Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g21300 Fragaria vesca HOM05D004257 ORTHO05D005202 1.1e-190 669.8 346 100.0
FAN24G1061 Fragaria x ananassa HOM05D004257 ORTHO05D005202 6.0e-189 664.1 346 99.7
FAN20G1479 Fragaria x ananassa HOM05D004257 ORTHO05D005202 2.1e-186 655.6 347 98.6
FAN27G2888 Fragaria x ananassa HOM05D004257 ORTHO05D005202 6.8e-185 650.6 347 98.0
FAN15G2746 Fragaria x ananassa HOM05D004257 ORTHO05D005202 5.6e-179 630.9 349 95.1
RcHm_v2.0_Chr6g0287891 Rosa chinensis HOM05D004257 ORTHO05D005202 1.5e-176 622.9 354 93.2
Prupe.8G222200 Prunus persica HOM05D004257 ORTHO05D005202 6.6e-164 580.9 359 85.8
MD05G1195500 Malus domestica HOM05D004257 ORTHO05D005202 1.8e-161 572.8 363 83.7
Sabra02G0030200 Salix brachista HOM05D004257 ORTHO05D005202 2.4e-161 572.4 346 83.5
Potri.002G037400 Populus trichocarpa HOM05D004257 ORTHO05D005202 4.0e-161 571.6 346 83.2
ClCG07G001120 Citrullus lanatus HOM05D004257 ORTHO05D005202 2.6e-160 568.9 355 82.5
QL09p039362 Quercus lobata HOM05D004257 ORTHO05D005202 2.6e-160 568.9 345 84.6
MD10G1182800 Malus domestica HOM05D004257 ORTHO05D005202 4.5e-160 568.2 365 82.7
Manes.12G033300 Manihot esculenta HOM05D004257 ORTHO05D005202 3.8e-159 565.1 346 84.4
Duzib133G1463 Durio zibethinus HOM05D004257 ORTHO05D005202 4.9e-159 564.7 348 83.9
Potri.005G225700 Populus trichocarpa HOM05D004257 ORTHO05D005202 6.4e-159 564.3 346 82.4
CsaV3_3G022160 Cucumis sativus L. HOM05D004257 ORTHO05D005202 1.1e-158 563.5 349 83.7
Thecc.01G256600 Theobroma cacao HOM05D004257 ORTHO05D005202 2.4e-158 562.4 347 83.0
Duzib138G0002 Durio zibethinus HOM05D004257 ORTHO05D005202 7.1e-158 560.8 347 83.3
CANSAT01G0143 Cannabis sativa HOM05D004257 ORTHO05D005202 1.2e-157 560.1 346 83.2
Gohir.D07G155600 Gossypium hirsutum HOM05D004257 ORTHO05D005202 1.6e-157 559.7 347 83.0
COL.COLO4_04031 Corchorus olitorius HOM05D004257 ORTHO05D005202 2.7e-157 558.9 347 83.0
MELO3C012874.2 Cucumis melo HOM05D004257 ORTHO05D005202 2.7e-157 558.9 353 81.9
Gohir.A07G149400 Gossypium hirsutum HOM05D004257 ORTHO05D005202 2.7e-157 558.9 349 82.2
Gorai.001G178500 Gossypium raimondii HOM05D004257 ORTHO05D005202 3.5e-157 558.5 347 82.7
CSS0006901 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 6.0e-157 557.8 346 82.7
CSS0016221 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 6.0e-157 557.8 346 82.7
Dinv06012 Davidia involucrata HOM05D004257 ORTHO05D005202 1.8e-156 556.2 346 82.1
Cfa002439 Carpinus fangiana HOM05D004257 ORTHO05D005202 3.0e-156 555.4 347 83.0
CiPaw.03G265600 Carya illinoinensis HOM05D004257 ORTHO05D005202 5.1e-156 554.7 346 82.1
Sed0007154 Sechium edule HOM05D004257 ORTHO05D005202 6.7e-156 554.3 348 81.0
PGSC0003DMG402031052 Solanum tuberosum HOM05D004257 ORTHO05D005202 8.7e-156 553.9 346 80.9
Ciclev10021043m.g Citrus clementina HOM05D004257 ORTHO05D005202 1.1e-155 553.5 346 80.6
Gorai.007G147100 Gossypium raimondii HOM05D004257 ORTHO05D005202 1.5e-155 553.1 350 82.0
