Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g24580 Fragaria vesca HOM05D004491 ORTHO05D006742 1.0e-235 819.7 412 100.0
FAN24G0196 Fragaria x ananassa HOM05D004491 ORTHO05D006742 6.6e-235 817.0 412 99.8
FAN20G1381 Fragaria x ananassa HOM05D004491 ORTHO05D006742 2.5e-234 815.1 412 99.3
FAN27G1423 Fragaria x ananassa HOM05D004491 ORTHO05D006742 2.8e-233 811.6 412 98.8
FAN15G2832 Fragaria x ananassa HOM05D004491 ORTHO05D006742 1.0e-232 809.7 412 98.8
RcHm_v2.0_Chr6g0292401 Rosa chinensis HOM05D004491 ORTHO05D006742 9.8e-223 776.5 412 93.7
Prupe.8G251000 Prunus persica HOM05D004491 ORTHO05D006742 1.6e-209 732.6 413 88.4
MD03G1274300 Malus domestica HOM05D004491 ORTHO05D006742 2.1e-204 715.7 410 86.1
ClCG01G000050 Citrullus lanatus HOM05D004491 ORTHO05D006742 1.5e-202 709.5 412 82.5
MD11G1296800 Malus domestica HOM05D004491 ORTHO05D006742 1.9e-202 709.1 413 85.2
MELO3C005918.2 Cucumis melo HOM05D004491 ORTHO05D006742 4.0e-200 701.4 412 81.6
CANSAT25G3440 Cannabis sativa HOM05D004491 ORTHO05D006742 1.2e-199 699.9 411 83.2
CsaV3_5G000130 Cucumis sativus L. HOM05D004491 ORTHO05D006742 7.6e-199 697.2 412 81.3
Actinidia24287 Actinidia chinensis HOM05D004491 ORTHO05D006742 1.9e-197 692.6 412 79.6
VMungo1383G0326 Vigna mungo HOM05D004491 ORTHO05D006742 1.2e-196 689.9 413 82.1
CiPaw.07G098600 Carya illinoinensis HOM05D004491 ORTHO05D006742 6.0e-196 687.6 410 80.7
Cfa006054 Carpinus fangiana HOM05D004491 ORTHO05D006742 3.9e-195 684.9 412 81.1
Phvul.001G201100 Phaseolus vulgaris HOM05D004491 ORTHO05D006742 3.9e-195 684.9 413 81.8
Haze_04798 Corylus avellana HOM05D004491 ORTHO05D006742 5.6e-194 681.0 412 80.6
TWI23G1267 Tripterygium wilfordii HOM05D004491 ORTHO05D006742 9.6e-194 680.2 412 81.6
Cc01_g20110 Coffea canephora HOM05D004491 ORTHO05D006742 1.3e-193 679.9 413 80.6
Nitab4.5_0003831g0010 Nicotiana tabacum HOM05D004491 ORTHO05D006742 1.3e-193 679.9 414 79.2
CSS0018382 Camellia sinensis var. sinensis HOM05D004491 ORTHO05D006742 1.6e-193 679.5 412 79.6
PGSC0003DMG400024040 Solanum tuberosum HOM05D004491 ORTHO05D006742 2.1e-193 679.1 412 79.1
Hma1.2p1_0209F.1_g089210 Hydrangea macrophylla HOM05D004491 ORTHO05D006742 6.2e-193 677.6 411 79.8
Sed0015582 Sechium edule HOM05D004491 ORTHO05D006742 6.2e-193 677.6 412 79.1
Glyma.19G205200 Glycine max HOM05D004491 ORTHO05D006742 2.4e-192 675.6 414 80.7
Lalb_Chr20g0111001 Lupinus albus HOM05D004491 ORTHO05D006742 2.4e-192 675.6 417 79.9
Nitab4.5_0002093g0130 Nicotiana tabacum HOM05D004491 ORTHO05D006742 3.1e-192 675.2 414 78.7
SGA_v2.0_scaffold44G16642 Striga asiatica HOM05D004491 ORTHO05D006742 3.1e-192 675.2 413 80.4
Glyma.03G207900 Glycine max HOM05D004491 ORTHO05D006742 4.0e-192 674.9 414 80.2
PGR044G0382 Punica granatum HOM05D004491 ORTHO05D006742 9.0e-192 673.7 414 80.2
