Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g25610 Fragaria vesca HOM05D003469 ORTHO05D004084 0.0e+00 1631.7 848 100.0
FAN24G3399 Fragaria x ananassa HOM05D003469 ORTHO05D004084 0.0e+00 1598.9 902 93.7
FAN15G0576 Fragaria x ananassa HOM05D003469 ORTHO05D004084 0.0e+00 1561.2 903 90.9
FAN27G0386 Fragaria x ananassa HOM05D003469 ORTHO05D004084 0.0e+00 1461.0 902 86.6
RcHm_v2.0_Chr6g0293861 Rosa chinensis HOM05D003469 ORTHO05D004084 0.0e+00 1402.9 904 82.5
FvH4_6g37900 Fragaria vesca HOM05D003469 ORTHO05D004084 5.5e-252 874.8 947 55.0
FAN14G5376 Fragaria x ananassa HOM05D003469 ORTHO05D004084 1.6e-251 873.2 947 55.0
FAN02G0848 Fragaria x ananassa HOM05D003469 ORTHO05D004084 2.8e-248 862.4 947 54.2
RcHm_v2.0_Chr2g0151101 Rosa chinensis HOM05D003469 ORTHO05D004084 1.1e-247 860.5 937 55.0
FAN09G4617 Fragaria x ananassa HOM05D003469 ORTHO05D004084 7.1e-244 847.8 947 53.6
RcHm_v2.0_Chr2g0151071 Rosa chinensis HOM05D003469 ORTHO05D004084 1.8e-242 843.2 947 53.4
Prupe.8G070000 Prunus persica HOM05D003469 ORTHO05D004084 2.3e-234 816.2 941 52.6
MD09G1155000 Malus domestica HOM05D003469 ORTHO05D004084 1.8e-223 780.0 943 50.2
CiPaw.03G010300 Carya illinoinensis HOM05D003469 ORTHO05D004084 3.5e-214 749.2 877 49.5
Thecc.08G168800 Theobroma cacao HOM05D003469 ORTHO05D004084 1.4e-207 727.2 882 48.4
TAR628G0771 Trochodendron aralioides HOM05D003469 ORTHO05D004084 2.9e-205 719.5 880 47.8
Duzib235G0325 Durio zibethinus HOM05D003469 ORTHO05D004084 1.2e-201 707.6 823 50.2
GSVIVG01036699001 Vitis vinifera HOM05D003469 ORTHO05D004084 8.3e-200 701.4 929 45.1
Nn5g27173 Nelumbo nucifera HOM05D003469 ORTHO05D004084 1.1e-199 701.0 880 46.1
Phvul.011G031000 Phaseolus vulgaris HOM05D003469 ORTHO05D004084 2.3e-194 683.3 885 46.8
arahy.Tifrunner.gnm1.ann1.046I3L Arachis hypogaea HOM05D003469 ORTHO05D004084 2.2e-192 676.8 868 45.2
Gorai.008G247300 Gossypium raimondii HOM05D003469 ORTHO05D004084 2.2e-192 676.8 864 46.8
CANSAT78G0348 Cannabis sativa HOM05D003469 ORTHO05D004084 3.7e-192 676.0 892 46.0
Glyma.12G027700 Glycine max HOM05D003469 ORTHO05D004084 1.1e-191 674.5 884 45.6
arahy.Tifrunner.gnm1.ann1.M9HC5A Arachis hypogaea HOM05D003469 ORTHO05D004084 2.4e-191 673.3 892 44.2
AUR62031062 Chenopodium quinoa HOM05D003469 ORTHO05D004084 5.4e-191 672.2 833 47.9
Dinv28114 Davidia involucrata HOM05D003469 ORTHO05D004084 2.7e-190 669.8 880 45.9
Actinidia21939 Actinidia chinensis HOM05D003469 ORTHO05D004084 5.9e-190 668.7 885 44.5
