Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g25500 Fragaria vesca HOM05D004412 ORTHO05D005316 4.5e-149 531.2 259 100.0
FAN24G2667 Fragaria x ananassa HOM05D004412 ORTHO05D005316 1.5e-144 516.2 260 98.1
RcHm_v2.0_Chr6g0293711 Rosa chinensis HOM05D004412 ORTHO05D005316 1.1e-134 483.4 256 92.2
Prupe.8G259100 Prunus persica HOM05D004412 ORTHO05D005316 7.0e-126 454.1 259 84.9
MD03G1285900 Malus domestica HOM05D004412 ORTHO05D005316 1.2e-122 443.4 260 82.7
MD11G1305700 Malus domestica HOM05D004412 ORTHO05D005316 1.2e-120 436.8 260 81.5
Haze_04907 Corylus avellana HOM05D004412 ORTHO05D005316 4.1e-118 428.3 259 79.5
Thecc.01G297900 Theobroma cacao HOM05D004412 ORTHO05D005316 1.2e-117 426.8 259 79.5
Duzib211G0511 Durio zibethinus HOM05D004412 ORTHO05D005316 6.0e-117 424.5 260 78.8
Dinv19708 Davidia involucrata HOM05D004412 ORTHO05D005316 7.8e-117 424.1 258 79.8
Cfa005939 Carpinus fangiana HOM05D004412 ORTHO05D005316 3.9e-116 421.8 259 79.5
Gohir.D12G135400 Gossypium hirsutum HOM05D004412 ORTHO05D005316 5.0e-116 421.4 259 77.6
TAR362G0097 Trochodendron aralioides HOM05D004412 ORTHO05D005316 5.0e-116 421.4 257 77.4
COL.COLO4_23368 Corchorus olitorius HOM05D004412 ORTHO05D005316 6.6e-116 421.0 261 77.4
GSVIVG01027984001 Vitis vinifera HOM05D004412 ORTHO05D005316 8.6e-116 420.6 265 77.7
vmacro02463 Vaccinium macrocarpon HOM05D004412 ORTHO05D005316 1.5e-115 419.9 261 79.3
Gorai.008G146400 Gossypium raimondii HOM05D004412 ORTHO05D005316 3.3e-115 418.7 259 77.2
Potri.002G205800 Populus trichocarpa HOM05D004412 ORTHO05D005316 5.6e-115 417.9 259 77.2
Duzib138G0322 Durio zibethinus HOM05D004412 ORTHO05D005316 7.3e-115 417.5 259 76.8
Rhsim13G0011700 Rhododendron simsii HOM05D004412 ORTHO05D005316 7.3e-115 417.5 254 78.0
Lalb_Chr18g0047081 Lupinus albus HOM05D004412 ORTHO05D005316 9.5e-115 417.2 267 74.5
TWI14G0137 Tripterygium wilfordii HOM05D004412 ORTHO05D005316 1.2e-114 416.8 257 77.0
Glyma.03G213500 Glycine max HOM05D004412 ORTHO05D005316 4.7e-114 414.8 259 75.7
CANSAT25G2200 Cannabis sativa HOM05D004412 ORTHO05D005316 6.2e-114 414.5 258 75.6
CANSAT25G3274 Cannabis sativa HOM05D004412 ORTHO05D005316 6.2e-114 414.5 258 75.6
Lj2C1191G7 Lonicera japonica HOM05D004412 ORTHO05D005316 1.8e-113 412.9 275 71.3
TAR633G0484 Trochodendron aralioides HOM05D004412 ORTHO05D005316 2.3e-113 412.5 256 76.2
Medtr7g108680 Medicago truncatula HOM05D004412 ORTHO05D005316 2.6e-112 409.1 261 75.1
Potri.014G130900 Populus trichocarpa HOM05D004412 ORTHO05D005316 5.8e-112 407.9 256 75.8
Hma1.2p1_0491F.1_g164430 Hydrangea macrophylla HOM05D004412 ORTHO05D005316 2.2e-111 406.0 257 75.9
Ca_09149_v3 Cicer arietinum L. HOM05D004412 ORTHO05D005316 2.9e-111 405.6 267 73.8
Psat0s3188g0040 Pisum sativum HOM05D004412 ORTHO05D005316 3.7e-111 405.2 268 73.1
Gohir.D08G052500 Gossypium hirsutum HOM05D004412 ORTHO05D005316 4.9e-111 404.8 259 74.9