TWI18G0956 Tripterygium wilfordii HOM05D004257 ORTHO05D005202 2.5e-155 552.4 346 80.6
Gohir.A11G131450 Gossypium hirsutum HOM05D004257 ORTHO05D005202 4.3e-155 551.6 349 82.2
Gohir.D11G137300 Gossypium hirsutum HOM05D004257 ORTHO05D005202 4.3e-155 551.6 350 81.7
CANSAT35G1745 Cannabis sativa HOM05D004257 ORTHO05D005202 5.6e-155 551.2 353 82.2
Nitab4.5_0004454g0010 Nicotiana tabacum HOM05D004257 ORTHO05D005202 9.6e-155 550.4 347 81.3
CiPaw.04G187400 Carya illinoinensis HOM05D004257 ORTHO05D005202 1.3e-154 550.1 346 81.2
Nn3g19680 Nelumbo nucifera HOM05D004257 ORTHO05D005202 1.6e-154 549.7 346 81.2
CAN.G637.23 Capsicum annuum HOM05D004257 ORTHO05D005202 2.1e-154 549.3 346 80.6
Aqoxy2G03662 Aquilegia oxysepala HOM05D004257 ORTHO05D005202 2.8e-154 548.9 346 80.1
Medtr7g097060 Medicago truncatula HOM05D004257 ORTHO05D005202 2.8e-154 548.9 346 81.5
Atru.chr5.1712 Acer truncatum HOM05D004257 ORTHO05D005202 3.7e-154 548.5 346 80.9
TAR365G0817 Trochodendron aralioides HOM05D004257 ORTHO05D005202 3.7e-154 548.5 346 81.2
vmacro10363 Vaccinium macrocarpon HOM05D004257 ORTHO05D005202 4.8e-154 548.1 353 81.0
Hma1.2p1_0075F.1_g039210 Hydrangea macrophylla HOM05D004257 ORTHO05D005202 8.1e-154 547.4 346 81.2
Actinidia38939 Actinidia chinensis HOM05D004257 ORTHO05D005202 1.1e-153 547.0 346 81.2
Sed0014699 Sechium edule HOM05D004257 ORTHO05D005202 1.1e-153 547.0 353 79.9
Psat3g056800 Pisum sativum HOM05D004257 ORTHO05D005202 2.4e-153 545.8 346 81.2
Ca_08681_v3 Cicer arietinum L. HOM05D004257 ORTHO05D005202 3.1e-153 545.4 346 81.2
Peaxi162Scf00171g00722 Petunia axillaris HOM05D004257 ORTHO05D005202 4.0e-153 545.0 346 80.6
Migut.O00233 Erythranthe guttata HOM05D004257 ORTHO05D005202 9.0e-153 543.9 327 83.5
PSO832G0932 Papaver somniferum HOM05D004257 ORTHO05D005202 9.0e-153 543.9 348 80.2
MBI07_g16916_MAGBIO Magnolia biondii HOM05D004257 ORTHO05D005202 2.6e-152 542.3 364 78.3
Eucgr.K03257 Eucalyptus grandis HOM05D004257 ORTHO05D005202 3.4e-152 542.0 351 80.6
PSO210G0560 Papaver somniferum HOM05D004257 ORTHO05D005202 3.4e-152 542.0 348 79.9
Solyc03g098140.3 Solanum lycopersicum HOM05D004257 ORTHO05D005202 3.4e-152 542.0 346 79.8
Haze_24645 Corylus avellana HOM05D004257 ORTHO05D005202 4.5e-152 541.6 375 77.1
TWI12G0832 Tripterygium wilfordii HOM05D004257 ORTHO05D005202 4.5e-152 541.6 346 79.2
Sopen03g028840 Solanum pennellii HOM05D004257 ORTHO05D005202 7.6e-152 540.8 346 79.8
THA.LOC104825258 Tarenaya hassleriana HOM05D004257 ORTHO05D005202 9.9e-152 540.4 346 80.3
DCAR_010071 Daucus carota HOM05D004257 ORTHO05D005202 1.3e-151 540.0 346 78.9
SGA_v2.0_scaffold90G27780 Striga asiatica HOM05D004257 ORTHO05D005202 6.4e-151 537.7 346 79.5
TAR362G0002 Trochodendron aralioides HOM05D004257 ORTHO05D005202 1.4e-150 536.6 346 80.3
MSTRG.23192 Avicennia marina HOM05D004257 ORTHO05D005202 3.2e-150 535.4 327 82.0
