Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g20120 Fragaria vesca HOM05D004377 ORTHO05D005168 7.2e-192 673.7 331 100.0
FAN24G1967 Fragaria x ananassa HOM05D004377 ORTHO05D005168 8.6e-137 490.7 388 69.8
FAN15G2264 Fragaria x ananassa HOM05D004377 ORTHO05D005168 5.3e-78 295.4 376 51.9
FAN27G2545 Fragaria x ananassa HOM05D004377 ORTHO05D005168 1.3e-52 211.1 362 42.0
FAN08G2251 Fragaria x ananassa HOM05D004377 ORTHO05D005168 9.5e-35 151.8 275 43.3
FAN18G3774 Fragaria x ananassa HOM05D004377 ORTHO05D005168 9.5e-35 151.8 275 43.3
RcHm_v2.0_Chr7g0203831 Rosa chinensis HOM05D004377 ORTHO05D005168 1.6e-34 151.0 275 43.3
FAN13G0320 Fragaria x ananassa HOM05D004377 ORTHO05D005168 2.8e-34 150.2 275 42.9
FAN04G2360 Fragaria x ananassa HOM05D004377 ORTHO05D005168 1.4e-33 147.9 275 42.9
Manes.02G041200 Manihot esculenta HOM05D004377 ORTHO05D005168 2.6e-32 143.7 276 40.9
Cfa012684 Carpinus fangiana HOM05D004377 ORTHO05D005168 3.4e-32 143.3 277 40.8
Haze_07947 Corylus avellana HOM05D004377 ORTHO05D005168 9.8e-32 141.7 276 40.6
Duzib205G1290 Durio zibethinus HOM05D004377 ORTHO05D005168 2.2e-31 140.6 275 39.6
MD06G1053000 Malus domestica HOM05D004377 ORTHO05D005168 3.7e-31 139.8 275 40.4
Ciclev10021569m.g Citrus clementina HOM05D004377 ORTHO05D005168 4.9e-31 139.4 276 40.2
Dinv39164 Davidia involucrata HOM05D004377 ORTHO05D005168 4.9e-31 139.4 280 37.9
CSS0001039 Camellia sinensis var. sinensis HOM05D004377 ORTHO05D005168 1.1e-30 138.3 280 38.2
MELO3C005517.2 Cucumis melo HOM05D004377 ORTHO05D005168 1.1e-30 138.3 274 38.0
CsaV3_5G004410 Cucumis sativus L. HOM05D004377 ORTHO05D005168 1.4e-30 137.9 274 38.0
Thecc.03G248500 Theobroma cacao HOM05D004377 ORTHO05D005168 1.4e-30 137.9 275 38.9
TWI81G0568 Tripterygium wilfordii HOM05D004377 ORTHO05D005168 1.9e-30 137.5 278 37.4
HanXRQChr03g0088831 Helianthus annuus HOM05D004377 ORTHO05D005168 2.4e-30 137.1 280 38.2
PGR031G0408 Punica granatum HOM05D004377 ORTHO05D005168 2.4e-30 137.1 275 38.2
GSVIVG01006273001 Vitis vinifera HOM05D004377 ORTHO05D005168 2.4e-30 137.1 277 39.0
Atru.chr9.1283 Acer truncatum HOM05D004377 ORTHO05D005168 3.2e-30 136.7 275 39.6
THA.LOC104798366 Tarenaya hassleriana HOM05D004377 ORTHO05D005168 3.2e-30 136.7 275 39.6
Prupe.5G065700 Prunus persica HOM05D004377 ORTHO05D005168 4.1e-30 136.3 275 38.9
Dinv21652 Davidia involucrata HOM05D004377 ORTHO05D005168 7.1e-30 135.6 277 39.4
Sabra01G0125600 Salix brachista HOM05D004377 ORTHO05D005168 7.1e-30 135.6 278 38.5
COL.COLO4_37134 Corchorus olitorius HOM05D004377 ORTHO05D005168 1.2e-29 134.8 278 37.8
FvH4_5g19370 Fragaria vesca HOM05D004377 ORTHO05D005168 1.2e-29 134.8 149 55.0
Phvul.003G222200 Phaseolus vulgaris HOM05D004377 ORTHO05D005168 1.2e-29 134.8 280 37.1