Ciclev10021279m.g Citrus clementina HOM05D004412 ORTHO05D005316 6.4e-111 404.4 268 73.1
Glyma.19G210300 Glycine max HOM05D004412 ORTHO05D005316 1.1e-110 403.7 275 71.3
Gohir.A08G042700 Gossypium hirsutum HOM05D004412 ORTHO05D005316 1.1e-110 403.7 259 74.5
TWI59G0713 Tripterygium wilfordii HOM05D004412 ORTHO05D005316 1.9e-110 402.9 257 75.1
Gorai.004G052600 Gossypium raimondii HOM05D004412 ORTHO05D005316 3.2e-110 402.1 259 74.5
Atru.chr5.1172 Acer truncatum HOM05D004412 ORTHO05D005316 4.1e-110 401.7 259 72.6
PGR119G0650 Punica granatum HOM05D004412 ORTHO05D005316 5.4e-110 401.4 257 72.4
TPR.G9643 Trifolium pratense HOM05D004412 ORTHO05D005316 7.0e-110 401.0 257 74.3
CsaV3_7G029140 Cucumis sativus L. HOM05D004412 ORTHO05D005316 1.2e-109 400.2 262 74.4
Manes.05G063600 Manihot esculenta HOM05D004412 ORTHO05D005316 4.6e-109 398.3 257 73.2
arahy.Tifrunner.gnm1.ann1.V4DRNI Arachis hypogaea HOM05D004412 ORTHO05D005316 6.0e-109 397.9 254 71.3
Lj1g0006783 Lotus japonicus HOM05D004412 ORTHO05D005316 1.0e-108 397.1 269 70.6
arahy.Tifrunner.gnm1.ann1.TC9I43 Arachis hypogaea HOM05D004412 ORTHO05D005316 1.7e-108 396.4 254 70.9
QL12p027258 Quercus lobata HOM05D004412 ORTHO05D005316 1.7e-108 396.4 256 73.8
arahy.Tifrunner.gnm1.ann1.E95WBF Arachis hypogaea HOM05D004412 ORTHO05D005316 3.9e-108 395.2 260 74.6
Phvul.001G206100 Phaseolus vulgaris HOM05D004412 ORTHO05D005316 6.6e-108 394.4 260 72.3
Eucgr.H01156 Eucalyptus grandis HOM05D004412 ORTHO05D005316 1.1e-107 393.7 265 70.6
THA.LOC104825974 Tarenaya hassleriana HOM05D004412 ORTHO05D005316 1.1e-107 393.7 257 72.8
arahy.Tifrunner.gnm1.ann1.K6REY5 Arachis hypogaea HOM05D004412 ORTHO05D005316 4.3e-107 391.7 260 73.8
DCAR_002821 Daucus carota HOM05D004412 ORTHO05D005316 1.2e-106 390.2 259 72.6
Migut.D00201 Erythranthe guttata HOM05D004412 ORTHO05D005316 1.2e-106 390.2 257 72.4
PSO302G0109 Papaver somniferum HOM05D004412 ORTHO05D005316 4.7e-106 388.3 259 71.0
ECA247G0114 Erigeron canadensis HOM05D004412 ORTHO05D005316 8.1e-106 387.5 261 70.1
Carub.0001s0201 Capsella rubella HOM05D004412 ORTHO05D005316 1.1e-105 387.1 257 70.4
Carub.0007s3652 Capsella rubella HOM05D004412 ORTHO05D005316 1.4e-105 386.7 257 70.4
PSO782G2310 Papaver somniferum HOM05D004412 ORTHO05D005316 3.1e-105 385.6 259 70.3
PSO210G7114 Papaver somniferum HOM05D004412 ORTHO05D005316 5.2e-105 384.8 258 70.5
HPP92_013717 Vanilla planifolia HOM05D004412 ORTHO05D005316 5.2e-105 384.8 257 69.6
DCAR_005799 Daucus carota HOM05D004412 ORTHO05D005316 6.8e-105 384.4 259 72.6
AT1G02880 Arabidopsis thaliana HOM05D004412 ORTHO05D005316 8.9e-105 384.0 257 70.4
AL1G12300 Arabidopsis lyrata HOM05D004412 ORTHO05D005316 1.5e-104 383.3 257 70.4
Sabra14G0097400 Salix brachista HOM05D004412 ORTHO05D005316 2.6e-104 382.5 292 64.4
Lsat_1_v5_gn_9_901 Lactuca sativa HOM05D004412 ORTHO05D005316 9.9e-104 380.6 257 70.8
BcaB03g15756 Brassica carinata HOM05D004412 ORTHO05D005316 2.9e-103 379.0 257 69.6