Sed0005784 Sechium edule HOM05D004491 ORTHO05D006742 1.5e-191 672.9 412 78.6
Migut.F00598 Erythranthe guttata HOM05D004491 ORTHO05D006742 3.4e-191 671.8 412 78.2
SalBow3G0026 Salvia bowleyana HOM05D004491 ORTHO05D006742 4.4e-191 671.4 412 78.9
QL12p023667 Quercus lobata HOM05D004491 ORTHO05D006742 5.8e-191 671.0 409 80.0
Sopen06g035830 Solanum pennellii HOM05D004491 ORTHO05D006742 5.8e-191 671.0 412 77.9
Solyc06g084440.3 Solanum lycopersicum HOM05D004491 ORTHO05D006742 7.6e-191 670.6 412 77.9
Medtr7g107480 Medicago truncatula HOM05D004491 ORTHO05D006742 1.3e-190 669.8 415 80.2
Potri.014G135590 Populus trichocarpa HOM05D004491 ORTHO05D006742 1.3e-190 669.8 412 79.1
Lalb_Chr25g0287571 Lupinus albus HOM05D004491 ORTHO05D006742 1.7e-190 669.5 416 78.8
arahy.Tifrunner.gnm1.ann1.16527J Arachis hypogaea HOM05D004491 ORTHO05D006742 1.9e-189 666.0 416 79.3
Ca_09104_v3 Cicer arietinum L. HOM05D004491 ORTHO05D006742 1.9e-189 666.0 415 80.2
Manes.05G069700 Manihot esculenta HOM05D004491 ORTHO05D006742 2.4e-189 665.6 412 79.4
Psat3g025480 Pisum sativum HOM05D004491 ORTHO05D006742 2.4e-189 665.6 415 80.7
TAR636G1438 Trochodendron aralioides HOM05D004491 ORTHO05D006742 4.2e-189 664.8 410 77.6
Sabra14G0101900 Salix brachista HOM05D004491 ORTHO05D006742 5.4e-189 664.5 412 78.4
vmacro09158 Vaccinium macrocarpon HOM05D004491 ORTHO05D006742 5.4e-189 664.5 412 78.4
arahy.Tifrunner.gnm1.ann1.5A22SW Arachis hypogaea HOM05D004491 ORTHO05D006742 9.3e-189 663.7 416 78.8
Potri.002G213600 Populus trichocarpa HOM05D004491 ORTHO05D006742 9.3e-189 663.7 408 78.7
Eucgr.K03426 Eucalyptus grandis HOM05D004491 ORTHO05D006742 3.5e-188 661.8 413 78.9
Peaxi162Scf01039g00225 Petunia axillaris HOM05D004491 ORTHO05D006742 3.5e-188 661.8 413 77.5
Lsat_1_v5_gn_5_189841 Lactuca sativa HOM05D004491 ORTHO05D006742 6.0e-188 661.0 412 76.0
Lj1g0004162 Lotus japonicus HOM05D004491 ORTHO05D006742 6.0e-188 661.0 415 79.5
Sabra02G0149400 Salix brachista HOM05D004491 ORTHO05D006742 6.0e-188 661.0 409 78.2
Cpa.g.sc9.150 Carica papaya HOM05D004491 ORTHO05D006742 3.9e-187 658.3 411 78.6
TWI14G1187 Tripterygium wilfordii HOM05D004491 ORTHO05D006742 3.9e-187 658.3 412 78.6
MSTRG.27268 Avicennia marina HOM05D004491 ORTHO05D006742 1.9e-186 656.0 410 77.6
Rhsim13G0018200 Rhododendron simsii HOM05D004491 ORTHO05D006742 1.9e-186 656.0 415 78.1
Aqoxy5G00601 Aquilegia oxysepala HOM05D004491 ORTHO05D006742 7.3e-186 654.1 412 76.0
SGA_v2.0_scaffold60G20898 Striga asiatica HOM05D004491 ORTHO05D006742 1.3e-185 653.3 445 73.7
ECA248G1403 Erigeron canadensis HOM05D004491 ORTHO05D006742 2.9e-182 642.1 409 75.6
Atru.chr5.1296 Acer truncatum HOM05D004491 ORTHO05D006742 4.9e-182 641.3 412 76.0
MSTRG.8371 Avicennia marina HOM05D004491 ORTHO05D006742 4.9e-182 641.3 412 75.7
