Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g12330 Fragaria vesca HOM05D001282 ORTHO05D197162 7.9e-49 196.8 102 100.0
FAN27G2795 Fragaria x ananassa HOM05D001282 ORTHO05D001236 1.8e-45 185.7 102 95.1
RcHm_v2.0_Chr6g0272351 Rosa chinensis HOM05D001282 ORTHO05D001236 8.0e-41 170.2 102 86.3
FAN24G1485 Fragaria x ananassa HOM05D001282 ORTHO05D013879 3.4e-31 138.3 75 96.0
Prupe.8G052600 Prunus persica HOM05D001282 ORTHO05D001236 1.8e-21 105.9 115 55.7
MD10G1045800 Malus domestica HOM05D001282 ORTHO05D001236 1.2e-17 93.2 111 55.0
CiPaw.15G083300 Carya illinoinensis HOM05D001282 ORTHO05D001236 3.4e-15 85.1 100 56.0
Duzib116G0685 Durio zibethinus HOM05D001282 ORTHO05D001236 1.1e-13 80.1 102 52.9
Gohir.A05G249900 Gossypium hirsutum HOM05D001282 ORTHO05D001236 1.1e-13 80.1 110 50.9
COL.COLO4_05835 Corchorus olitorius HOM05D001282 ORTHO05D001236 1.8e-13 79.3 114 50.9
Gohir.D05G251700 Gossypium hirsutum HOM05D001282 ORTHO05D001236 1.8e-13 79.3 110 50.9
Gorai.009G263100 Gossypium raimondii HOM05D001282 ORTHO05D001236 1.8e-13 79.3 110 50.9
Potri.013G115300 Populus trichocarpa HOM05D001282 ORTHO05D001236 1.8e-13 79.3 103 53.4
Thecc.08G200600 Theobroma cacao HOM05D001282 ORTHO05D001236 1.8e-13 79.3 114 51.8
Dinv41681 Davidia involucrata HOM05D001282 ORTHO05D001236 2.4e-13 79.0 100 53.0
CiPaw.16G062800 Carya illinoinensis HOM05D001282 ORTHO05D001236 3.2e-13 78.6 115 50.4
Haze_17898 Corylus avellana HOM05D001282 ORTHO05D001236 4.1e-13 78.2 98 53.1
QL02p034232 Quercus lobata HOM05D001282 ORTHO05D001236 4.1e-13 78.2 97 53.6
Duzib177G0296 Durio zibethinus HOM05D001282 ORTHO05D001236 5.4e-13 77.8 102 52.9
Potri.019G085900 Populus trichocarpa HOM05D001282 ORTHO05D001236 9.2e-13 77.0 116 50.0
Rhsim06G0098800 Rhododendron simsii HOM05D001282 ORTHO05D001236 9.2e-13 77.0 91 56.0
Manes.02G190200 Manihot esculenta HOM05D001282 ORTHO05D001236 1.6e-12 76.3 93 57.0
vmacro12505 Vaccinium macrocarpon HOM05D001282 ORTHO05D001236 1.6e-12 76.3 115 48.7
Sabra13G0097500 Salix brachista HOM05D001282 ORTHO05D001236 2.0e-12 75.9 116 49.1
Cfa018208 Carpinus fangiana HOM05D001282 ORTHO05D001236 2.7e-12 75.5 100 51.0
Nitab4.5_0000531g0020 Nicotiana tabacum HOM05D001282 ORTHO05D001236 4.6e-12 74.7 103 52.4
Peaxi162Scf00268g01314 Petunia axillaris HOM05D001282 ORTHO05D001236 4.6e-12 74.7 103 52.4
Actinidia02595 Actinidia chinensis HOM05D001282 ORTHO05D001236 7.8e-12 73.9 105 51.4
CANSAT25G2305 Cannabis sativa HOM05D001282 ORTHO05D001236 7.8e-12 73.9 113 46.0
Ciclev10000547m.g Citrus clementina HOM05D001282 ORTHO05D001236 1.0e-11 73.6 116 48.3
Cc00_g07180 Coffea canephora HOM05D001282 ORTHO05D001236 1.3e-11 73.2 89 55.1
GSVIVG01034887001 Vitis vinifera HOM05D001282 ORTHO05D001236 1.3e-11 73.2 98 52.0
Manes.18G099200 Manihot esculenta HOM05D001282 ORTHO05D001236 1.7e-11 72.8 118 46.6
CSS0047588 Camellia sinensis var. sinensis HOM05D001282 ORTHO05D001236 2.3e-11 72.4 117 47.9
CAN.G199.24 Capsicum annuum HOM05D001282 ORTHO05D001236 2.3e-11 72.4 103 51.5
CsaV3_7G024220 Cucumis sativus L. HOM05D001282 ORTHO05D001236 2.3e-11 72.4 95 52.6
Nitab4.5_0010710g0020 Nicotiana tabacum HOM05D001282 ORTHO05D001236 2.3e-11 72.4 103 51.5
