Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g19780 Fragaria vesca HOM05D006778 ORTHO05D008341 1.7e-76 289.3 147 100.0
FAN15G2222 Fragaria x ananassa HOM05D006778 ORTHO05D008341 2.5e-64 248.8 147 89.1
RcHm_v2.0_Chr6g0285481 Rosa chinensis HOM05D006778 ORTHO05D008341 1.8e-62 242.7 147 84.4
FAN24G1005 Fragaria x ananassa HOM05D006778 ORTHO05D008341 1.6e-58 229.6 163 77.3
MD05G1182200 Malus domestica HOM05D006778 ORTHO05D008341 1.4e-46 189.9 146 71.9
Prupe.8G209000 Prunus persica HOM05D006778 ORTHO05D008341 1.0e-44 183.7 145 67.6
Actinidia37573 Actinidia chinensis HOM05D006778 ORTHO05D008341 1.1e-43 180.3 146 65.8
CiPaw.03G152900 Carya illinoinensis HOM05D006778 ORTHO05D008341 1.6e-42 176.4 147 65.3
Cfa002523 Carpinus fangiana HOM05D006778 ORTHO05D008341 3.0e-41 172.2 141 64.5
Glyma.10G042900 Glycine max HOM05D006778 ORTHO05D008341 3.0e-41 172.2 147 63.9
Lj3g0024250 Lotus japonicus HOM05D006778 ORTHO05D008341 5.2e-41 171.4 147 62.6
Manes.12G043800 Manihot esculenta HOM05D006778 ORTHO05D008341 5.2e-41 171.4 144 63.2
Lj5g0022938 Lotus japonicus HOM05D006778 ORTHO05D008341 8.8e-41 170.6 147 63.3
CiPaw.04G108200 Carya illinoinensis HOM05D006778 ORTHO05D008341 1.3e-39 166.8 174 55.2
TAR362G0656 Trochodendron aralioides HOM05D006778 ORTHO05D008341 2.2e-39 166.0 145 64.1
QL07p037469 Quercus lobata HOM05D006778 ORTHO05D008341 2.0e-37 159.5 164 56.7
Potri.002G252700 Populus trichocarpa HOM05D006778 ORTHO05D008341 7.7e-37 157.5 139 61.9
Lalb_Chr21g0314231 Lupinus albus HOM05D006778 ORTHO05D008341 1.3e-36 156.8 146 58.2
Sabra02G0191900 Salix brachista HOM05D006778 ORTHO05D008341 1.7e-36 156.4 145 60.7
Glyma.13G130200 Glycine max HOM05D006778 ORTHO05D008341 2.2e-36 156.0 141 60.3
arahy.Tifrunner.gnm1.ann1.01AYHN Arachis hypogaea HOM05D006778 ORTHO05D008341 5.0e-36 154.8 145 55.2
TPR.G33801 Trifolium pratense HOM05D006778 ORTHO05D008341 5.0e-36 154.8 151 60.3
GSVIVG01028519001 Vitis vinifera HOM05D006778 ORTHO05D008341 1.1e-35 153.7 145 57.9
Cpa.g.sc8.198 Carica papaya HOM05D006778 ORTHO05D008341 1.9e-35 152.9 142 55.6
Gohir.D08G211201 Gossypium hirsutum HOM05D006778 ORTHO05D008341 2.5e-35 152.5 153 56.2
THA.LOC104820057 Tarenaya hassleriana HOM05D006778 ORTHO05D008341 2.5e-35 152.5 144 59.0
Thecc.01G232400 Theobroma cacao HOM05D006778 ORTHO05D008341 3.2e-35 152.1 168 50.6
AUR62031811 Chenopodium quinoa HOM05D006778 ORTHO05D008341 5.5e-35 151.4 168 50.0
vmacro02733 Vaccinium macrocarpon HOM05D006778 ORTHO05D008341 5.5e-35 151.4 176 52.8