CAN.G339.23 Capsicum annuum HOM05D004412 ORTHO05D005316 8.3e-103 377.5 262 69.5
CDE05G1992 Ceratophyllum demersum HOM05D004412 ORTHO05D005316 1.1e-102 377.1 256 70.3
HanXRQChr10g0284561 Helianthus annuus HOM05D004412 ORTHO05D005316 1.1e-102 377.1 258 68.6
Thhalv10008492m.g Eutrema salsugineum HOM05D004412 ORTHO05D005316 1.4e-102 376.7 257 70.0
Aa31LG1G9690 Aethionema arabicum HOM05D004412 ORTHO05D005316 5.4e-102 374.8 257 68.5
ATR0693G457 Amborella trichopoda HOM05D004412 ORTHO05D005316 5.4e-102 374.8 256 69.9
MBI19_g12143_MAGBIO Magnolia biondii HOM05D004412 ORTHO05D005316 5.4e-102 374.8 319 60.8
AT2G44750 Arabidopsis thaliana HOM05D004412 ORTHO05D005316 7.1e-102 374.4 257 69.3
BcaB03g13500 Brassica carinata HOM05D004412 ORTHO05D005316 1.2e-101 373.6 257 68.5
A10p01550 Brassica napus HOM05D000147 ORTHO05D001254 1.2e-101 373.6 256 68.4
Oeu032104.1 Olea europaea HOM05D004412 ORTHO05D005316 1.2e-101 373.6 263 70.7
HanXRQChr15g0465781 Helianthus annuus HOM05D004412 ORTHO05D005316 2.1e-101 372.9 255 69.0
Peaxi162Scf00001g04911 Petunia axillaris HOM05D004412 ORTHO05D005316 3.5e-101 372.1 264 68.9
CDE11G0241 Ceratophyllum demersum HOM05D004412 ORTHO05D005316 7.8e-101 370.9 256 68.8
BolC5t28933H Brassica oleracea HOM05D004412 ORTHO05D005316 1.0e-100 370.5 259 68.3
BraA10t42430Z Brassica rapa HOM05D000147 ORTHO05D001254 1.0e-100 370.5 256 68.0
BcaC07g36986 Brassica carinata HOM05D004412 ORTHO05D005316 1.3e-100 370.2 257 68.1
BcaC07g36988 Brassica carinata HOM05D004412 ORTHO05D005316 1.3e-100 370.2 257 68.1
BcaC05g24629 Brassica carinata HOM05D004412 ORTHO05D005316 1.7e-100 369.8 256 68.4
A08p37550 Brassica napus HOM05D004412 ORTHO05D005316 1.7e-100 369.8 257 68.5
C05p01550 Brassica napus HOM05D000147 ORTHO05D001254 1.7e-100 369.8 256 68.4
Cc04_g10720 Coffea canephora HOM05D004412 ORTHO05D005316 1.7e-100 369.8 262 67.6
MSTRG.18165 Avicennia marina HOM05D004412 ORTHO05D005316 2.3e-100 369.4 257 70.8
C08p00300 Brassica napus HOM05D004412 ORTHO05D005316 2.3e-100 369.4 257 68.1
Sp1g01880 Schrenkiella parvula HOM05D004412 ORTHO05D005316 1.1e-99 367.1 257 67.7
Sopen09g029800 Solanum pennellii HOM05D004412 ORTHO05D005316 1.9e-99 366.3 257 67.7
Manes.01G217400 Manihot esculenta HOM05D004412 ORTHO05D005316 4.3e-99 365.2 216 77.8
Hund18137 Selenicereus undatus HOM05D004412 ORTHO05D005316 4.3e-99 365.2 253 67.2
BolC8t46831H Brassica oleracea HOM05D004412 ORTHO05D005316 9.5e-99 364.0 260 67.3
Zm00001eb142350 Zea mays HOM05D004412 ORTHO05D005316 9.5e-99 364.0 257 68.1
PSO832G3509 Papaver somniferum HOM05D004412 ORTHO05D005316 1.6e-98 363.2 257 68.5
Sc05g0004150 Simmondsia chinensis HOM05D004412 ORTHO05D005316 3.6e-98 362.1 256 66.8
CSS0010827 Camellia sinensis var. sinensis HOM05D004412 ORTHO05D005316 8.1e-98 360.9 239 74.9
Solyc09g074970.3 Solanum lycopersicum HOM05D004412 ORTHO05D005316 8.1e-98 360.9 259 67.2
