Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g23370 Fragaria vesca HOM05D002943 ORTHO05D002685 4.0e-56 222.2 233 100.0
RcHm_v2.0_Chr6g0290821 Rosa chinensis HOM05D002943 ORTHO05D002685 2.7e-36 156.4 223 90.6
Prupe.8G239500 Prunus persica HOM05D002943 ORTHO05D002685 2.0e-31 140.2 224 87.1
MD03G1263200 Malus domestica HOM05D002943 ORTHO05D002685 3.8e-30 136.0 224 85.3
ClCG09G007120 Citrullus lanatus HOM05D002943 ORTHO05D002685 8.8e-27 124.8 222 82.9
CANSAT56G2303 Cannabis sativa HOM05D002943 ORTHO05D002685 3.3e-26 122.9 220 80.5
CsaV3_7G028040 Cucumis sativus L. HOM05D002943 ORTHO05D002685 7.4e-26 121.7 224 82.6
Sed0026548 Sechium edule HOM05D002943 ORTHO05D002685 7.4e-26 121.7 221 80.1
MELO3C015824.2 Cucumis melo HOM05D002943 ORTHO05D002685 1.3e-25 120.9 223 81.6
Cpa.g.sc52.53 Carica papaya HOM05D002943 ORTHO05D002685 1.1e-24 117.9 224 81.2
Gohir.A08G045160 Gossypium hirsutum HOM05D002943 ORTHO05D002685 1.1e-24 117.9 225 82.2
Gohir.D08G055200 Gossypium hirsutum HOM05D002943 ORTHO05D002685 1.1e-24 117.9 225 82.2
Gorai.004G055700 Gossypium raimondii HOM05D002943 ORTHO05D002685 1.1e-24 117.9 225 82.2
Thecc.01G277000 Theobroma cacao HOM05D002943 ORTHO05D002685 3.1e-24 116.3 225 80.4
AL6G50270 Arabidopsis lyrata HOM05D002943 ORTHO05D002685 6.9e-24 115.2 222 74.3
COL.COLO4_09075 Corchorus olitorius HOM05D002943 ORTHO05D002685 9.1e-24 114.8 225 80.4
Atru.chr5.1459 Acer truncatum HOM05D002943 ORTHO05D002685 2.6e-23 113.2 219 82.2
Carub.0006s3437 Capsella rubella HOM05D002943 ORTHO05D002685 4.5e-23 112.5 222 73.9
CARHR251070 Cardamine hirsuta HOM05D002943 ORTHO05D002685 4.5e-23 112.5 222 79.3
AT4G02730 Arabidopsis thaliana HOM05D002943 ORTHO05D002685 5.9e-23 112.1 215 76.3
BcaB05g23663 Brassica carinata HOM05D002943 ORTHO05D002685 5.9e-23 112.1 221 73.3
Duzib138G1878 Durio zibethinus HOM05D002943 ORTHO05D002685 7.7e-23 111.7 224 80.8
Aa31LG5G2370 Aethionema arabicum HOM05D000358 ORTHO05D009346 1.0e-22 111.3 219 66.2
Lalb_Chr21g0306431 Lupinus albus HOM05D002943 ORTHO05D002685 1.0e-22 111.3 224 80.4
Sp6g02690 Schrenkiella parvula HOM05D002943 ORTHO05D002685 1.3e-22 110.9 221 70.6
Eucgr.K03366 Eucalyptus grandis HOM05D002943 ORTHO05D002685 8.5e-22 108.2 225 78.7
PGR044G0058 Punica granatum HOM05D002943 ORTHO05D002685 8.5e-22 108.2 228 78.5
HPP92_017535 Vanilla planifolia HOM05D002943 ORTHO05D002685 8.5e-22 108.2 223 77.1
THA.LOC104815938 Tarenaya hassleriana HOM05D002943 ORTHO05D002685 1.1e-21 107.8 213 80.3
Thhalv10028762m.g Eutrema salsugineum HOM05D002943 ORTHO05D002685 1.9e-21 107.1 219 67.6
Cfa006157 Carpinus fangiana HOM05D002943 ORTHO05D002685 7.2e-21 105.1 216 78.7
Haze_04694 Corylus avellana HOM05D002943 ORTHO05D002685 3.6e-20 102.8 216 77.3
VMungo0720G0375 Vigna mungo HOM05D002943 ORTHO05D002685 8.0e-20 101.7 222 59.0
QL12p021366 Quercus lobata HOM05D002943 ORTHO05D002685 2.3e-19 100.1 227 77.1
Potri.002G051900 Populus trichocarpa HOM05D002943 ORTHO05D002685 3.9e-19 99.4 63 77.8
Hma1.2p1_0667F.1_g199660 Hydrangea macrophylla HOM05D002943 ORTHO05D002685 4.8e-17 92.4 225 77.3
arahy.Tifrunner.gnm1.ann1.FR17PC Arachis hypogaea HOM05D002943 ORTHO05D002685 6.3e-17 92.0 61 75.4