DCAR_012436 Daucus carota HOM05D004491 ORTHO05D006742 4.9e-182 641.3 414 75.8
Ciclev10011862m.g Citrus clementina HOM05D004491 ORTHO05D006742 1.1e-181 640.2 408 76.5
HanXRQChr11g0334841 Helianthus annuus HOM05D004491 ORTHO05D006742 1.2e-180 636.7 408 75.0
Oeu022805.1 Olea europaea HOM05D004491 ORTHO05D006742 2.7e-180 635.6 455 70.1
Thhalv10001466m.g Eutrema salsugineum HOM05D004491 ORTHO05D006742 3.9e-179 631.7 410 76.1
Nn3g21241 Nelumbo nucifera HOM05D004491 ORTHO05D006742 1.1e-178 630.2 413 74.8
vmacro09175 Vaccinium macrocarpon HOM05D004491 ORTHO05D006742 1.9e-178 629.4 479 66.8
BcaB02g08082 Brassica carinata HOM05D004491 ORTHO05D006742 2.1e-177 625.9 410 74.1
THA.LOC104817536 Tarenaya hassleriana HOM05D004491 ORTHO05D006742 2.1e-177 625.9 414 74.9
unitig_37.g12470 Utricularia gibba HOM05D004491 ORTHO05D006742 2.1e-177 625.9 413 74.1
Aa31LG1G29390 Aethionema arabicum HOM05D004491 ORTHO05D006742 2.8e-177 625.5 410 75.1
Ah.02g115120 Amaranthus hybridus HOM05D004491 ORTHO05D006742 2.8e-177 625.5 417 73.1
Hund18024 Selenicereus undatus HOM05D004491 ORTHO05D006742 4.8e-177 624.8 417 73.4
Duzib211G0578 Durio zibethinus HOM05D004491 ORTHO05D006742 8.1e-177 624.0 413 74.6
Gorai.008G007400 Gossypium raimondii HOM05D004491 ORTHO05D006742 8.1e-177 624.0 413 73.4
BcaC02g10333 Brassica carinata HOM05D004491 ORTHO05D006742 1.1e-176 623.6 410 73.4
AL5G45780 Arabidopsis lyrata HOM05D004491 ORTHO05D006742 1.4e-176 623.2 409 74.3
AT3G63000 Arabidopsis thaliana HOM05D004491 ORTHO05D006742 1.4e-176 623.2 412 73.3
Gohir.A12G007800 Gossypium hirsutum HOM05D004491 ORTHO05D006742 1.4e-176 623.2 413 73.4
C04p30230 Brassica napus HOM05D004491 ORTHO05D006742 1.8e-176 622.9 410 73.4
BolC4t24555H Brassica oleracea HOM05D004491 ORTHO05D006742 1.8e-176 622.9 410 73.4
AT2G47970 Arabidopsis thaliana HOM05D004491 ORTHO05D006742 2.4e-176 622.5 410 74.9
Carub.0005s2965 Capsella rubella HOM05D004491 ORTHO05D006742 4.0e-176 621.7 412 73.1
Gohir.D12G007200 Gossypium hirsutum HOM05D004491 ORTHO05D006742 4.0e-176 621.7 413 73.1
Aa31LG10G16820 Aethionema arabicum HOM05D004491 ORTHO05D006742 5.3e-176 621.3 413 74.6
Thecc.01G288700 Theobroma cacao HOM05D004491 ORTHO05D006742 5.3e-176 621.3 413 74.1
TPR.G32310 Trifolium pratense HOM05D004491 ORTHO05D006742 6.9e-176 620.9 403 78.2
Sp5g00520 Schrenkiella parvula HOM05D004491 ORTHO05D006742 1.5e-175 619.8 413 73.4
Gohir.A08G115800 Gossypium hirsutum HOM05D004491 ORTHO05D006742 2.0e-175 619.4 413 73.8
A04p00390 Brassica napus HOM05D004491 ORTHO05D006742 3.4e-175 618.6 410 72.7
ATR0706G070 Amborella trichopoda HOM05D004491 ORTHO05D006742 4.5e-175 618.2 410 71.7
AL4G47560 Arabidopsis lyrata HOM05D004491 ORTHO05D006742 4.5e-175 618.2 410 74.1