Cpa.g.sc473.3 Carica papaya HOM05D004257 ORTHO05D005202 5.5e-150 534.6 339 81.1
PGR044G0150 Punica granatum HOM05D004257 ORTHO05D005202 9.3e-150 533.9 349 79.7
BcaB02g07726 Brassica carinata HOM05D004257 ORTHO05D005202 1.6e-149 533.1 349 78.5
AUR62040921 Chenopodium quinoa HOM05D004257 ORTHO05D005202 2.1e-149 532.7 345 78.3
Lj5A229T68 Lonicera japonica HOM05D004257 ORTHO05D005202 2.1e-149 532.7 346 79.8
Hund06906 Selenicereus undatus HOM05D004257 ORTHO05D005202 2.1e-149 532.7 346 78.9
BcaC02g09050 Brassica carinata HOM05D004257 ORTHO05D005202 2.7e-149 532.3 346 78.3
C04p37820 Brassica napus HOM05D004257 ORTHO05D005202 2.7e-149 532.3 346 78.3
BolC4t25358H Brassica oleracea HOM05D004257 ORTHO05D005202 2.7e-149 532.3 346 78.3
PSO675G8702 Papaver somniferum HOM05D004257 ORTHO05D005202 2.7e-149 532.3 348 77.9
PSO675G6112 Papaver somniferum HOM05D004257 ORTHO05D005202 3.5e-149 531.9 348 77.9
Aqoxy5G00217 Aquilegia oxysepala HOM05D004257 ORTHO05D005202 7.9e-149 530.8 331 81.9
AUR62004833 Chenopodium quinoa HOM05D004257 ORTHO05D005202 7.9e-149 530.8 345 78.3
PSO675G8755 Papaver somniferum HOM05D004257 ORTHO05D005202 7.9e-149 530.8 348 77.6
BcaC08g44693 Brassica carinata HOM05D004257 ORTHO05D005202 1.0e-148 530.4 349 78.5
C06p22290 Brassica napus HOM05D004257 ORTHO05D005202 1.0e-148 530.4 349 78.5
Glyma.19G165400 Glycine max HOM05D004257 ORTHO05D005202 1.0e-148 530.4 346 78.0
Sc09g0004250 Simmondsia chinensis HOM05D004257 ORTHO05D005202 1.0e-148 530.4 347 79.0
Cc04_g09710 Coffea canephora HOM05D004257 ORTHO05D005202 3.0e-148 528.9 349 77.7
AT3G54690 Arabidopsis thaliana HOM05D004257 ORTHO05D005202 5.1e-148 528.1 351 77.8
A04p05160 Brassica napus HOM05D004257 ORTHO05D005202 5.1e-148 528.1 346 78.3
BraA04t16226Z Brassica rapa HOM05D004257 ORTHO05D005202 5.1e-148 528.1 346 78.3
Phvul.001G161500 Phaseolus vulgaris HOM05D004257 ORTHO05D005202 5.1e-148 528.1 346 78.3
BolC6t37415H Brassica oleracea HOM05D004257 ORTHO05D005202 6.7e-148 527.7 349 78.2
VMungo1383G3387 Vigna mungo HOM05D004257 ORTHO05D005202 1.1e-147 526.9 347 78.1
AL5G35770 Arabidopsis lyrata HOM05D004257 ORTHO05D005202 1.5e-147 526.6 352 77.6
Ah.04g163130 Amaranthus hybridus HOM05D004257 ORTHO05D005202 1.9e-147 526.2 346 76.6
arahy.Tifrunner.gnm1.ann1.63G7RJ Arachis hypogaea HOM05D004257 ORTHO05D005202 4.3e-147 525.0 346 77.5
CARHR164610 Cardamine hirsuta HOM05D004257 ORTHO05D005202 4.3e-147 525.0 355 76.9
Lj1g0005279 Lotus japonicus HOM05D004257 ORTHO05D005202 4.3e-147 525.0 346 77.7
Aa31sc35G30 Aethionema arabicum HOM05D004257 ORTHO05D005202 7.4e-147 524.2 346 76.9
Carub.0005s2129 Capsella rubella HOM05D004257 ORTHO05D005202 7.4e-147 524.2 356 76.1
MSTRG.11529 Avicennia marina HOM05D004257 ORTHO05D005202 9.6e-147 523.9 320 80.9
DCAR_014267 Daucus carota HOM05D004257 ORTHO05D005202 1.6e-146 523.1 346 77.5
Thhalv10010498m.g Eutrema salsugineum HOM05D004257 ORTHO05D005202 1.6e-146 523.1 354 76.3