Gohir.D12G218200 Gossypium hirsutum HOM05D004377 ORTHO05D005168 1.6e-29 134.4 275 38.9
Gorai.008G233800 Gossypium raimondii HOM05D004377 ORTHO05D005168 1.6e-29 134.4 275 38.9
Lj4g0001332 Lotus japonicus HOM05D004377 ORTHO05D005168 1.6e-29 134.4 280 36.8
Lalb_Chr16g0386801 Lupinus albus HOM05D004377 ORTHO05D005168 1.6e-29 134.4 280 38.6
Peaxi162Scf00102g00106 Petunia axillaris HOM05D004377 ORTHO05D005168 1.6e-29 134.4 277 37.2
Lj8A268T28 Lonicera japonica HOM05D004377 ORTHO05D005168 2.1e-29 134.0 275 37.8
Actinidia02148 Actinidia chinensis HOM05D004377 ORTHO05D005168 2.7e-29 133.7 277 37.2
AL7G37300 Arabidopsis lyrata HOM05D004377 ORTHO05D005168 2.7e-29 133.7 277 39.7
ECA240G2341 Erigeron canadensis HOM05D004377 ORTHO05D005168 2.7e-29 133.7 280 37.5
Migut.A01127 Erythranthe guttata HOM05D004377 ORTHO05D005168 2.7e-29 133.7 274 36.5
Glyma.17G143400 Glycine max HOM05D004377 ORTHO05D005168 2.7e-29 133.7 280 37.1
VMungo0251G2239 Vigna mungo HOM05D004377 ORTHO05D005168 3.5e-29 133.3 280 36.8
arahy.Tifrunner.gnm1.ann1.XFA1VC Arachis hypogaea HOM05D004377 ORTHO05D005168 4.6e-29 132.9 280 37.5
CAN.G1227.21 Capsicum annuum HOM05D004377 ORTHO05D005168 4.6e-29 132.9 277 36.8
Lsat_1_v5_gn_6_92481 Lactuca sativa HOM05D004377 ORTHO05D005168 4.6e-29 132.9 280 36.8
CiPaw.12G050900 Carya illinoinensis HOM05D004377 ORTHO05D005168 6.0e-29 132.5 275 38.2
DCAR_006841 Daucus carota HOM05D004377 ORTHO05D005168 6.0e-29 132.5 277 37.2
Eucgr.D02097 Eucalyptus grandis HOM05D004377 ORTHO05D005168 6.0e-29 132.5 280 37.1
MD04G1059900 Malus domestica HOM05D004377 ORTHO05D005168 6.0e-29 132.5 275 38.5
Solyc08g007320.3 Solanum lycopersicum HOM05D004377 ORTHO05D005168 6.0e-29 132.5 277 36.8
Actinidia10840 Actinidia chinensis HOM05D004377 ORTHO05D005168 7.8e-29 132.1 277 38.3
CARHR224020 Cardamine hirsuta HOM05D004377 ORTHO05D005168 7.8e-29 132.1 277 39.4
Glyma.05G061700 Glycine max HOM05D004377 ORTHO05D005168 7.8e-29 132.1 275 38.5
Potri.003G078900 Populus trichocarpa HOM05D004377 ORTHO05D005168 7.8e-29 132.1 280 37.5
Carub.0007s2400 Capsella rubella HOM05D004377 ORTHO05D005168 1.0e-28 131.7 277 39.0
ClCG01G004220 Citrullus lanatus HOM05D004377 ORTHO05D005168 1.0e-28 131.7 285 35.8
Gohir.A12G215600 Gossypium hirsutum HOM05D004377 ORTHO05D005168 1.0e-28 131.7 278 37.1
Thhalv10025916m.g Eutrema salsugineum HOM05D004377 ORTHO05D005168 1.3e-28 131.3 277 39.4
AT4G17420 Arabidopsis thaliana HOM05D004377 ORTHO05D005168 1.7e-28 131.0 277 39.4
Gohir.A11G027200 Gossypium hirsutum HOM05D004377 ORTHO05D005168 1.7e-28 131.0 275 38.5
Potri.001G155900 Populus trichocarpa HOM05D004377 ORTHO05D005168 2.3e-28 130.6 274 38.7
Hma1.2p1_0316F.1_g122900 Hydrangea macrophylla HOM05D004377 ORTHO05D005168 3.0e-28 130.2 277 37.2