Gorai.004G139800 Gossypium raimondii HOM05D004491 ORTHO05D006742 4.5e-175 618.2 413 73.8
BraA04t15757Z Brassica rapa HOM05D004491 ORTHO05D006742 1.0e-174 617.1 410 72.4
Gohir.D08G136600 Gossypium hirsutum HOM05D004491 ORTHO05D006742 1.0e-174 617.1 413 73.8
CSS0045203 Camellia sinensis var. sinensis HOM05D004491 ORTHO05D006742 2.9e-174 615.5 411 71.5
AUR62043003 Chenopodium quinoa HOM05D004491 ORTHO05D006742 2.9e-174 615.5 417 72.4
CARHR173290 Cardamine hirsuta HOM05D004491 ORTHO05D006742 3.8e-174 615.1 412 72.8
Dinv32984 Davidia involucrata HOM05D004682 ORTHO05D006197 8.4e-174 614.0 376 78.2
PSO170G1317 Papaver somniferum HOM05D004491 ORTHO05D006742 2.5e-173 612.5 414 70.8
TAR365G0641 Trochodendron aralioides HOM05D004491 ORTHO05D006742 5.5e-173 611.3 410 72.0
SEGI_03905 Sequoiadendron giganteum HOM05D004491 ORTHO05D006742 1.2e-172 610.1 413 71.7
PSO407G0423 Papaver somniferum HOM05D004491 ORTHO05D006742 3.5e-172 608.6 414 70.8
Sp4g29890 Schrenkiella parvula HOM05D004491 ORTHO05D006742 4.6e-172 608.2 410 73.2
Lj1C40T6 Lonicera japonica HOM05D004491 ORTHO05D006742 2.3e-171 605.9 508 62.2
CDE01G0135 Ceratophyllum demersum HOM05D004491 ORTHO05D006742 1.2e-167 593.6 412 68.7
EL10Ac5g11643 Beta vulgaris HOM05D004491 ORTHO05D006742 2.0e-167 592.8 466 63.9
MBI19_g09851_MAGBIO Magnolia biondii HOM05D004491 ORTHO05D006742 1.9e-165 586.3 420 71.4
CDE12G0180 Ceratophyllum demersum HOM05D004491 ORTHO05D006742 2.7e-164 582.4 412 67.2
HPP92_001332 Vanilla planifolia HOM05D004491 ORTHO05D006742 8.5e-158 560.8 418 67.9
Mapoly0023s0134 Marchantia polymorpha HOM05D004491 ORTHO05D006742 1.0e-155 553.9 409 66.0
COL.COLO4_08043 Corchorus olitorius HOM05D004491 ORTHO05D006742 1.4e-155 553.5 350 78.3
SHI15482 Sapria himalayana HOM05D004491 ORTHO05D006742 1.4e-155 553.5 429 64.3
AagrBONN_evm.TU.Sc2ySwM_228.2306 Anthoceros agrestis HOM05D004491 ORTHO05D006742 6.7e-147 524.6 409 62.6
CAN.G1209.44 Capsicum annuum HOM05D004491 ORTHO05D006742 9.7e-146 520.8 306 82.0
Sc05g0004670 Simmondsia chinensis HOM05D004491 ORTHO05D006742 2.2e-142 509.6 332 75.9
Duzib133G1404 Durio zibethinus HOM05D004491 ORTHO05D006742 1.9e-141 506.5 329 74.8
Pp3c4_25410 Physcomitrium patens HOM05D004491 ORTHO05D006742 4.2e-141 505.4 410 59.0
CSS0029376 Camellia sinensis var. sinensis HOM05D004491 ORTHO05D006742 1.3e-134 483.8 348 69.3
AUR62034024 Chenopodium quinoa HOM05D004491 ORTHO05D006742 2.5e-133 479.6 334 70.7
Os01g0377700 Oryza sativa ssp. japonica HOM05D004491 ORTHO05D006742 7.2e-133 478.0 419 59.9
SMO011G0024 Selaginella moellendorffii HOM05D004491 ORTHO05D006742 1.2e-132 477.2 409 57.9
Zm00001eb366640 Zea mays HOM05D004491 ORTHO05D006742 2.0e-127 459.9 418 58.1
Zm00001eb146560 Zea mays HOM05D004491 ORTHO05D006742 5.5e-125 451.8 418 56.7