Gohir.D12G231100 Gossypium hirsutum HOM05D003469 ORTHO05D004084 1.0e-189 667.9 864 46.2
Lalb_Chr07g0195581 Lupinus albus HOM05D003469 ORTHO05D004084 5.0e-189 665.6 897 45.2
Gohir.A12G230000 Gossypium hirsutum HOM05D003469 ORTHO05D004084 8.6e-189 664.8 864 46.3
Glyma.11G102000 Glycine max HOM05D003469 ORTHO05D004084 9.5e-188 661.4 884 44.9
MELO3C013095.2 Cucumis melo HOM05D003469 ORTHO05D004084 2.1e-187 660.2 955 43.6
Eucgr.G01221 Eucalyptus grandis HOM05D003469 ORTHO05D004084 2.3e-186 656.8 885 45.1
ClCG07G013810 Citrullus lanatus HOM05D003469 ORTHO05D004084 8.9e-186 654.8 882 44.0
Lj1g0005967 Lotus japonicus HOM05D003469 ORTHO05D004084 2.0e-185 653.7 875 45.3
CsaV3_3G043790 Cucumis sativus L. HOM05D003469 ORTHO05D004084 2.2e-184 650.2 960 43.0
MBI03_g18641_MAGBIO Magnolia biondii HOM05D003469 ORTHO05D004084 2.9e-184 649.8 882 44.2
Sc09g0010840 Simmondsia chinensis HOM05D003469 ORTHO05D004084 6.4e-184 648.7 886 45.1
AUR62008300 Chenopodium quinoa HOM05D003469 ORTHO05D004084 1.4e-183 647.5 881 44.6
Solyc06g063420.4 Solanum lycopersicum HOM05D003469 ORTHO05D004084 1.8e-183 647.1 888 43.7
Sopen06g022880 Solanum pennellii HOM05D003469 ORTHO05D004084 5.4e-183 645.6 888 43.9
TWI38G1177 Tripterygium wilfordii HOM05D003469 ORTHO05D004084 5.4e-183 645.6 867 44.6
Atru.chr9.1130 Acer truncatum HOM05D003469 ORTHO05D004084 5.9e-182 642.1 881 43.4
PSO170G4646 Papaver somniferum HOM05D003469 ORTHO05D004084 5.0e-181 639.0 887 44.2
Rhsim12G0000800 Rhododendron simsii HOM05D003469 ORTHO05D004084 5.0e-181 639.0 772 47.8
EL10Ac5g10861 Beta vulgaris HOM05D003469 ORTHO05D004084 1.5e-180 637.5 909 43.7
Cc00_g11470 Coffea canephora HOM05D003469 ORTHO05D004084 2.5e-180 636.7 865 44.9
ECA232G2309 Erigeron canadensis HOM05D003469 ORTHO05D004084 1.6e-179 634.0 871 43.7
VMungo1127G1455 Vigna mungo HOM05D003469 ORTHO05D004084 4.7e-179 632.5 872 44.5
MSTRG.1003 Avicennia marina HOM05D003469 ORTHO05D004084 6.2e-179 632.1 856 44.2
Sed0013857 Sechium edule HOM05D003469 ORTHO05D004084 5.2e-178 629.0 882 42.6
Aqoxy6G00028 Aquilegia oxysepala HOM05D003469 ORTHO05D004084 1.4e-175 620.9 884 43.8
Migut.C00329 Erythranthe guttata HOM05D003469 ORTHO05D004084 7.0e-175 618.6 860 43.3
CSS0010807 Camellia sinensis var. sinensis HOM05D003469 ORTHO05D004084 5.0e-173 612.5 941 41.9
Hund09398 Selenicereus undatus HOM05D003469 ORTHO05D004084 8.6e-173 611.7 880 43.0
HanXRQChr09g0266911 Helianthus annuus HOM05D003469 ORTHO05D004084 2.1e-166 590.5 862 42.3
Lj9C173G0 Lonicera japonica HOM05D003469 ORTHO05D004084 3.5e-166 589.7 878 44.2