arahy.Tifrunner.gnm1.ann1.PE83GC Arachis hypogaea HOM05D006778 ORTHO05D008341 9.4e-35 150.6 145 54.5
Psat6g064720 Pisum sativum HOM05D006778 ORTHO05D008341 2.1e-34 149.4 151 57.0
ClCG07G001620 Citrullus lanatus HOM05D006778 ORTHO05D008341 3.6e-34 148.7 144 55.6
CANSAT01G2408 Cannabis sativa HOM05D006778 ORTHO05D008341 6.1e-34 147.9 150 55.3
CANSAT01G3118 Cannabis sativa HOM05D006778 ORTHO05D008341 6.1e-34 147.9 150 56.0
COL.COLO4_28579 Corchorus olitorius HOM05D006778 ORTHO05D008341 1.4e-33 146.7 154 53.9
Nn1g03098 Nelumbo nucifera HOM05D006778 ORTHO05D008341 1.4e-33 146.7 160 54.4
Medtr1g069150 Medicago truncatula HOM05D006778 ORTHO05D008341 6.7e-33 144.4 153 55.6
Nitab4.5_0001740g0070 Nicotiana tabacum HOM05D006778 ORTHO05D008341 6.7e-33 144.4 145 55.2
Rhsim13G0042100 Rhododendron simsii HOM05D006778 ORTHO05D008341 8.8e-33 144.1 141 56.7
BcaC09g51658 Brassica carinata HOM05D006778 ORTHO05D008341 1.2e-32 143.7 152 53.3
DCAR_012626 Daucus carota HOM05D006778 ORTHO05D008341 1.2e-32 143.7 141 58.9
EL10Ac7g17819 Beta vulgaris HOM05D006778 ORTHO05D008341 1.5e-32 143.3 141 52.5
CsaV3_6G036140 Cucumis sativus L. HOM05D006778 ORTHO05D008341 2.0e-32 142.9 145 52.4
Gorai.004G223900 Gossypium raimondii HOM05D006778 ORTHO05D008341 2.0e-32 142.9 166 50.6
Phvul.007G156300 Phaseolus vulgaris HOM05D006778 ORTHO05D008341 2.0e-32 142.9 151 55.6
Migut.D00505 Erythranthe guttata HOM05D006778 ORTHO05D008341 2.6e-32 142.5 144 52.1
Gohir.A08G193200 Gossypium hirsutum HOM05D006778 ORTHO05D008341 2.6e-32 142.5 161 50.9
Nitab4.5_0003180g0010 Nicotiana tabacum HOM05D006778 ORTHO05D008341 3.3e-32 142.1 145 54.5
BcaNung01362 Brassica carinata HOM05D006778 ORTHO05D008341 5.7e-32 141.4 152 55.9
ECA247G0226 Erigeron canadensis HOM05D000070 ORTHO05D003190 7.5e-32 141.0 140 55.0
Solyc06g008020.3 Solanum lycopersicum HOM05D006778 ORTHO05D008341 7.5e-32 141.0 145 53.1
Cc01_g17420 Coffea canephora HOM05D006778 ORTHO05D008341 9.7e-32 140.6 148 52.0
MELO3C026499.2 Cucumis melo HOM05D006778 ORTHO05D008341 1.3e-31 140.2 145 52.4
PGR044G1830 Punica granatum HOM05D006778 ORTHO05D008341 2.8e-31 139.0 142 52.1
CAN.G941.43 Capsicum annuum HOM05D006778 ORTHO05D008341 3.7e-31 138.7 145 53.1
Duzib133G1327 Durio zibethinus HOM05D006778 ORTHO05D008341 1.1e-30 137.1 165 48.5
Sed0012724 Sechium edule HOM05D006778 ORTHO05D008341 1.1e-30 137.1 144 50.7
SGA_v2.0_scaffold8G04666 Striga asiatica HOM05D006778 ORTHO05D008341 1.1e-30 137.1 147 53.7