ClCG09G005980 Citrullus lanatus HOM05D004412 ORTHO05D005316 1.4e-97 360.1 248 70.6
PGSC0003DMG401011372 Solanum tuberosum HOM05D004412 ORTHO05D005316 5.2e-97 358.2 257 66.1
Os05g0367400 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 2.9e-95 352.4 258 65.9
Nn4g25831 Nelumbo nucifera HOM05D004412 ORTHO05D005316 1.9e-94 349.7 213 77.5
SGA_v2.0_scaffold1G00376 Striga asiatica HOM05D004412 ORTHO05D005316 2.4e-94 349.4 258 67.8
SGA_v2.0_scaffold2G01402 Striga asiatica HOM05D002199 ORTHO05D007829 1.3e-92 343.6 257 66.9
Os01g0356500 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 3.0e-92 342.4 258 61.2
AUR62033109 Chenopodium quinoa HOM05D000147 ORTHO05D001254 8.7e-92 340.9 258 63.2
Aqoxy5G00729 Aquilegia oxysepala HOM05D004412 ORTHO05D005316 1.9e-91 339.7 211 75.8
AUR62008659 Chenopodium quinoa HOM05D004412 ORTHO05D005316 1.9e-91 339.7 258 63.2
EL10Ac2g03462 Beta vulgaris HOM05D004412 ORTHO05D005316 3.3e-91 339.0 270 61.5
QL12p026683 Quercus lobata HOM05D004412 ORTHO05D005316 5.6e-91 338.2 236 70.3
Gohir.A12G131600 Gossypium hirsutum HOM05D004412 ORTHO05D005316 3.6e-90 335.5 197 78.7
CiPaw.07G106900 Carya illinoinensis HOM05D004412 ORTHO05D005316 6.2e-90 334.7 195 81.0
Duzib211G0323 Durio zibethinus HOM05D004412 ORTHO05D005316 3.1e-89 332.4 197 80.2
BraA08t35652Z Brassica rapa HOM05D004412 ORTHO05D005316 2.2e-87 326.2 261 63.2
SalBow3G3296 Salvia bowleyana HOM05D002199 ORTHO05D007829 2.9e-87 325.9 213 71.8
Zm00001eb285500 Zea mays HOM05D004412 ORTHO05D005316 4.2e-86 322.0 243 64.2
Zm00001eb131550 Zea mays HOM05D004412 ORTHO05D005316 7.1e-86 321.2 273 56.0
Hund05414 Selenicereus undatus HOM05D004412 ORTHO05D005316 7.8e-85 317.8 211 67.8
MELO3C016014.2 Cucumis melo HOM05D004412 ORTHO05D005316 1.9e-83 313.2 191 79.1
Sed0017881 Sechium edule HOM05D004412 ORTHO05D005316 1.4e-81 307.0 191 73.8
Medtr8g058563 Medicago truncatula HOM05D004412 ORTHO05D005316 9.0e-81 304.3 186 78.0
CARHR002230 Cardamine hirsuta HOM05D004412 ORTHO05D005316 1.3e-79 300.4 257 58.8
Actinidia32228 Actinidia chinensis HOM05D004412 ORTHO05D005316 2.4e-78 296.2 204 69.1
Pp3c4_27720 Physcomitrium patens HOM05D004412 ORTHO05D005316 3.2e-78 295.8 231 60.2
Pp3c26_15150 Physcomitrium patens HOM05D004412 ORTHO05D005316 2.7e-77 292.7 230 60.4
Sabra02G0153500 Salix brachista HOM05D004412 ORTHO05D005316 5.1e-76 288.5 313 52.1
PGR119G0381 Punica granatum HOM05D004412 ORTHO05D005316 4.3e-75 285.4 227 63.0
Dinv33040 Davidia involucrata HOM05D004412 ORTHO05D005316 5.6e-75 285.0 170 78.8
AagrBONN_evm.TU.Sc2ySwM_362.2756 Anthoceros agrestis HOM05D004412 ORTHO05D005316 6.9e-73 278.1 254 55.1
Nitab4.5_0005515g0010 Nicotiana tabacum HOM05D004412 ORTHO05D005316 1.2e-69 267.3 363 45.2
Mapoly0113s0040 Marchantia polymorpha HOM05D004412 ORTHO05D005316 7.4e-67 258.1 232 53.9
unitig_0.g656 Utricularia gibba HOM05D004412 ORTHO05D005316 1.4e-65 253.8 182 67.0
Nitab4.5_0002469g0010 Nicotiana tabacum HOM05D004412 ORTHO05D005316 2.5e-59 233.0 266 50.8