SalBow7G2370 Salvia bowleyana HOM05D003469 ORTHO05D004084 8.6e-165 585.1 899 41.6
QL09p054764 Quercus lobata HOM05D003469 ORTHO05D004084 2.5e-164 583.6 786 44.7
Medtr4g074860 Medicago truncatula HOM05D003469 ORTHO05D004084 1.6e-163 580.9 905 41.0
TPR.G38733 Trifolium pratense HOM05D003469 ORTHO05D004084 6.2e-163 578.9 868 42.1
Manes.06G016500 Manihot esculenta HOM05D003469 ORTHO05D004084 1.4e-162 577.8 846 42.8
Medtr4g079390 Medicago truncatula HOM05D003469 ORTHO05D004084 5.8e-161 572.4 863 41.9
DCAR_001477 Daucus carota HOM05D003469 ORTHO05D004084 9.9e-161 571.6 875 42.4
Lj9C162G1 Lonicera japonica HOM05D003469 ORTHO05D004084 1.3e-160 571.2 919 41.9
Peaxi162Scf00818g00323 Petunia axillaris HOM05D003469 ORTHO05D004084 7.8e-158 562.0 845 41.8
Nitab4.5_0003757g0100 Nicotiana tabacum HOM05D003469 ORTHO05D004084 1.0e-157 561.6 903 40.9
Potri.013G128900 Populus trichocarpa HOM05D003469 ORTHO05D004084 1.6e-155 554.3 862 41.6
Os11g0266800 Oryza sativa ssp. japonica HOM05D003469 ORTHO05D004084 3.1e-154 550.1 889 39.1
Nitab4.5_0002906g0070 Nicotiana tabacum HOM05D003469 ORTHO05D004084 4.0e-154 549.7 878 38.6
Aqoxy4G02849 Aquilegia oxysepala HOM05D003469 ORTHO05D004084 6.9e-154 548.9 864 40.5
HPP92_015320 Vanilla planifolia HOM05D003469 ORTHO05D004084 1.5e-153 547.7 856 40.8
Lsat_1_v5_gn_4_131841 Lactuca sativa HOM05D003469 ORTHO05D004084 2.6e-153 547.0 865 40.8
Nitab4.5_0005224g0040 Nicotiana tabacum HOM05D003469 ORTHO05D004084 2.6e-153 547.0 884 38.2
CAN.G14.42 Capsicum annuum HOM05D003469 ORTHO05D004084 5.4e-151 539.3 889 39.4
SGA_v2.0_scaffold8G04312 Striga asiatica HOM05D003469 ORTHO05D004084 1.3e-149 534.6 932 38.7
unitig_26.g9845 Utricularia gibba HOM05D003469 ORTHO05D004084 1.6e-147 527.7 889 39.0
THA.LOC104807542 Tarenaya hassleriana HOM05D003469 ORTHO05D004084 7.9e-142 508.8 862 38.7
Thhalv10006758m.g Eutrema salsugineum HOM05D003469 ORTHO05D004084 1.3e-141 508.1 879 37.2
A06p13570 Brassica napus HOM05D003469 ORTHO05D004084 1.5e-140 504.6 865 37.9
BraA06t24509Z Brassica rapa HOM05D003469 ORTHO05D004084 1.5e-140 504.6 865 37.9
C05p16090 Brassica napus HOM05D003469 ORTHO05D004084 3.3e-140 503.4 865 37.9
BolC5t30309H Brassica oleracea HOM05D003469 ORTHO05D004084 4.3e-140 503.1 865 37.8
AT1G17680 Arabidopsis thaliana HOM05D003469 ORTHO05D004084 5.6e-140 502.7 865 38.2
BcaC05g25689 Brassica carinata HOM05D003469 ORTHO05D004084 5.6e-140 502.7 881 37.6
Peaxi162Scf00015g00107 Petunia axillaris HOM05D003469 ORTHO05D004084 7.4e-140 502.3 881 37.9
