Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g17480 Fragaria vesca HOM05D006330 ORTHO05D008013 1.9e-178 629.0 317 100.0
FAN15G1514 Fragaria x ananassa HOM05D006330 ORTHO05D008013 9.0e-176 620.2 317 98.4
FAN24G2605 Fragaria x ananassa HOM05D006330 ORTHO05D008013 1.7e-174 615.9 317 98.4
RcHm_v2.0_Chr6g0282221 Rosa chinensis HOM05D006330 ORTHO05D008013 4.5e-167 591.3 317 93.7
Prupe.8G187200 Prunus persica HOM05D006330 ORTHO05D008013 4.1e-144 515.0 314 84.1
MD10G1148200 Malus domestica HOM05D006330 ORTHO05D008013 1.9e-141 506.1 316 83.5
Haze_03505 Corylus avellana HOM05D006330 ORTHO05D008013 6.1e-132 474.6 309 77.0
Cfa010572 Carpinus fangiana HOM05D006330 ORTHO05D008013 4.0e-131 471.9 309 77.3
QL09p047707 Quercus lobata HOM05D006330 ORTHO05D008013 2.2e-129 466.1 309 76.4
CANSAT01G2136 Cannabis sativa HOM05D006330 ORTHO05D008013 4.9e-129 464.9 309 76.1
TWI36G1481 Tripterygium wilfordii HOM05D006330 ORTHO05D008013 1.4e-128 463.4 306 77.5
CiPaw.13G055600 Carya illinoinensis HOM05D006330 ORTHO05D008013 1.8e-128 463.0 309 75.7
TAR362G0826 Trochodendron aralioides HOM05D006330 ORTHO05D008013 2.4e-128 462.6 308 76.6
GSVIVG01001532001 Vitis vinifera HOM05D006330 ORTHO05D008013 5.0e-126 454.9 305 78.0
Atru.chr6.3528 Acer truncatum HOM05D006330 ORTHO05D008013 2.1e-124 449.5 309 75.1
Ciclev10015989m.g Citrus clementina HOM05D006330 ORTHO05D008013 4.7e-124 448.4 316 72.8
Manes.12G055500 Manihot esculenta HOM05D006330 ORTHO05D008013 1.0e-123 447.2 311 73.6
Thecc.01G207700 Theobroma cacao HOM05D006330 ORTHO05D008013 3.1e-123 445.7 261 85.4
Duzib133G1456 Durio zibethinus HOM05D006330 ORTHO05D008013 8.9e-123 444.1 307 74.9
Nn7g37444 Nelumbo nucifera HOM05D006330 ORTHO05D008013 8.9e-123 444.1 310 73.5
Lsat_1_v5_gn_9_16880 Lactuca sativa HOM05D006330 ORTHO05D008013 4.4e-122 441.8 313 72.2
Gorai.007G161200 Gossypium raimondii HOM05D006330 ORTHO05D008013 7.5e-122 441.0 262 84.4
Lj2C1112G6 Lonicera japonica HOM05D006330 ORTHO05D008013 9.8e-122 440.7 269 82.5
MBI10_g35385_MAGBIO Magnolia biondii HOM05D006330 ORTHO05D008013 1.3e-121 440.3 262 84.0
Actinidia34530 Actinidia chinensis HOM05D006330 ORTHO05D008013 2.9e-121 439.1 307 72.6
FAN27G2337 Fragaria x ananassa HOM05D006330 ORTHO05D008013 3.7e-121 438.7 317 74.8
Gohir.D11G150300 Gossypium hirsutum HOM05D006330 ORTHO05D008013 4.9e-121 438.3 262 84.0
Cc01_g15880 Coffea canephora HOM05D006330 ORTHO05D008013 6.4e-121 438.0 267 81.6
Potri.014G175500 Populus trichocarpa HOM05D006330 ORTHO05D008013 8.3e-121 437.6 290 77.6
Eucgr.K02361 Eucalyptus grandis HOM05D006330 ORTHO05D008013 1.1e-120 437.2 285 77.5
Gohir.A11G143900 Gossypium hirsutum HOM05D006330 ORTHO05D008013 1.4e-120 436.8 309 74.1