Lalb_Chr01g0019631 Lupinus albus HOM05D004257 ORTHO05D005202 8.2e-146 520.8 347 77.2
Nitab4.5_0000936g0060 Nicotiana tabacum HOM05D004257 ORTHO05D005202 8.2e-146 520.8 332 79.8
Sp5g07760 Schrenkiella parvula HOM05D004257 ORTHO05D005202 2.0e-144 516.2 355 75.8
CSS0001153 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 5.8e-144 514.6 347 78.1
Lsat_1_v5_gn_3_39581 Lactuca sativa HOM05D004257 ORTHO05D005202 5.8e-144 514.6 346 77.5
arahy.Tifrunner.gnm1.ann1.BG7UA0 Arachis hypogaea HOM05D004257 ORTHO05D005202 7.6e-144 514.2 367 73.3
TPR.G7131 Trifolium pratense HOM05D004257 ORTHO05D005202 1.0e-143 513.8 389 72.0
HanXRQChr17g0542071 Helianthus annuus HOM05D004257 ORTHO05D005202 9.3e-142 507.3 349 77.1
CSS0049630 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 1.5e-139 500.0 346 76.9
BraA07t29902Z Brassica rapa HOM05D004257 ORTHO05D005202 5.9e-136 488.0 351 74.1
HPP92_017366 Vanilla planifolia HOM05D004257 ORTHO05D005202 4.2e-134 481.9 348 73.0
ATR0736G010 Amborella trichopoda HOM05D004257 ORTHO05D005202 1.2e-133 480.3 346 71.1
BcaC05g28242 Brassica carinata HOM05D004257 ORTHO05D005202 1.2e-133 480.3 351 72.9
BolC5t33007H Brassica oleracea HOM05D004257 ORTHO05D005202 1.2e-133 480.3 351 72.9
HPP92_010358 Vanilla planifolia HOM05D004257 ORTHO05D005202 1.2e-133 480.3 347 71.2
Oeu023635.1 Olea europaea HOM05D004257 ORTHO05D005202 1.4e-129 466.8 345 71.3
CSS0045427 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 5.3e-129 464.9 347 73.5
CDE04G1210 Ceratophyllum demersum HOM05D004257 ORTHO05D005202 6.9e-129 464.5 304 76.3
GSVIVG01028350001 Vitis vinifera HOM05D004257 ORTHO05D005202 1.5e-128 463.4 346 71.1
Mapoly0023s0132 Marchantia polymorpha HOM05D004257 ORTHO05D005202 3.8e-127 458.8 328 69.2
Zm00001eb207770 Zea mays HOM05D004257 ORTHO05D005202 1.1e-126 457.2 350 67.1
Zm00001eb232580 Zea mays HOM05D004257 ORTHO05D005202 2.5e-126 456.1 350 66.6
AagrBONN_evm.TU.Sc2ySwM_344.3818 Anthoceros agrestis HOM05D004257 ORTHO05D005202 4.2e-126 455.3 315 72.1
Os02g0158300 Oryza sativa ssp. japonica HOM05D004257 ORTHO05D005202 9.4e-126 454.1 350 68.0
AagrBONN_evm.TU.Sc2ySwM_344.1200 Anthoceros agrestis HOM05D004257 ORTHO05D005202 2.7e-125 452.6 315 71.1
unitig_0.g1405 Utricularia gibba HOM05D004257 ORTHO05D005202 7.9e-125 451.1 346 70.2
CDE02G1046 Ceratophyllum demersum HOM05D004257 ORTHO05D005202 2.3e-124 449.5 346 68.2
SalBow5G3197 Salvia bowleyana HOM05D004257 ORTHO05D005202 4.4e-123 445.3 294 77.9
SalBow5G4297 Salvia bowleyana HOM05D004257 ORTHO05D005202 4.4e-123 445.3 294 77.9
SMO367G0216 Selaginella moellendorffii HOM05D004257 ORTHO05D005202 1.7e-122 443.4 315 69.5
unitig_61.g26464 Utricularia gibba HOM05D004257 ORTHO05D005202 8.2e-122 441.0 327 70.3
EL10Ac4g09002 Beta vulgaris HOM05D004257 ORTHO05D005202 6.5e-111 404.8 276 75.4
Pp3c23_13620 Physcomitrium patens HOM05D004257 ORTHO05D005202 1.1e-110 404.1 318 62.9