Carub.0001s1741 Capsella rubella HOM05D003469 ORTHO05D004084 1.1e-138 498.4 862 38.1
AL1G30030 Arabidopsis lyrata HOM05D003469 ORTHO05D004084 3.8e-136 490.0 862 37.2
BcaB07g34024 Brassica carinata HOM05D003469 ORTHO05D004084 4.9e-136 489.6 862 36.9
Dinv15687 Davidia involucrata HOM05D003469 ORTHO05D004084 6.4e-136 489.2 878 38.5
BolC4t22588H Brassica oleracea HOM05D003469 ORTHO05D004084 3.2e-135 486.9 862 37.0
Ciclev10026956m.g Citrus clementina HOM05D003469 ORTHO05D004084 5.5e-135 486.1 790 42.0
Nitab4.5_0002354g0130 Nicotiana tabacum HOM05D003469 ORTHO05D004084 1.2e-134 485.0 865 39.1
BcaC02g11929 Brassica carinata HOM05D003469 ORTHO05D004084 6.0e-134 482.6 862 37.1
AUR62039415 Chenopodium quinoa HOM05D003469 ORTHO05D004084 3.9e-133 479.9 684 43.3
TPR.G32330 Trifolium pratense HOM05D003469 ORTHO05D004084 6.7e-133 479.2 786 40.2
SMO164G0159 Selaginella moellendorffii HOM05D003469 ORTHO05D004084 3.3e-132 476.9 889 35.1
vmacro00914 Vaccinium macrocarpon HOM05D003469 ORTHO05D004084 1.1e-130 471.9 1343 29.8
Mapoly0024s0108 Marchantia polymorpha HOM05D003469 ORTHO05D004084 8.4e-128 462.2 851 35.0
Aa31LG7G2510 Aethionema arabicum HOM05D003469 ORTHO05D004084 3.2e-127 460.3 860 35.9
C04p09790 Brassica napus HOM05D003469 ORTHO05D004084 4.8e-123 446.4 877 35.6
FvH4_6g38050 Fragaria vesca HOM05D003469 ORTHO05D004084 1.5e-121 441.4 723 41.9
Ciclev10019721m.g Citrus clementina HOM05D003469 ORTHO05D004084 5.9e-121 439.5 470 52.1
Haze_14033 Corylus avellana HOM05D003469 ORTHO05D004084 7.6e-121 439.1 564 46.3
Lj9A422T76 Lonicera japonica HOM05D003469 ORTHO05D004084 3.2e-119 433.7 742 40.3
Pp3c8_10360 Physcomitrium patens HOM05D003469 ORTHO05D004084 2.7e-118 430.6 902 34.7
Zm00001eb171180 Zea mays HOM05D003469 ORTHO05D004084 5.1e-117 426.4 722 37.8
MD17G1141100 Malus domestica HOM05D003469 ORTHO05D004084 2.4e-114 417.5 321 65.4
THA.LOC104800339 Tarenaya hassleriana HOM05D003469 ORTHO05D004084 1.2e-113 415.2 824 36.9
AagrBONN_evm.TU.Sc2ySwM_362.2764 Anthoceros agrestis HOM05D003469 ORTHO05D004084 7.9e-110 402.5 875 34.3
TAR633G1289 Trochodendron aralioides HOM05D003469 ORTHO05D004084 5.1e-109 399.8 422 53.3
CDE05G0531 Ceratophyllum demersum HOM05D003469 ORTHO05D004084 8.8e-109 399.1 468 49.8
Pp3c8_10366 Physcomitrium patens HOM05D003469 ORTHO05D004084 2.0e-108 397.9 861 33.9
Ah.15g095790 Amaranthus hybridus HOM05D003469 ORTHO05D004084 5.7e-108 396.4 1379 27.3
Ca_19034_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 1.3e-99 368.6 364 56.0