Nitab4.5_0005971g0020 Nicotiana tabacum HOM05D002943 ORTHO05D002685 8.2e-17 91.7 220 70.5
arahy.Tifrunner.gnm1.ann1.NISQ8K Arachis hypogaea HOM05D002943 ORTHO05D002685 1.4e-16 90.9 61 73.8
Glyma.02G146800 Glycine max HOM05D002943 ORTHO05D002685 1.8e-16 90.5 62 69.4
Lj5g0020766 Lotus japonicus HOM05D002943 ORTHO05D002685 1.8e-16 90.5 53 77.4
Phvul.007G172600 Phaseolus vulgaris HOM05D002943 ORTHO05D002685 2.4e-16 90.1 59 74.6
vmacro02582 Vaccinium macrocarpon HOM05D002943 ORTHO05D002685 4.1e-16 89.4 63 69.8
Ciclev10021263m.g Citrus clementina HOM05D002943 ORTHO05D002685 7.0e-16 88.6 55 74.5
Rhsim13G0026000 Rhododendron simsii HOM05D002943 ORTHO05D002685 1.2e-15 87.8 61 70.5
Medtr1g072140 Medicago truncatula HOM05D002943 ORTHO05D002685 1.6e-15 87.4 61 70.5
Glyma.10G027100 Glycine max HOM05D002943 ORTHO05D002685 2.0e-15 87.0 60 71.7
Peaxi162Scf00641g00318 Petunia axillaris HOM05D002943 ORTHO05D002685 2.0e-15 87.0 220 76.4
CiPaw.07G090800 Carya illinoinensis HOM05D002943 ORTHO05D002685 3.5e-15 86.3 52 78.8
Sc17g0001450 Simmondsia chinensis HOM05D002943 ORTHO05D002685 5.9e-15 85.5 63 68.3
CSS0015908 Camellia sinensis var. sinensis HOM05D002943 ORTHO05D002685 1.0e-14 84.7 62 66.1
Manes.01G207000 Manihot esculenta HOM05D002943 ORTHO05D002685 1.0e-14 84.7 57 70.2
Nitab4.5_0004318g0010 Nicotiana tabacum HOM05D002943 ORTHO05D002685 1.0e-14 84.7 218 77.5
Dinv34766 Davidia involucrata HOM05D002943 ORTHO05D002685 2.9e-14 83.2 61 63.9
Lj2A1170T16 Lonicera japonica HOM05D002943 ORTHO05D002685 2.9e-14 83.2 63 65.1
EL10Ac5g10558 Beta vulgaris HOM05D002943 ORTHO05D002685 3.8e-14 82.8 108 70.4
MBI04_g36449_MAGBIO Magnolia biondii HOM05D002943 ORTHO05D002685 3.8e-14 82.8 63 61.9
TAR365G0759 Trochodendron aralioides HOM05D002943 ORTHO05D002685 3.8e-14 82.8 64 67.2
Actinidia09125 Actinidia chinensis HOM05D002943 ORTHO05D002685 5.0e-14 82.4 58 65.5
Ah.11g050560 Amaranthus hybridus HOM05D002943 ORTHO05D002685 5.0e-14 82.4 108 65.7
BcaC03g16173 Brassica carinata HOM05D002943 ORTHO05D002685 5.0e-14 82.4 107 72.0
C02p39070 Brassica napus HOM05D002943 ORTHO05D002685 5.0e-14 82.4 107 72.0
BolC2t09917H Brassica oleracea HOM05D002943 ORTHO05D002685 5.0e-14 82.4 107 72.0
C03p06110 Brassica napus HOM05D002943 ORTHO05D002685 8.5e-14 81.6 106 70.8
CDE05G3340 Ceratophyllum demersum HOM05D002943 ORTHO05D002685 1.5e-13 80.9 65 60.0
A02p24970 Brassica napus HOM05D002943 ORTHO05D002685 1.9e-13 80.5 107 71.0
BraA02t07487Z Brassica rapa HOM05D002943 ORTHO05D002685 1.9e-13 80.5 107 71.0
TWI59G0374 Tripterygium wilfordii HOM05D002943 ORTHO05D002685 2.5e-13 80.1 59 66.1
Nn4g26296 Nelumbo nucifera HOM05D002943 ORTHO05D002685 3.2e-13 79.7 65 63.1
PGSC0003DMG400019361 Solanum tuberosum HOM05D002943 ORTHO05D002685 4.2e-13 79.3 64 62.5
HanXRQChr10g0282271 Helianthus annuus HOM05D002943 ORTHO05D002685 7.2e-13 78.6 58 67.2
Solyc09g065290.4 Solanum lycopersicum HOM05D002943 ORTHO05D002685 1.6e-12 77.4 64 60.9
Sopen09g027040 Solanum pennellii HOM05D002943 ORTHO05D002685 1.6e-12 77.4 64 60.9
Lsat_1_v5_gn_9_3501 Lactuca sativa HOM05D002943 ORTHO05D002685 2.1e-12 77.0 62 59.7
Psat6g060720 Pisum sativum HOM05D002943 ORTHO05D002685 1.0e-11 74.7 47 76.6