PSO675G8704 Papaver somniferum HOM05D006330 ORTHO05D008013 5.4e-120 434.9 312 73.4
Psat4g208240 Pisum sativum HOM05D006330 ORTHO05D008013 1.2e-119 433.7 287 77.4
ECA247G1307 Erigeron canadensis HOM05D006330 ORTHO05D008013 1.6e-119 433.3 265 80.8
EL10Ac5g10587 Beta vulgaris HOM05D006330 ORTHO05D008013 7.8e-119 431.0 310 71.9
Sc05g0001630 Simmondsia chinensis HOM05D006330 ORTHO05D008013 1.3e-118 430.3 298 73.5
PGR044G2230 Punica granatum HOM05D006330 ORTHO05D008013 2.3e-118 429.5 267 81.6
Phvul.010G036400 Phaseolus vulgaris HOM05D006330 ORTHO05D008013 3.0e-118 429.1 314 71.7
TPR.G17377 Trifolium pratense HOM05D006330 ORTHO05D008013 3.0e-118 429.1 293 75.1
THA.LOC104804704 Tarenaya hassleriana HOM05D006330 ORTHO05D008013 5.0e-118 428.3 313 73.2
Actinidia23802 Actinidia chinensis HOM05D006330 ORTHO05D008013 8.6e-118 427.6 307 71.0
Glyma.03G097100 Glycine max HOM05D006330 ORTHO05D008013 8.6e-118 427.6 306 72.5
Lalb_Chr12g0210221 Lupinus albus HOM05D006330 ORTHO05D008013 1.1e-117 427.2 304 73.4
arahy.Tifrunner.gnm1.ann1.3RIK1P Arachis hypogaea HOM05D006330 ORTHO05D008013 1.5e-117 426.8 308 72.1
arahy.Tifrunner.gnm1.ann1.84ZR2Z Arachis hypogaea HOM05D006330 ORTHO05D008013 1.9e-117 426.4 310 71.3
Sopen09g015980 Solanum pennellii HOM05D006330 ORTHO05D008013 1.9e-117 426.4 300 74.0
VMungo0331G1131 Vigna mungo HOM05D006330 ORTHO05D008013 3.3e-117 425.6 310 71.0
MSTRG.21296 Avicennia marina HOM05D006330 ORTHO05D008013 4.3e-117 425.2 309 71.5
HPP92_007591 Vanilla planifolia HOM05D006330 ORTHO05D008013 4.3e-117 425.2 267 79.4
Aqoxy2G02383 Aquilegia oxysepala HOM05D006330 ORTHO05D008013 1.2e-116 423.7 273 80.6
HanXRQChr07g0190561 Helianthus annuus HOM05D006330 ORTHO05D008013 4.0e-115 418.7 263 78.7
Glyma.07G124200 Glycine max HOM05D006330 ORTHO05D008013 6.8e-115 417.9 306 71.6
SGA_v2.0_scaffold231G43447 Striga asiatica HOM05D006330 ORTHO05D008013 2.6e-114 416.0 287 74.6
Ca_23158_v3 Cicer arietinum L. HOM05D006330 ORTHO05D008013 4.4e-114 415.2 283 75.3
Medtr8g010130 Medicago truncatula HOM05D006330 ORTHO05D008013 2.2e-113 412.9 293 73.4
DCAR_004774 Daucus carota HOM05D006330 ORTHO05D008013 2.9e-113 412.5 312 69.2
MELO3C021126.2 Cucumis melo HOM05D006330 ORTHO05D008013 4.9e-113 411.8 272 76.8
ClCG09G008360 Citrullus lanatus HOM05D006330 ORTHO05D008013 6.4e-113 411.4 249 82.3
CsaV3_7G026730 Cucumis sativus L. HOM05D006330 ORTHO05D008013 8.3e-113 411.0 272 76.5
Zm00001eb168340 Zea mays HOM05D006330 ORTHO05D008013 4.1e-112 408.7 271 75.6
AUR62008069 Chenopodium quinoa HOM05D006330 ORTHO05D008013 5.4e-112 408.3 242 82.2
CDE02G1604 Ceratophyllum demersum HOM05D006330 ORTHO05D008013 9.2e-112 407.5 257 80.2
Migut.D00775 Erythranthe guttata HOM05D006330 ORTHO05D008013 4.6e-111 405.2 278 72.7