Sp1g15780 Schrenkiella parvula HOM05D003469 ORTHO05D004084 5.5e-95 353.2 443 44.5
PGSC0003DMG400033134 Solanum tuberosum HOM05D003469 ORTHO05D004084 1.5e-92 345.1 330 54.5
FAN20G2279 Fragaria x ananassa HOM05D003469 ORTHO05D004084 7.5e-92 342.8 472 44.7
FvH4_6g38030 Fragaria vesca HOM05D003469 ORTHO05D004084 1.9e-87 328.2 324 56.2
ATR1089G047 Amborella trichopoda HOM05D003469 ORTHO05D004084 4.2e-87 327.0 877 30.7
TAR633G1719 Trochodendron aralioides HOM05D003469 ORTHO05D004084 1.0e-80 305.8 337 49.0
C04p00480 Brassica napus HOM05D003469 ORTHO05D004084 1.0e-77 295.8 719 32.7
EL10Ac5g10434 Beta vulgaris HOM05D003469 ORTHO05D004084 5.7e-76 290.0 656 32.5
Oeu019664.1 Olea europaea HOM05D003469 ORTHO05D004084 5.7e-76 290.0 363 46.0
MD17G1141000 Malus domestica HOM05D003469 ORTHO05D004084 5.0e-72 276.9 403 42.2
SHI03012 Sapria himalayana HOM05D003469 ORTHO05D004084 4.7e-70 270.4 276 53.3
COL.COLO4_25121 Corchorus olitorius HOM05D003469 ORTHO05D004084 2.0e-68 265.0 359 43.5
Potri.013G129500 Populus trichocarpa HOM05D003469 ORTHO05D000003 4.6e-65 253.8 310 46.8
FAN20G1461 Fragaria x ananassa HOM05D003469 ORTHO05D004084 1.6e-62 245.4 161 79.5
HanXRQChr13g0406831 Helianthus annuus HOM05D003469 ORTHO05D004084 4.0e-61 240.7 186 60.2
CDE05G3544 Ceratophyllum demersum HOM05D003469 ORTHO05D004084 1.7e-56 225.3 333 41.4
Sp4g05240 Schrenkiella parvula HOM05D000751 ORTHO05D005618 2.1e-54 218.4 572 29.4
SEGI_08666 Sequoiadendron giganteum HOM05D003469 ORTHO05D004084 2.8e-54 218.0 177 58.2
SHI03015 Sapria himalayana HOM05D003469 ORTHO05D004084 6.8e-53 213.4 252 44.4
CBR_g36749 Chara braunii HOM05D003469 ORTHO05D004084 4.4e-52 210.7 1092 21.9
AUR62000094 Chenopodium quinoa HOM05D003469 ORTHO05D004084 3.5e-49 201.1 452 31.9
vmacro23125 Vaccinium macrocarpon HOM05D003469 ORTHO05D004084 1.0e-48 199.5 289 40.8
CARHR018280 Cardamine hirsuta HOM05D003469 ORTHO05D004084 2.5e-47 194.9 468 31.4
Cpa.g.sc21.245 Carica papaya HOM05D003469 ORTHO05D004084 6.2e-46 190.3 363 35.3
Ca_16139_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 6.2e-46 190.3 342 38.3
Thhalv10002713m.g Eutrema salsugineum HOM05D003469 ORTHO05D004084 2.0e-44 185.3 139 61.9
Medtr4g074690 Medicago truncatula HOM05D003469 ORTHO05D004084 3.8e-43 181.0 267 41.2
COL.COLO4_25120 Corchorus olitorius HOM05D003469 ORTHO05D004084 2.4e-37 161.8 348 36.2
Ciclev10020572m.g Citrus clementina HOM05D003469 ORTHO05D004084 1.2e-36 159.5 325 32.9
QL09p054785 Quercus lobata HOM05D003469 ORTHO05D004084 1.4e-34 152.5 169 53.8