Sed0026125 Sechium edule HOM05D004377 ORTHO05D005168 3.0e-28 130.2 276 37.3
CANSAT21G0788 Cannabis sativa HOM05D004377 ORTHO05D005168 3.9e-28 129.8 277 38.6
Aa31sc151G40 Aethionema arabicum HOM05D006677 ORTHO05D008348 5.1e-28 129.4 279 38.0
Duzib068G0502 Durio zibethinus HOM05D004377 ORTHO05D005168 5.1e-28 129.4 259 40.9
Psat4g072760 Pisum sativum HOM05D004377 ORTHO05D005168 5.1e-28 129.4 280 37.1
Cc08_g12200 Coffea canephora HOM05D004377 ORTHO05D005168 6.6e-28 129.0 277 37.2
CARHR173960 Cardamine hirsuta HOM05D004377 ORTHO05D005168 8.6e-28 128.6 279 37.6
Nitab4.5_0000712g0120 Nicotiana tabacum HOM05D004377 ORTHO05D005168 8.6e-28 128.6 318 33.3
Sed0028099 Sechium edule HOM05D004377 ORTHO05D005168 8.6e-28 128.6 280 36.4
Nn4g26339 Nelumbo nucifera HOM05D004377 ORTHO05D005168 1.1e-27 128.3 274 37.2
Sabra03G0049000 Salix brachista HOM05D004377 ORTHO05D005168 1.5e-27 127.9 278 37.4
vmacro00002 Vaccinium macrocarpon HOM05D004377 ORTHO05D005168 1.5e-27 127.9 277 36.8
Lalb_Chr05g0221171 Lupinus albus HOM05D004377 ORTHO05D005168 1.9e-27 127.5 280 37.5
MSTRG.12119 Avicennia marina HOM05D004377 ORTHO05D005168 2.5e-27 127.1 274 35.8
Nitab4.5_0002225g0040 Nicotiana tabacum HOM05D004377 ORTHO05D005168 2.5e-27 127.1 283 35.3
vmacro14068 Vaccinium macrocarpon HOM05D004377 ORTHO05D005168 2.5e-27 127.1 277 38.3
Cpa.g.sc29.192 Carica papaya HOM05D004377 ORTHO05D005168 3.3e-27 126.7 147 52.4
DCAR_008505 Daucus carota HOM05D004377 ORTHO05D005168 3.3e-27 126.7 277 35.7
CSS0042619 Camellia sinensis var. sinensis HOM05D004377 ORTHO05D005168 4.3e-27 126.3 269 35.3
Lj4g0011374 Lotus japonicus HOM05D004377 ORTHO05D005168 4.3e-27 126.3 280 35.7
AT5G47420 Arabidopsis thaliana HOM05D004377 ORTHO05D005168 5.6e-27 125.9 279 38.4
Sp7g16770 Schrenkiella parvula HOM05D004377 ORTHO05D005168 5.6e-27 125.9 278 38.5
C07p31040 Brassica napus HOM05D006677 ORTHO05D008348 7.3e-27 125.6 279 36.9
AL8G10630 Arabidopsis lyrata HOM05D004377 ORTHO05D005168 9.5e-27 125.2 279 38.0
TPR.G37661 Trifolium pratense HOM05D004377 ORTHO05D005168 9.5e-27 125.2 280 36.8
Aqoxy5G00459 Aquilegia oxysepala HOM05D004377 ORTHO05D005168 1.2e-26 124.8 280 35.4
Thhalv10000986m.g Eutrema salsugineum HOM05D004377 ORTHO05D005168 1.6e-26 124.4 279 36.6
Nn1g02340 Nelumbo nucifera HOM05D004377 ORTHO05D005168 1.6e-26 124.4 278 36.7
RcHm_v2.0_Chr2g0120481 Rosa chinensis HOM05D004377 ORTHO05D005168 1.6e-26 124.4 159 48.4
RcHm_v2.0_Chr7g0203871 Rosa chinensis HOM05D004377 ORTHO05D005168 1.6e-26 124.4 245 41.6
Sp2g12120 Schrenkiella parvula HOM05D004377 ORTHO05D005168 1.6e-26 124.4 279 36.9
A01p19930 Brassica napus HOM05D004377 ORTHO05D005168 2.1e-26 124.0 277 38.6
A01p19950 Brassica napus HOM05D004377 ORTHO05D005168 2.1e-26 124.0 277 38.6