Aqoxy2G03836 Aquilegia oxysepala HOM05D006778 ORTHO05D008341 4.5e-29 131.7 144 50.0
Sp7g26820 Schrenkiella parvula HOM05D006778 ORTHO05D008341 4.5e-29 131.7 152 49.3
CARHR236610 Cardamine hirsuta HOM05D006778 ORTHO05D008341 1.0e-28 130.6 170 50.6
Sopen06g002860 Solanum pennellii HOM05D006778 ORTHO05D008341 8.5e-28 127.5 145 47.6
AT4G28820 Arabidopsis thaliana HOM05D006778 ORTHO05D008341 1.9e-27 126.3 172 46.5
PGR044G0410 Punica granatum HOM05D006778 ORTHO05D008341 1.6e-26 123.2 139 49.6
Thhalv10026155m.g Eutrema salsugineum HOM05D006778 ORTHO05D008341 1.4e-25 120.2 172 45.3
A01p09090 Brassica napus HOM05D006778 ORTHO05D008341 2.3e-25 119.4 163 46.0
TWI14G0487 Tripterygium wilfordii HOM05D006778 ORTHO05D008341 8.8e-25 117.5 195 43.1
CDE06G1811 Ceratophyllum demersum HOM05D006778 ORTHO05D008341 1.2e-24 117.1 152 44.1
Pp3c19_5220 Physcomitrium patens HOM05D006778 ORTHO05D008341 1.5e-24 116.7 146 45.9
BolC1t01026H Brassica oleracea HOM05D006778 ORTHO05D008341 3.4e-24 115.5 167 44.9
Carub.0007s1182 Capsella rubella HOM05D006778 ORTHO05D008341 5.7e-24 114.8 175 42.9
ATR0787G018 Amborella trichopoda HOM05D006778 ORTHO05D008341 2.8e-23 112.5 146 44.5
CSS0042066 Camellia sinensis var. sinensis HOM05D006778 ORTHO05D008341 8.3e-23 110.9 157 45.2
AUR62008897 Chenopodium quinoa HOM05D006778 ORTHO05D008341 8.3e-23 110.9 143 46.2
Dinv19236 Davidia involucrata HOM05D006778 ORTHO05D008341 1.4e-22 110.2 151 46.4
CDE07G0370 Ceratophyllum demersum HOM05D006778 ORTHO05D008341 2.4e-22 109.4 146 43.8
HPP92_014070 Vanilla planifolia HOM05D006778 ORTHO05D008341 2.4e-22 109.4 145 44.8
Actinidia30101 Actinidia chinensis HOM05D006778 ORTHO05D008341 1.2e-21 107.1 78 71.8
Atru.chr5.1931 Acer truncatum HOM05D006778 ORTHO05D008341 1.6e-21 106.7 103 59.2
Haze_24755 Corylus avellana HOM05D006778 ORTHO05D008341 1.6e-21 106.7 107 53.3
Haze_24757 Corylus avellana HOM05D006778 ORTHO05D008341 1.6e-21 106.7 107 53.3
C01p10640 Brassica napus HOM05D006778 ORTHO05D008341 2.0e-21 106.3 171 40.4
AL7G23670 Arabidopsis lyrata HOM05D006778 ORTHO05D008341 2.7e-21 105.9 198 38.9
Mapoly0102s0014 Marchantia polymorpha HOM05D006778 ORTHO05D008341 5.9e-21 104.8 145 43.4
Zm00001eb149030 Zea mays HOM05D006778 ORTHO05D008341 5.9e-21 104.8 146 42.5
SMO111G0074 Selaginella moellendorffii HOM05D006778 ORTHO05D008341 2.9e-20 102.4 139 39.6
CBR_g29688 Chara braunii HOM05D006778 ORTHO05D008341 6.6e-20 101.3 154 39.6
BraA01t00857Z Brassica rapa HOM05D006778 ORTHO05D008341 1.9e-19 99.8 168 39.9
