74 48.6
Cpa.g.sc142.16 Carica papaya HOM05D001879 ORTHO05D007648 2.5e-10 72.0 69 50.7
Psat3g051440 Pisum sativum HOM05D005615 ORTHO05D031631 2.8e-09 68.6 87 47.1
BcaC06g35319 Brassica carinata HOM05D001879 ORTHO05D007648 6.2e-09 67.4 53 58.5
Solyc04g077950.2 Solanum lycopersicum HOM05D001879 ORTHO05D007648 1.8e-08 65.9 44 63.6
arahy.Tifrunner.gnm1.ann1.4H8PLX Arachis hypogaea HOM05D001879 ORTHO05D021484 6.9e-08 63.9 135 30.4
Cfa010207 Carpinus fangiana HOM05D001879 ORTHO05D007648 6.9e-08 63.9 45 66.7
Psat5g005720 Pisum sativum HOM05D001879 ORTHO05D007648 1.5e-07 62.8 107 39.3
Lalb_Chr22g0355591 Lupinus albus HOM05D001879 ORTHO05D007648 3.4e-07 61.6 74 44.6
AL4G14580 Arabidopsis lyrata HOM05D031540 ORTHO05D014741 1.7e-06 59.3 58 51.7
arahy.Tifrunner.gnm1.ann1.CWP81L Arachis hypogaea HOM05D001879 ORTHO05D021484 8.4e-06 57.0 87 33.3


User provided reference genes

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