BcaC06g34256 Brassica carinata HOM05D004377 ORTHO05D005168 2.8e-26 123.6 283 36.4
BcaNung00095 Brassica carinata HOM05D004377 ORTHO05D005168 2.8e-26 123.6 277 38.3
Actinidia14411 Actinidia chinensis HOM05D004377 ORTHO05D005168 3.6e-26 123.2 122 56.6
BcaC09g50474 Brassica carinata HOM05D004377 ORTHO05D005168 4.7e-26 122.9 277 38.6
BraA01t01921Z Brassica rapa HOM05D004377 ORTHO05D005168 4.7e-26 122.9 277 38.3
Ca_21977_v3 Cicer arietinum L. HOM05D004377 ORTHO05D005168 6.2e-26 122.5 280 36.4
BraA02t08132Z Brassica rapa HOM05D004377 ORTHO05D005168 8.1e-26 122.1 279 36.6
Medtr4g100740 Medicago truncatula HOM05D004377 ORTHO05D005168 8.1e-26 122.1 277 37.9
PSO832G1836 Papaver somniferum HOM05D004377 ORTHO05D005168 8.1e-26 122.1 276 36.2
Rhsim07G0110500 Rhododendron simsii HOM05D004377 ORTHO05D005168 8.1e-26 122.1 287 37.6
Carub.0008s0037 Capsella rubella HOM05D004377 ORTHO05D005168 1.1e-25 121.7 279 37.3
Sc07g0009230 Simmondsia chinensis HOM05D004377 ORTHO05D005168 2.3e-25 120.6 277 37.5
C01p25030 Brassica napus HOM05D004377 ORTHO05D005168 3.1e-25 120.2 277 38.3
Lalb_Chr04g0253671 Lupinus albus HOM05D004377 ORTHO05D005168 3.1e-25 120.2 270 35.6
BolC7t43648H Brassica oleracea HOM05D006677 ORTHO05D008348 4.0e-25 119.8 273 36.6
BolC1t02447H Brassica oleracea HOM05D004377 ORTHO05D005168 6.8e-25 119.0 275 37.8
BolC2t10957H Brassica oleracea HOM05D004377 ORTHO05D005168 8.9e-25 118.6 276 37.0
BcaC06g31391 Brassica carinata HOM05D004377 ORTHO05D005168 1.2e-24 118.2 272 37.1
HanXRQChr17g0549351 Helianthus annuus HOM05D004377 ORTHO05D005168 1.2e-24 118.2 276 36.2
PSO210G5659 Papaver somniferum HOM05D004377 ORTHO05D005168 1.2e-24 118.2 276 35.5
SGA_v2.0_scaffold199G41214 Striga asiatica HOM05D004377 ORTHO05D005168 1.2e-24 118.2 147 46.9
A02p31280 Brassica napus HOM05D004377 ORTHO05D005168 1.5e-24 117.9 309 34.0
CDE02G4267 Ceratophyllum demersum HOM05D004377 ORTHO05D005168 2.6e-24 117.1 275 35.3
TAR375G0521 Trochodendron aralioides HOM05D004377 ORTHO05D005168 3.4e-24 116.7 281 35.6
arahy.Tifrunner.gnm1.ann1.ID9RWP Arachis hypogaea HOM05D004377 ORTHO05D005168 5.8e-24 115.9 267 36.0
Ah.12g054290 Amaranthus hybridus HOM05D004377 ORTHO05D005168 7.6e-24 115.5 298 32.9
AUR62007109 Chenopodium quinoa HOM05D004377 ORTHO05D005168 1.3e-23 114.8 276 36.2
unitig_736.g22277 Utricularia gibba HOM05D004377 ORTHO05D005168 1.3e-23 114.8 147 46.3
BcaC03g16958 Brassica carinata HOM05D004377 ORTHO05D005168 1.1e-22 111.7 275 37.1
C02p48650 Brassica napus HOM05D004377 ORTHO05D005168 1.1e-22 111.7 275 37.1
BcaC06g34254 Brassica carinata HOM05D003894 ORTHO05D004584 1.4e-22 111.3 148 48.0
BraA06t27381Z Brassica rapa HOM05D006677 ORTHO05D008348 1.9e-22 110.9 322 32.6