MD10G1170500 Malus domestica HOM05D006778 ORTHO05D008341 1.9e-19 99.8 140 44.3
PGSC0003DMG400014691 Solanum tuberosum HOM05D006778 ORTHO05D008341 1.6e-18 96.7 115 47.8
BolC7t46124H Brassica oleracea HOM05D006778 ORTHO05D008341 3.6e-18 95.5 195 34.9
C07p56450 Brassica napus HOM05D006778 ORTHO05D008341 6.1e-18 94.7 195 35.4
AagrBONN_evm.TU.Sc2ySwM_228.3325 Anthoceros agrestis HOM05D006778 ORTHO05D008341 1.4e-17 93.6 140 40.7
A03p58430 Brassica napus HOM05D006778 ORTHO05D008341 1.5e-16 90.1 185 37.3
Ca_09622_v3 Cicer arietinum L. HOM05D006778 ORTHO05D008341 9.8e-16 87.4 110 50.9
VMungo0720G2677 Vigna mungo HOM05D006778 ORTHO05D008341 2.2e-15 86.3 107 52.3
Aa31LG2G21570 Aethionema arabicum HOM05D006778 ORTHO05D008341 8.3e-15 84.3 157 36.9
Hund05528 Selenicereus undatus HOM05D006778 ORTHO05D008341 1.4e-14 83.6 134 42.5
Lsat_1_v5_gn_9_11140 Lactuca sativa HOM05D006778 ORTHO05D008341 5.4e-14 81.6 110 49.1
MCO09G744 Micromonas commoda HOM05D004020 ORTHO05D004735 9.2e-14 80.9 132 40.9
Sc17g0002480 Simmondsia chinensis HOM05D006778 ORTHO05D008341 9.2e-14 80.9 97 47.4
MBI11_g20194_MAGBIO Magnolia biondii HOM05D006778 ORTHO05D008341 2.0e-13 79.7 96 50.0
AagrBONN_evm.TU.Sc2ySwM_368.1574 Anthoceros agrestis HOM05D006778 ORTHO05D008341 7.8e-13 77.8 116 41.4
Peaxi162Scf00499g00413 Petunia axillaris HOM05D006778 ORTHO05D008341 7.8e-13 77.8 82 54.9
MSTRG.18371 Avicennia marina HOM05D006778 ORTHO05D008341 1.7e-12 76.6 144 39.6
PSO017G3634 Papaver somniferum HOM05D006778 ORTHO05D008341 8.6e-12 74.3 122 41.8
SalBow4G2567 Salvia bowleyana HOM05D006778 ORTHO05D008341 2.5e-11 72.8 54 68.5
Gohir.D08G007200 Gossypium hirsutum HOM05D006778 ORTHO05D008341 3.3e-11 72.4 91 52.7
Sed0026958 Sechium edule HOM05D006778 ORTHO05D008341 5.6e-11 71.6 77 51.9
Hma1.2p1_1858F.1_g305520 Hydrangea macrophylla HOM05D006778 ORTHO05D008341 7.3e-11 71.2 74 51.4
PSO063G2427 Papaver somniferum HOM05D006778 ORTHO05D008341 1.2e-10 70.5 111 41.4
Gohir.A05G416601 Gossypium hirsutum HOM05D006778 ORTHO05D008341 3.6e-10 68.9 91 51.6
Gohir.A05G417001 Gossypium hirsutum HOM05D006778 ORTHO05D008341 3.6e-10 68.9 91 51.6
Gorai.012G000200 Gossypium raimondii HOM05D006778 ORTHO05D008341 3.6e-10 68.9 91 51.6
SEGI_27672 Sequoiadendron giganteum HOM05D006778 ORTHO05D008341 2.6e-08 62.8 54 61.1
CSS0042063 Camellia sinensis var. sinensis HOM05D006778 ORTHO05D008341 8.3e-07 57.8 65 53.8


User provided reference genes

Program Settings