ECA247G3845 Erigeron canadensis HOM05D002943 ORTHO05D002685 1.4e-11 74.3 49 71.4
Ca_09752_v3 Cicer arietinum L. HOM05D002943 ORTHO05D002685 3.0e-11 73.2 47 74.5
PSO761G0421 Papaver somniferum HOM05D002943 ORTHO05D002685 5.2e-11 72.4 67 58.2
PSO210G2619 Papaver somniferum HOM05D002943 ORTHO05D002685 6.7e-11 72.0 67 58.2
Hund02771 Selenicereus undatus HOM05D002943 ORTHO05D002685 1.5e-10 70.9 49 71.4
SHI25865 Sapria himalayana HOM05D000002 ORTHO05D000001 3.3e-10 69.7 55 58.2
SGA_v2.0_scaffold1G00490 Striga asiatica HOM05D002943 ORTHO05D002685 2.2e-09 67.0 61 55.7
SGA_v2.0_scaffold138G35332 Striga asiatica HOM05D002943 ORTHO05D002685 2.8e-09 66.6 62 53.2
MSTRG.18239 Avicennia marina HOM05D002943 ORTHO05D002685 2.4e-08 63.5 61 52.5
Migut.D00309 Erythranthe guttata HOM05D002943 ORTHO05D002685 3.1e-08 63.2 56 55.4
SalBow4G2517 Salvia bowleyana HOM05D002943 ORTHO05D002685 1.6e-07 60.8 54 55.6
Eucgr.H02400 Eucalyptus grandis HOM05D002943 ORTHO05D002685 3.5e-07 59.7 50 58.0
SMO119G0268 Selaginella moellendorffii HOM05D002943 ORTHO05D002685 3.5e-07 59.7 52 57.7
A06p18050 Brassica napus HOM05D009278 ORTHO05D002685 7.7e-07 58.5 47 59.6
Hund07388 Selenicereus undatus HOM05D002943 ORTHO05D002685 7.7e-07 58.5 54 53.7
Cc03_g10690 Coffea canephora HOM05D002943 ORTHO05D002685 1.0e-06 58.2 39 71.8
SEGI_07764 Sequoiadendron giganteum HOM05D002943 ORTHO05D002685 1.0e-06 58.2 45 60.0
ATR0332G039 Amborella trichopoda HOM05D002943 ORTHO05D002685 1.3e-06 57.8 43 62.8
CSS0049699 Camellia sinensis var. sinensis HOM05D002943 ORTHO05D002685 1.3e-06 57.8 47 55.3
Hma1.2p1_0996F.1_g245920 Hydrangea macrophylla HOM05D002943 ORTHO05D002685 1.3e-06 57.8 57 50.9
Zm00001eb325000 Zea mays HOM05D002943 ORTHO05D002685 1.7e-06 57.4 51 54.9
arahy.Tifrunner.gnm1.ann1.HA7VEA Arachis hypogaea HOM05D001631 ORTHO05D003183 2.2e-06 57.0 39 69.2
Lj2C426T11 Lonicera japonica HOM05D002943 ORTHO05D002685 2.2e-06 57.0 59 47.5
CSS0032407 Camellia sinensis var. sinensis HOM05D002943 ORTHO05D002685 2.9e-06 56.6 41 65.9
FvH4_1g18760 Fragaria vesca HOM05D002943 ORTHO05D002685 3.8e-06 56.2 45 57.8
FAN19G1191 Fragaria x ananassa HOM05D002943 ORTHO05D002685 3.8e-06 56.2 45 57.8
Os07g0572000 Oryza sativa ssp. japonica HOM05D002943 ORTHO05D002685 3.8e-06 56.2 51 54.9
Zm00001eb325010 Zea mays HOM05D002943 ORTHO05D002685 3.8e-06 56.2 51 52.9
Actinidia11939 Actinidia chinensis HOM05D002943 ORTHO05D002685 5.0e-06 55.8 56 51.8
Ciclev10026097m.g Citrus clementina HOM05D002943 ORTHO05D002685 5.0e-06 55.8 54 50.0
FAN23G1457 Fragaria x ananassa HOM05D002943 ORTHO05D002685 5.0e-06 55.8 44 59.1
FAN28G1172 Fragaria x ananassa HOM05D002943 ORTHO05D002685 5.0e-06 55.8 44 59.1
Cc07_g07680 Coffea canephora HOM05D002943 ORTHO05D002685 6.5e-06 55.5 60 46.7
Rhsim10G0085400 Rhododendron simsii HOM05D002943 ORTHO05D002685 6.5e-06 55.5 57 50.9
ATR0332G110 Amborella trichopoda HOM05D002943 ORTHO05D002685 8.5e-06 55.1 48 52.1
vmacro05467 Vaccinium macrocarpon HOM05D002943 ORTHO05D002685 8.5e-06 55.1 59 49.2
HPP92_020621 Vanilla planifolia HOM05D002943 ORTHO05D002685 8.5e-06 55.1 55 52.7


User provided reference genes

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