Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g23750 Fragaria vesca HOM05D007833 ORTHO05D009855 4.4e-30 134.0 71 100.0
FAN24G2170 Fragaria x ananassa HOM05D007833 ORTHO05D009855 4.4e-30 134.0 71 100.0
FAN20G1309 Fragaria x ananassa HOM05D007833 ORTHO05D009855 1.2e-27 125.9 68 97.1
RcHm_v2.0_Chr6g0291241 Rosa chinensis HOM05D007833 ORTHO05D009855 5.8e-22 107.1 68 86.8
MD11G1287600 Malus domestica HOM05D007833 ORTHO05D009855 3.6e-16 87.8 58 84.5
ClCG07G000180 Citrullus lanatus HOM05D007833 ORTHO05D009855 4.0e-15 84.3 65 67.7
ECA247G0823 Erigeron canadensis HOM05D007833 ORTHO05D009855 5.2e-15 84.0 69 68.1
Prupe.8G242800 Prunus persica HOM05D007833 ORTHO05D009855 6.8e-15 83.6 59 74.6
COL.COLO4_09117 Corchorus olitorius HOM05D003232 ORTHO05D003584 8.9e-15 83.2 62 69.4
Rhsim13G0023900 Rhododendron simsii HOM05D007833 ORTHO05D009855 8.9e-15 83.2 51 80.4
CANSAT25G0416 Cannabis sativa HOM05D007833 ORTHO05D009855 1.5e-14 82.4 65 69.2
Cc01_g19620 Coffea canephora HOM05D007833 ORTHO05D009855 7.5e-14 80.1 63 68.3
Haze_04727 Corylus avellana HOM05D001305 ORTHO05D007147 9.9e-14 79.7 50 82.0
PGSC0003DMG400020049 Solanum tuberosum HOM05D007833 ORTHO05D009855 1.3e-13 79.3 63 63.5
Hma1.2p1_0628F.1_g192040 Hydrangea macrophylla HOM05D007833 ORTHO05D009855 1.7e-13 79.0 60 66.7
Thecc.01G281600 Theobroma cacao HOM05D007833 ORTHO05D009855 1.7e-13 79.0 65 64.6
Nitab4.5_0008797g0010 Nicotiana tabacum HOM05D007833 ORTHO05D009855 2.2e-13 78.6 66 63.6
CAN.G1682.20 Capsicum annuum HOM05D007833 ORTHO05D009855 2.9e-13 78.2 66 65.2
Sed0020364 Sechium edule HOM05D007833 ORTHO05D009855 2.9e-13 78.2 52 73.1
Solyc06g084300.1 Solanum lycopersicum HOM05D007833 ORTHO05D009855 2.9e-13 78.2 48 77.1
Nitab4.5_0000759g0080 Nicotiana tabacum HOM05D007833 ORTHO05D009855 6.4e-13 77.0 66 62.1
Duzib133G1414 Durio zibethinus HOM05D007833 ORTHO05D009855 8.3e-13 76.6 62 62.9
Potri.005G208100 Populus trichocarpa HOM05D007833 ORTHO05D009855 8.3e-13 76.6 57 71.9
QL12p022146 Quercus lobata HOM05D007833 ORTHO05D009855 1.1e-12 76.3 67 62.7
CSS0012022 Camellia sinensis var. sinensis HOM05D007833 ORTHO05D009855 1.4e-12 75.9 71 60.6
CsaV3_6G037060 Cucumis sativus L. HOM05D007833 ORTHO05D009855 1.4e-12 75.9 54 70.4
Atru.chr5.1399 Acer truncatum HOM05D007833 ORTHO05D009855 1.9e-12 75.5 66 65.2
Manes.01G208800 Manihot esculenta HOM05D007833 ORTHO05D009855 1.9e-12 75.5 62 67.7
Peaxi162Scf00783g00321 Petunia axillaris HOM05D007833 ORTHO05D009855 1.9e-12 75.5 61 62.3
Sopen06g035690 Solanum pennellii HOM05D007833 ORTHO05D009855 1.9e-12 75.5 66 60.6