Sed0009827 Sechium edule HOM05D006330 ORTHO05D008013 6.0e-111 404.8 249 81.5
ATR0743G141 Amborella trichopoda HOM05D006330 ORTHO05D008013 1.3e-110 403.7 314 68.8
Os11g0247400 Oryza sativa ssp. japonica HOM05D006330 ORTHO05D008013 1.7e-110 403.3 276 73.9
SalBow3G0290 Salvia bowleyana HOM05D006330 ORTHO05D008013 1.7e-110 403.3 299 69.6
Rhsim01G0247700 Rhododendron simsii HOM05D006330 ORTHO05D008013 6.6e-110 401.4 248 79.8
vmacro14689 Vaccinium macrocarpon HOM05D006330 ORTHO05D008013 1.6e-108 396.7 259 77.6
Hund09482 Selenicereus undatus HOM05D006330 ORTHO05D008013 1.8e-107 393.3 304 69.4
CARHR101770 Cardamine hirsuta HOM05D006330 ORTHO05D008013 2.0e-106 389.8 310 65.8
Carub.0003s2579 Capsella rubella HOM05D006330 ORTHO05D008013 9.9e-106 387.5 299 68.6
C03p54570 Brassica napus HOM05D006330 ORTHO05D008013 2.2e-105 386.3 312 66.7
BolC3t17744H Brassica oleracea HOM05D006330 ORTHO05D008013 2.2e-105 386.3 312 66.7
Hma1.2p1_0161F.1_g071650 Hydrangea macrophylla HOM05D006330 ORTHO05D008013 2.2e-105 386.3 241 80.1
Ciclev10018050m.g Citrus clementina HOM05D006330 ORTHO05D008013 3.8e-105 385.6 234 82.1
Thhalv10002617m.g Eutrema salsugineum HOM05D006330 ORTHO05D008013 3.8e-105 385.6 310 66.5
Sabra14G0134300 Salix brachista HOM05D006330 ORTHO05D008013 1.1e-104 384.0 322 67.4
Sp3g22990 Schrenkiella parvula HOM05D006330 ORTHO05D008013 1.9e-104 383.3 310 65.2
AL3G41590 Arabidopsis lyrata HOM05D006330 ORTHO05D008013 9.2e-104 380.9 288 68.4
AT3G25470 Arabidopsis thaliana HOM05D006330 ORTHO05D008013 9.2e-104 380.9 306 65.0
BraA03t13548Z Brassica rapa HOM05D006330 ORTHO05D008013 9.2e-104 380.9 312 65.7
BcaB08g34453 Brassica carinata HOM05D006330 ORTHO05D008013 1.6e-103 380.2 302 66.9
Aa31sc18G40 Aethionema arabicum HOM05D006330 ORTHO05D008013 2.1e-103 379.8 302 66.9
A03p44190 Brassica napus HOM05D006330 ORTHO05D008013 2.1e-103 379.8 311 66.2
BcaC06g35817 Brassica carinata HOM05D006330 ORTHO05D008013 6.0e-103 378.3 307 66.4
COL.COLO4_34269 Corchorus olitorius HOM05D006330 ORTHO05D008013 3.0e-102 375.9 219 87.2
A07p06930 Brassica napus HOM05D006330 ORTHO05D008013 3.9e-102 375.6 307 65.5
BraA07t28484Z Brassica rapa HOM05D006330 ORTHO05D008013 3.9e-102 375.6 307 65.5
BolC7t41520H Brassica oleracea HOM05D006330 ORTHO05D008013 1.5e-101 373.6 308 66.2
C07p10530 Brassica napus HOM05D006330 ORTHO05D008013 2.5e-101 372.9 308 66.2
Lj3g0006219 Lotus japonicus HOM05D006330 ORTHO05D008013 4.9e-97 358.6 266 71.8
AUR62028646 Chenopodium quinoa HOM05D006330 ORTHO05D008013 3.2e-96 355.9 216 81.5
Peaxi162Scf00841g00112 Petunia axillaris HOM05D006330 ORTHO05D008013 4.6e-95 352.1 318 62.3
Pp3c24_1560 Physcomitrium patens HOM05D006330 ORTHO05D008013 4.6e-95 352.1 265 64.9