SMO119G0015 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 2.0e-56 223.4 233 49.8
SHI29035 Sapria himalayana HOM05D004412 ORTHO05D005316 4.5e-56 222.2 215 54.0
SEGI_10498 Sequoiadendron giganteum HOM05D004412 ORTHO05D005316 5.9e-56 221.9 155 66.5
SMO304G0134 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 3.8e-55 219.2 179 57.5
Carub.0033s0005 Capsella rubella HOM05D004412 ORTHO05D005316 5.0e-47 192.2 137 65.0
CBR_g34735 Chara braunii HOM05D004412 ORTHO05D000002 3.2e-46 189.5 178 52.2
Nitab4.5_0001756g0180 Nicotiana tabacum HOM05D004412 ORTHO05D005316 6.1e-45 185.3 125 68.0
Lj1g0003703 Lotus japonicus HOM05D004412 ORTHO05D005316 2.3e-44 183.3 147 59.9
MCO04G072 Micromonas commoda HOM05D004412 ORTHO05D005316 1.3e-42 177.6 267 36.0
Nitab4.5_0000619g0170 Nicotiana tabacum HOM05D004412 ORTHO05D005316 2.0e-40 170.2 126 64.3
Nitab4.5_0001756g0260 Nicotiana tabacum HOM05D004412 ORTHO05D005316 2.9e-39 166.4 103 74.8
Cre01.g040050 Chlamydomonas reinhardtii HOM05D004412 ORTHO05D005316 1.0e-36 157.9 318 34.0
MD11G1034700 Malus domestica HOM05D004412 ORTHO05D005316 1.7e-34 150.6 174 51.1
SMO304G0108 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 6.3e-34 148.7 173 46.2
PRCOL_00001679 Prasinoderma coloniale HOM05D004412 ORTHO05D005316 3.1e-33 146.4 247 37.7
Cc01_g20710 Coffea canephora HOM05D004412 ORTHO05D005316 4.1e-33 146.0 96 71.9
SMO304G0017 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 9.4e-30 134.8 165 46.1
SEGI_14482 Sequoiadendron giganteum HOM05D004412 ORTHO05D005316 6.8e-28 128.6 102 62.7
Nitab4.5_0001756g0250 Nicotiana tabacum HOM05D004412 ORTHO05D005316 3.4e-27 126.3 126 50.8
FAN16G1537 Fragaria x ananassa HOM05D004412 ORTHO05D005316 2.0e-24 117.1 58 91.4
SHI29034 Sapria himalayana HOM05D000105 ORTHO05D000023 2.5e-22 110.2 79 64.6
SMO304G0077 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 3.0e-20 103.2 119 46.2
MD02G1044100 Malus domestica HOM05D004412 ORTHO05D005316 5.7e-19 99.0 54 90.7
MD06G1023300 Malus domestica HOM05D004412 ORTHO05D005316 5.7e-19 99.0 54 90.7
Os01g0931400 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 1.8e-17 94.0 80 60.0
BcaC05g24583 Brassica carinata HOM05D004412 ORTHO05D005316 1.1e-14 84.7 53 73.6
BcaB01g01260 Brassica carinata HOM05D004412 ORTHO05D093464 2.8e-10 70.1 49 63.3
CBR_g34733 Chara braunii HOM05D004412 ORTHO05D005316 6.3e-10 68.9 82 41.5
FAN05G3835 Fragaria x ananassa HOM05D025046 ORTHO05D205720 1.1e-09 68.2 51 60.8
MD02G1044000 Malus domestica HOM05D004412 ORTHO05D005316 1.8e-09 67.4 44 61.4
MD06G1023200 Malus domestica HOM05D004412 ORTHO05D005316 1.8e-09 67.4 44 61.4
AL4G43830 Arabidopsis lyrata HOM05D004412 ORTHO05D005316 5.4e-09 65.9 36 86.1
Duzib133G1297 Durio zibethinus HOM05D004412 ORTHO05D005316 1.1e-06 58.2 34 73.5


User provided reference genes

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