CBR_g20340 Chara braunii HOM05D004257 ORTHO05D005202 4.2e-110 402.1 336 61.6
Pp3c5_14840 Physcomitrium patens HOM05D004257 ORTHO05D005202 1.8e-108 396.7 326 62.3
ECA246G4101 Erigeron canadensis HOM05D004257 ORTHO05D005202 5.7e-107 391.7 231 84.0
C05p42800 Brassica napus HOM05D004257 ORTHO05D005202 3.6e-101 372.5 259 74.9
CDE02G2420 Ceratophyllum demersum HOM05D004257 ORTHO05D005202 3.6e-101 372.5 229 80.8
BcaB02g08451 Brassica carinata HOM05D004257 ORTHO05D005202 2.1e-93 346.7 199 84.4
Pp3c24_11040 Physcomitrium patens HOM05D004257 ORTHO05D005202 2.0e-83 313.5 298 56.7
PSO470G0001 Papaver somniferum HOM05D004257 ORTHO05D005202 4.1e-81 305.8 215 74.4
CAN.G65.83 Capsicum annuum HOM05D004257 ORTHO05D005202 5.0e-79 298.9 248 64.1
SGA_v2.0_scaffold25G10776 Striga asiatica HOM05D004257 ORTHO05D005202 4.3e-70 269.2 185 75.1
SEGI_22917 Sequoiadendron giganteum HOM05D004257 ORTHO05D005202 9.9e-67 258.1 182 68.1
SEGI_29481 Sequoiadendron giganteum HOM05D004257 ORTHO05D005202 9.9e-67 258.1 182 68.1
AagrBONN_evm.TU.Sc2ySwM_228.5393 Anthoceros agrestis HOM05D004257 ORTHO05D005202 4.7e-61 239.2 165 70.9
A07p22230 Brassica napus HOM05D004257 ORTHO05D005202 4.6e-56 222.6 131 82.4
Oeu036414.1 Olea europaea HOM05D004257 ORTHO05D005202 6.0e-56 222.2 123 87.8
Actinidia34751 Actinidia chinensis HOM05D000378 ORTHO05D005202 5.1e-55 219.2 119 86.6
SEGI_04972 Sequoiadendron giganteum HOM05D004257 ORTHO05D005202 1.8e-52 210.7 122 79.5
BcaC07g39794 Brassica carinata HOM05D004257 ORTHO05D005202 1.9e-46 190.7 164 62.2
BolC8t50595H Brassica oleracea HOM05D004257 ORTHO05D005202 3.3e-46 189.9 164 62.8
C08p29840 Brassica napus HOM05D004257 ORTHO05D005202 1.8e-44 184.1 164 61.6
AagrBONN_evm.TU.Sc2ySwM_228.5394 Anthoceros agrestis HOM05D004257 ORTHO05D005202 2.0e-35 154.1 127 60.6
Peaxi162Scf00643g00656 Petunia axillaris HOM05D004257 ORTHO05D005202 2.8e-29 133.7 118 64.4
Lsat_1_v5_gn_8_28701 Lactuca sativa HOM05D004257 ORTHO05D005202 5.8e-27 125.9 92 71.7
EL10Ac4g09003 Beta vulgaris HOM05D004257 ORTHO05D005202 1.7e-26 124.4 70 84.3
Aqoxy1G04111 Aquilegia oxysepala HOM05D004257 ORTHO05D004515 1.9e-25 120.9 164 45.1
Rhsim05G0133300 Rhododendron simsii HOM05D004257 ORTHO05D005202 2.5e-25 120.6 92 69.6
Lj6g0021985 Lotus japonicus HOM05D004257 ORTHO05D236371 3.1e-20 103.6 78 64.1
Rhsim08G0010200 Rhododendron simsii HOM05D000535 ORTHO05D000427 5.0e-18 96.3 71 67.6
Pp3c2_23370 Physcomitrium patens HOM05D004257 ORTHO05D005202 1.4e-15 88.2 111 45.9
BcaB01g01067 Brassica carinata HOM05D004257 ORTHO05D092693 1.1e-14 85.1 78 55.1
Rhsim04G0042100 Rhododendron simsii HOM05D004257 ORTHO05D005202 2.8e-13 80.5 138 42.0
Lsat_1_v5_gn_6_26721 Lactuca sativa HOM05D004257 ORTHO05D230427 7.2e-09 65.9 42 81.0
RhsimUnG0176200 Rhododendron simsii HOM05D000026 ORTHO05D000127 6.1e-08 62.8 51 62.7
CDE04G3164 Ceratophyllum demersum HOM05D004257 ORTHO05D130150 5.1e-07 59.7 36 69.4


User provided reference genes

Program Settings