THA.LOC104820469 Tarenaya hassleriana HOM05D004491 ORTHO05D006742 1.8e-112 410.2 234 84.2
PSO384G1012 Papaver somniferum HOM05D004491 ORTHO05D006742 1.1e-104 384.4 243 76.1
PRCOL_00001630 Prasinoderma coloniale HOM05D004491 ORTHO05D006742 1.4e-88 330.9 434 44.9
THA.LOC104799698 Tarenaya hassleriana HOM05D004491 ORTHO05D006742 9.6e-77 291.6 181 77.9
Duzib147G1201 Durio zibethinus HOM05D004491 ORTHO05D006742 1.2e-74 284.6 237 62.9
MCO03G089 Micromonas commoda HOM05D004491 ORTHO05D006742 5.8e-74 282.3 391 42.5
Cre06.g293051 Chlamydomonas reinhardtii HOM05D000780 ORTHO05D001132 2.7e-63 246.9 329 42.9
Aa31sc35G70 Aethionema arabicum HOM05D004491 ORTHO05D006742 1.8e-54 217.6 181 64.1
Actinidia00704 Actinidia chinensis HOM05D004491 ORTHO05D019493 9.3e-48 195.3 256 48.0
GSVIVG01011019001 Vitis vinifera HOM05D004491 ORTHO05D006742 3.6e-47 193.4 113 82.3
BcaB02g07304 Brassica carinata HOM05D004491 ORTHO05D091651 2.7e-39 167.2 219 44.3
Zm00001eb098320 Zea mays HOM05D004491 ORTHO05D006742 1.1e-37 161.8 125 62.4
Sopen08g018880 Solanum pennellii HOM05D004491 ORTHO05D006742 7.2e-32 142.5 80 82.5
AUR62034023 Chenopodium quinoa HOM05D004491 ORTHO05D019493 1.4e-30 138.3 86 75.6
SEGI_06416 Sequoiadendron giganteum HOM05D004491 ORTHO05D019493 7.0e-27 125.9 84 69.0
Actinidia28542 Actinidia chinensis HOM05D004491 ORTHO05D057841 2.9e-25 120.6 183 44.8
Gohir.A11G248600 Gossypium hirsutum HOM05D004491 ORTHO05D019493 1.0e-22 112.1 90 62.2
BcaC08g45254 Brassica carinata HOM05D004491 ORTHO05D032214 2.0e-21 107.8 74 66.2
C08p37710 Brassica napus HOM05D004491 ORTHO05D031847 2.0e-21 107.8 88 62.5
BolC6t38019H Brassica oleracea HOM05D004491 ORTHO05D032214 2.0e-21 107.8 74 66.2
BolC8t51354H Brassica oleracea HOM05D004491 ORTHO05D031847 2.0e-21 107.8 88 62.5
C06p28510 Brassica napus HOM05D004491 ORTHO05D032214 5.7e-21 106.3 74 66.2
Gohir.A04G054626 Gossypium hirsutum HOM05D004491 ORTHO05D019493 3.7e-20 103.6 83 61.4
BcaC07g40782 Brassica carinata HOM05D004491 ORTHO05D031847 8.2e-20 102.4 88 61.4
HPP92_013688 Vanilla planifolia HOM05D004491 ORTHO05D006742 1.6e-18 98.2 81 60.5
SHI00898 Sapria himalayana HOM05D004491 ORTHO05D019493 1.7e-17 94.7 73 60.3
BcaC07g42722 Brassica carinata HOM05D004491 ORTHO05D095981 2.5e-16 90.9 66 62.1
BcaC07g42719 Brassica carinata HOM05D004491 ORTHO05D094938 8.8e-14 82.4 65 56.9
CAN.G1682.2 Capsicum annuum HOM05D011687 ORTHO05D014163 3.7e-12 77.0 86 51.2
SHI19086 Sapria himalayana HOM05D004491 ORTHO05D019493 6.3e-12 76.3 59 59.3
BolC6t38020H Brassica oleracea HOM05D004491 ORTHO05D040597 3.5e-10 70.5 112 40.2
C06p28520 Brassica napus HOM05D004491 ORTHO05D040597 4.5e-10 70.1 112 39.3
A09p54850 Brassica napus HOM05D004491 ORTHO05D102086 8.8e-06 55.8 124 34.7


User provided reference genes

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