Gohir.D11G026400 Gossypium hirsutum HOM05D004377 ORTHO05D005168 2.1e-21 107.5 266 36.8
MBI08_g41738_MAGBIO Magnolia biondii HOM05D004377 ORTHO05D005168 2.1e-21 107.5 182 38.5
SEGI_38141 Sequoiadendron giganteum HOM05D004377 ORTHO05D005168 2.7e-21 107.1 278 34.2
Sopen08g003260 Solanum pennellii HOM05D004377 ORTHO05D005168 3.5e-21 106.7 222 37.4
arahy.Tifrunner.gnm1.ann1.E2A47G Arachis hypogaea HOM05D004377 ORTHO05D005168 7.8e-21 105.5 339 31.0
CDE05G2427 Ceratophyllum demersum HOM05D004377 ORTHO05D005168 7.8e-21 105.5 275 33.5
ATR0697G021 Amborella trichopoda HOM05D004377 ORTHO05D005168 2.3e-20 104.0 280 33.6
EL10Ac5g12360 Beta vulgaris HOM05D004377 ORTHO05D005168 2.3e-20 104.0 137 46.7
SHI09598 Sapria himalayana HOM05D004377 ORTHO05D005168 3.0e-20 103.6 147 43.5
Nitab4.5_0000618g0130 Nicotiana tabacum HOM05D004377 ORTHO05D005168 8.6e-20 102.1 275 32.0
Lsat_1_v5_gn_3_1221 Lactuca sativa HOM05D004377 ORTHO05D005168 4.3e-19 99.8 288 31.6
Gorai.007G028700 Gossypium raimondii HOM05D004377 ORTHO05D005168 7.3e-19 99.0 259 37.1
AUR62019971 Chenopodium quinoa HOM05D004377 ORTHO05D005168 2.1e-18 97.4 256 33.2
TAR629G1293 Trochodendron aralioides HOM05D004377 ORTHO05D005168 6.2e-18 95.9 261 32.6
MBI09_g26154_MAGBIO Magnolia biondii HOM05D004377 ORTHO05D005168 8.1e-18 95.5 261 33.3
HPP92_007932 Vanilla planifolia HOM05D004377 ORTHO05D005168 4.0e-17 93.2 280 31.1
HPP92_007952 Vanilla planifolia HOM05D004377 ORTHO05D005168 4.0e-17 93.2 280 31.1
SMO356G0134 Selaginella moellendorffii HOM05D004377 ORTHO05D005168 8.9e-17 92.0 176 37.5
Mapoly0006s0223 Marchantia polymorpha HOM05D004377 ORTHO05D005168 1.3e-15 88.2 137 40.1
Os03g0747300 Oryza sativa ssp. japonica HOM05D004377 ORTHO05D005168 1.7e-15 87.8 272 28.3
Oeu027011.1 Olea europaea HOM05D004377 ORTHO05D005168 2.9e-15 87.0 225 34.7
AagrBONN_evm.TU.Sc2ySwM_362.367 Anthoceros agrestis HOM05D004377 ORTHO05D005168 4.9e-15 86.3 138 38.4
SGA_v2.0_scaffold199G41183 Striga asiatica HOM05D004377 ORTHO05D005168 4.9e-15 86.3 304 28.6
Hund14575 Selenicereus undatus HOM05D004377 ORTHO05D005168 8.4e-15 85.5 108 46.3
Oeu012199.1 Olea europaea HOM05D004377 ORTHO05D005168 1.9e-14 84.3 81 54.3
Zm00001eb057110 Zea mays HOM05D004377 ORTHO05D005168 1.6e-13 81.3 136 36.0
arahy.Tifrunner.gnm1.ann1.CS1SDE Arachis hypogaea HOM05D004377 ORTHO05D005168 2.7e-13 80.5 310 29.4
TAR374G0316 Trochodendron aralioides HOM05D004377 ORTHO05D005168 1.3e-12 78.2 121 43.0
Actinidia31514 Actinidia chinensis HOM05D004377 ORTHO05D005168 2.4e-09 67.4 209 34.9
SEGI_18353 Sequoiadendron giganteum HOM05D004377 ORTHO05D005168 1.5e-08 64.7 82 47.6
MBI09_g24445_MAGBIO Magnolia biondii HOM05D004377 ORTHO05D005168 4.5e-08 63.2 119 36.1


User provided reference genes

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