Actinidia00743 Actinidia chinensis HOM05D002055 ORTHO05D002120 2.4e-12 75.1 64 62.5
AUR62036454 Chenopodium quinoa HOM05D007833 ORTHO05D009855 2.4e-12 75.1 64 62.5
Eucgr.K03378 Eucalyptus grandis HOM05D007833 ORTHO05D009855 3.2e-12 74.7 46 80.4
TAR365G0564 Trochodendron aralioides HOM05D007833 ORTHO05D009855 4.1e-12 74.3 49 73.5
Cfa006126 Carpinus fangiana HOM05D007833 ORTHO05D009855 7.1e-12 73.6 67 65.7
MD03G1267100 Malus domestica HOM05D007833 ORTHO05D009855 7.1e-12 73.6 76 63.2
Gohir.A08G068400 Gossypium hirsutum HOM05D007833 ORTHO05D009855 9.2e-12 73.2 55 67.3
Gorai.004G081500 Gossypium raimondii HOM05D007833 ORTHO05D009855 1.2e-11 72.8 62 64.5
vmacro02562 Vaccinium macrocarpon HOM05D007833 ORTHO05D009855 1.2e-11 72.8 51 68.6
EL10Ac7g17570 Beta vulgaris HOM05D007833 ORTHO05D009855 1.6e-11 72.4 59 64.4
Duzib138G0003 Durio zibethinus HOM05D007833 ORTHO05D009855 2.1e-11 72.0 57 64.9
Gohir.D08G076800 Gossypium hirsutum HOM05D007833 ORTHO05D009855 2.1e-11 72.0 62 64.5
Carub.0005s1877 Capsella rubella HOM05D007833 ORTHO05D009855 2.7e-11 71.6 66 60.6
CiPaw.07G092800 Carya illinoinensis HOM05D007833 ORTHO05D009855 2.7e-11 71.6 55 69.1
Sc24g0003060 Simmondsia chinensis HOM05D007833 ORTHO05D009855 2.7e-11 71.6 66 60.6
Nitab4.5_0001028g0100 Nicotiana tabacum HOM05D007833 ORTHO05D009855 3.5e-11 71.2 64 57.8
BcaC06g32911 Brassica carinata HOM05D007833 ORTHO05D009855 4.6e-11 70.9 48 72.9
BcaC06g33387 Brassica carinata HOM05D007833 ORTHO05D009855 4.6e-11 70.9 48 72.9
C07p46950 Brassica napus HOM05D000938 ORTHO05D001451 4.6e-11 70.9 48 72.9
BolC7t45211H Brassica oleracea HOM05D000938 ORTHO05D001451 4.6e-11 70.9 48 72.9
AUR62017101 Chenopodium quinoa HOM05D007833 ORTHO05D009855 4.6e-11 70.9 48 68.8
Ciclev10023167m.g Citrus clementina HOM05D007833 ORTHO05D009855 4.6e-11 70.9 46 76.1
TWI59G0429 Tripterygium wilfordii HOM05D007833 ORTHO05D009855 6.0e-11 70.5 69 60.9
Oeu028084.1 Olea europaea HOM05D007833 ORTHO05D009855 1.0e-10 69.7 48 66.7
PGSC0003DMG400001195 Solanum tuberosum HOM05D007833 ORTHO05D009855 1.0e-10 69.7 64 59.4
AT3G52420 Arabidopsis thaliana HOM05D007833 ORTHO05D009855 1.3e-10 69.3 59 61.0
AL5G33070 Arabidopsis lyrata HOM05D007833 ORTHO05D009855 1.7e-10 68.9 59 61.0
A03p48860 Brassica napus HOM05D000938 ORTHO05D001451 1.7e-10 68.9 48 70.8
BraA03t13987Z Brassica rapa HOM05D000938 ORTHO05D001451 1.7e-10 68.9 48 70.8
Potri.002G054700 Populus trichocarpa HOM05D007833 ORTHO05D009855 1.7e-10 68.9 63 66.7
Lsat_1_v5_gn_9_4081 Lactuca sativa HOM05D007833 ORTHO05D009855 2.3e-10 68.6 66 57.6