Mapoly0006s0124 Marchantia polymorpha HOM05D006330 ORTHO05D008013 1.3e-94 350.5 241 72.2
BcaC01g03225 Brassica carinata HOM05D006330 ORTHO05D008013 2.3e-94 349.7 312 62.5
Nitab4.5_0010469g0010 Nicotiana tabacum HOM05D006330 ORTHO05D008013 8.7e-94 347.8 255 72.9
Nitab4.5_0000038g0340 Nicotiana tabacum HOM05D006330 ORTHO05D008013 1.1e-93 347.4 255 73.3
CSS0004044 Camellia sinensis var. sinensis HOM05D006330 ORTHO05D008013 2.1e-92 343.2 243 72.8
Dinv28793 Davidia involucrata HOM05D006330 ORTHO05D008013 1.4e-91 340.5 262 71.8
Solyc09g047870.4 Solanum lycopersicum HOM05D006330 ORTHO05D008013 3.1e-91 339.3 241 73.9
Oeu049580.1 Olea europaea HOM05D006330 ORTHO05D008013 5.3e-91 338.6 223 78.0
CBR_g60689 Chara braunii HOM05D006330 ORTHO05D008013 1.9e-88 330.1 249 67.1
SMO141G0006 Selaginella moellendorffii HOM05D006330 ORTHO05D008013 5.3e-83 312.0 252 62.7
SMO186G0001 Selaginella moellendorffii HOM05D006330 ORTHO05D008013 1.1e-80 304.3 243 63.0
BcaB06g26747 Brassica carinata HOM05D006330 ORTHO05D008013 1.9e-80 303.5 313 56.5
Cpa.g.sc8.41 Carica papaya HOM05D006330 ORTHO05D008013 1.2e-79 300.8 220 71.8
PSO732G0743 Papaver somniferum HOM05D006330 ORTHO05D008013 1.3e-78 297.4 180 83.9
HanXRQChr07g0198371 Helianthus annuus HOM05D006330 ORTHO05D008013 1.2e-71 274.2 196 73.5
MCO07G099 Micromonas commoda HOM05D006330 ORTHO05D008013 1.8e-70 270.4 243 59.7
Cre10.g428900 Chlamydomonas reinhardtii HOM05D006330 ORTHO05D008013 5.9e-66 255.4 247 58.3
CAN.G253.5 Capsicum annuum HOM05D006330 ORTHO05D008013 1.0e-54 218.0 130 84.6
PRCOL_00000451 Prasinoderma coloniale HOM05D006330 ORTHO05D008013 1.8e-54 217.2 298 44.3
SEGI_37995 Sequoiadendron giganteum HOM05D006330 ORTHO05D008013 5.7e-45 185.7 119 74.8
AagrBONN_evm.TU.Sc2ySwM_368.2380 Anthoceros agrestis HOM05D006330 ORTHO05D008013 2.3e-38 163.7 116 67.2
arahy.Tifrunner.gnm1.ann1.VBTZ6V Arachis hypogaea HOM05D006330 ORTHO05D008013 5.2e-38 162.5 112 72.3
PSO675G8411 Papaver somniferum HOM05D006330 ORTHO05D008013 3.7e-36 156.4 95 75.8
Hma1.2p1_0161F.1_g071660 Hydrangea macrophylla HOM05D006330 ORTHO05D008013 1.2e-34 151.4 89 83.1
Cfa009322 Carpinus fangiana HOM05D006614 ORTHO05D008217 3.0e-30 136.7 86 77.9
CDE04G0367 Ceratophyllum demersum HOM05D006330 ORTHO05D008013 2.3e-25 120.6 93 65.6
BcaB06g26875 Brassica carinata HOM05D006330 ORTHO05D008013 2.9e-12 77.0 64 67.2
RcHm_v2.0_Chr5g0065021 Rosa chinensis HOM05D006330 ORTHO05D008013 3.2e-11 73.6 46 78.3
VMungo1383G2211 Vigna mungo HOM05D006330 ORTHO05D434633 5.4e-11 72.8 44 77.3
RcHm_v2.0_Chr6g0265711 Rosa chinensis HOM05D006330 ORTHO05D348319 8.9e-06 55.5 34 85.3


User provided reference genes

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