Ca_16140_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 1.6e-33 149.1 162 50.6
Actinidia02459 Actinidia chinensis HOM05D003469 ORTHO05D004084 4.6e-33 147.5 119 57.1
BcaC02g12574 Brassica carinata HOM05D003469 ORTHO05D004084 1.0e-32 146.4 100 67.0
Cpa.g.sc21.244 Carica papaya HOM05D003469 ORTHO05D004084 1.1e-29 136.3 89 74.2
ECA232G2749 Erigeron canadensis HOM05D001807 ORTHO05D002044 2.4e-29 135.2 88 65.9
Cre10.g464950 Chlamydomonas reinhardtii HOM05D003469 ORTHO05D004084 1.1e-26 126.3 309 32.0
ATR0002G001 Amborella trichopoda HOM05D003469 ORTHO05D004084 5.4e-26 124.0 84 65.5
Oeu035042.1 Olea europaea HOM05D003469 ORTHO05D004084 1.2e-25 122.9 249 35.3
Sabra13G0107500 Salix brachista HOM05D000001 ORTHO05D000003 1.6e-25 122.5 184 45.7
Aa31LG2G17580 Aethionema arabicum HOM05D003469 ORTHO05D004084 4.6e-25 120.9 81 66.7
Rhsim02G0229800 Rhododendron simsii HOM05D000151 ORTHO05D000074 1.0e-24 119.8 80 71.2
Haze_14034 Corylus avellana HOM05D003469 ORTHO05D004084 1.3e-24 119.4 96 57.3
SEGI_05114 Sequoiadendron giganteum HOM05D003469 ORTHO05D004084 2.3e-24 118.6 148 45.9
Glyma.07G124800 Glycine max HOM05D003469 ORTHO05D004084 6.7e-24 117.1 159 42.8
C04p00500 Brassica napus HOM05D003469 ORTHO05D004084 2.6e-20 105.1 253 30.4
Ca_16137_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 1.7e-19 102.4 156 41.7
Oeu026515.1 Olea europaea HOM05D003469 ORTHO05D004084 3.2e-18 98.2 86 52.3
Lsat_1_v5_gn_0_35341 Lactuca sativa HOM05D003469 ORTHO05D004084 9.3e-18 96.7 100 47.0
BcaC02g12573 Brassica carinata HOM05D003469 ORTHO05D004084 6.0e-17 94.0 147 33.3
Psat0s3379g0080 Pisum sativum HOM05D003469 ORTHO05D004084 7.9e-17 93.6 195 33.8
SEGI_26656 Sequoiadendron giganteum HOM05D003469 ORTHO05D000001 3.9e-16 91.3 137 40.9
Cpa.g.sc21.247 Carica papaya HOM05D003469 ORTHO05D004084 5.3e-13 80.9 159 38.4
Haze_14035 Corylus avellana HOM05D003469 ORTHO05D004084 2.0e-12 79.0 194 34.0
Psat0s3379g0040 Pisum sativum HOM05D003469 ORTHO05D004084 2.9e-11 75.1 117 35.0
Sp4g05220 Schrenkiella parvula HOM05D003469 ORTHO05D004084 1.9e-10 72.4 51 62.7
AagrBONN_evm.TU.Sc2ySwM_362.2853 Anthoceros agrestis HOM05D003469 ORTHO05D004084 7.1e-10 70.5 99 41.4
Ca_19033_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 4.6e-09 67.8 57 52.6
PRCOL_00004204 Prasinoderma coloniale HOM05D003469 ORTHO05D004084 4.6e-09 67.8 135 37.0
SHI03013 Sapria himalayana HOM05D003469 ORTHO05D004084 2.3e-08 65.5 82 41.5


User provided reference genes

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