Sp5g09880 Schrenkiella parvula HOM05D007833 ORTHO05D009855 2.3e-10 68.6 57 64.9
Dinv11245 Davidia involucrata HOM05D003232 ORTHO05D003584 3.0e-10 68.2 59 59.3
MBI04_g33966_MAGBIO Magnolia biondii HOM05D007833 ORTHO05D009855 3.9e-10 67.8 48 66.7
CARHR162190 Cardamine hirsuta HOM05D007833 ORTHO05D009855 6.6e-10 67.0 57 61.4
Nitab4.5_0014943g0010 Nicotiana tabacum HOM05D007833 ORTHO05D009855 8.6e-10 66.6 64 56.2
Ah.04g166580 Amaranthus hybridus HOM05D007833 ORTHO05D009855 1.9e-09 65.5 57 59.6
Glyma.19G154700 Glycine max HOM05D007833 ORTHO05D009855 1.9e-09 65.5 44 75.0
Nn1g02183 Nelumbo nucifera HOM05D007833 ORTHO05D009855 5.6e-09 63.9 67 55.2
Migut.N02161 Erythranthe guttata HOM05D007833 ORTHO05D009855 9.5e-09 63.2 64 59.4
Phvul.001G149800 Phaseolus vulgaris HOM05D007833 ORTHO05D009855 9.5e-09 63.2 60 58.3
PGR044G2487 Punica granatum HOM05D007833 ORTHO05D009855 9.5e-09 63.2 37 81.1
arahy.Tifrunner.gnm1.ann1.1H9ESI Arachis hypogaea HOM05D007833 ORTHO05D009855 1.2e-08 62.8 44 72.7
Cpa.g.sc52.17 Carica papaya HOM05D007833 ORTHO05D009855 1.2e-08 62.8 48 64.6
Psat3g064960 Pisum sativum HOM05D007833 ORTHO05D009855 1.6e-08 62.4 49 65.3
SalBow6G6192 Salvia bowleyana HOM05D007833 ORTHO05D009855 1.6e-08 62.4 62 58.1
Glyma.17G209300 Glycine max HOM05D007833 ORTHO05D009855 2.1e-08 62.0 44 70.5
Nn4g26217 Nelumbo nucifera HOM05D007833 ORTHO05D009855 2.1e-08 62.0 48 64.6
Ca_08575_v3 Cicer arietinum L. HOM05D007833 ORTHO05D009855 3.6e-08 61.2 48 62.5
Medtr7g094710 Medicago truncatula HOM05D007833 ORTHO05D009855 3.6e-08 61.2 58 60.3
HPP92_007464 Vanilla planifolia HOM05D027844 ORTHO05D009855 4.7e-08 60.8 49 57.1
Thhalv10010886m.g Eutrema salsugineum HOM05D007833 ORTHO05D009855 6.2e-08 60.5 43 69.8
Aqoxy6G00608 Aquilegia oxysepala HOM05D007833 ORTHO05D009855 8.1e-08 60.1 66 53.0
Lj1g0020293 Lotus japonicus HOM05D007833 ORTHO05D009855 8.1e-08 60.1 43 67.4
Migut.K01062 Erythranthe guttata HOM05D007833 ORTHO05D009855 1.4e-07 59.3 42 71.4
Glyma.03G152200 Glycine max HOM05D007833 ORTHO05D009855 1.4e-07 59.3 63 60.3
Potri.017G127350 Populus trichocarpa HOM05D007833 ORTHO05D009855 2.4e-07 58.5 58 58.6
TPR.G26603 Trifolium pratense HOM05D007833 ORTHO05D009855 2.4e-07 58.5 44 65.9
Peaxi162Scf00570g00076 Petunia axillaris HOM05D007833 ORTHO05D009855 8.9e-07 56.6 42 61.9
THA.LOC109116323 Tarenaya hassleriana HOM05D007833 ORTHO05D009855 5.8e-06 53.9 51 58.8
AUR62036455 Chenopodium quinoa HOM05D045935 ORTHO05D009855 9.9e-06 53.1 38 60.5
unitig_0.g1010 Utricularia gibba HOM05D007833 ORTHO05D009855 9.9e-06 53.1 49 57.1


User provided reference genes

Program Settings