TWI34G0755 Tripterygium wilfordii HOM05D001282 ORTHO05D001236 2.3e-11 72.4 114 48.2
Dinv05403 Davidia involucrata HOM05D001282 ORTHO05D001236 3.0e-11 72.0 98 51.0
Gohir.A02G061200 Gossypium hirsutum HOM05D001282 ORTHO05D001236 3.0e-11 72.0 95 52.6
Gohir.D02G066600 Gossypium hirsutum HOM05D001282 ORTHO05D001236 3.0e-11 72.0 95 52.6
Gorai.005G075500 Gossypium raimondii HOM05D001282 ORTHO05D001236 3.0e-11 72.0 95 52.6
PGR042G1721 Punica granatum HOM05D001282 ORTHO05D001236 3.9e-11 71.6 96 49.0
PGSC0003DMG400026118 Solanum tuberosum HOM05D001282 ORTHO05D001236 3.9e-11 71.6 103 51.5
Nitab4.5_0006501g0020 Nicotiana tabacum HOM05D001282 ORTHO05D001236 5.0e-11 71.2 103 51.5
RcHm_v2.0_Chr6g0272361 Rosa chinensis HOM05D001282 ORTHO05D001236 5.0e-11 71.2 116 45.7
MELO3C023672.2 Cucumis melo HOM05D001282 ORTHO05D001236 6.6e-11 70.9 95 51.6
Sabra19G0096500 Salix brachista HOM05D001282 ORTHO05D001236 6.6e-11 70.9 102 52.0
TAR628G0098 Trochodendron aralioides HOM05D001282 ORTHO05D001236 6.6e-11 70.9 115 44.3
CSS0014311 Camellia sinensis var. sinensis HOM05D001282 ORTHO05D001236 8.6e-11 70.5 89 55.1
Atru.chr13.1849 Acer truncatum HOM05D001282 ORTHO05D001236 1.1e-10 70.1 114 49.1
Hund27073 Selenicereus undatus HOM05D001282 ORTHO05D001236 1.1e-10 70.1 89 51.7
Solyc06g065460.2 Solanum lycopersicum HOM05D001282 ORTHO05D001236 1.1e-10 70.1 103 50.5
Sopen06g023950 Solanum pennellii HOM05D001282 ORTHO05D001236 1.1e-10 70.1 103 50.5
HanXRQChr04g0111621 Helianthus annuus HOM05D001282 ORTHO05D001236 1.5e-10 69.7 107 47.7
Sp1g29530 Schrenkiella parvula HOM05D001282 ORTHO05D001236 1.5e-10 69.7 122 45.1
Carub.0001s3246 Capsella rubella HOM05D001282 ORTHO05D001236 1.9e-10 69.3 109 47.7
FAN24G3448 Fragaria x ananassa HOM05D001282 ORTHO05D001236 1.9e-10 69.3 116 46.6
Lj7C301G2 Lonicera japonica HOM05D001282 ORTHO05D001236 1.9e-10 69.3 117 47.9
Cpa.g.sc66.77 Carica papaya HOM05D001282 ORTHO05D001236 2.5e-10 68.9 94 52.1
FvH4_2g12350 Fragaria vesca HOM05D001282 ORTHO05D001236 2.5e-10 68.9 116 46.6
MBI17_g06060_MAGBIO Magnolia biondii HOM05D001282 ORTHO05D001236 2.5e-10 68.9 103 46.6
Prupe.8G052300 Prunus persica HOM05D001282 ORTHO05D001236 2.5e-10 68.9 93 51.6
CARHR033780 Cardamine hirsuta HOM05D001282 ORTHO05D001236 3.3e-10 68.6 122 45.1
AL1G48870 Arabidopsis lyrata HOM05D001282 ORTHO05D001236 4.3e-10 68.2 122 45.1
Oeu004772.5 Olea europaea HOM05D001282 ORTHO05D001236 4.3e-10 68.2 113 46.0
MSTRG.25430 Avicennia marina HOM05D001282 ORTHO05D001236 5.6e-10 67.8 102 50.0
Glyma.10G218000 Glycine max HOM05D001282 ORTHO05D001236 5.6e-10 67.8 89 51.7
Glyma.20G174000 Glycine max HOM05D001282 ORTHO05D001236 5.6e-10 67.8 89 51.7
Aqoxy6G00140 Aquilegia oxysepala HOM05D001282 ORTHO05D001236 7.3e-10 67.4 97 46.4
Nitab4.5_0000159g0080 Nicotiana tabacum HOM05D001282 ORTHO05D001236 7.3e-10 67.4 114 47.4
Sed0014195 Sechium edule HOM05D001282 ORTHO05D001236 7.3e-10 67.4 92 51.1
THA.LOC104806780 Tarenaya hassleriana HOM05D001282 ORTHO05D001236 7.3e-10 67.4 107 49.5
AT1G34320 Arabidopsis thaliana HOM05D001282 ORTHO05D001236 9.5e-10 67.0 122 44.3
FAN20G0193 Fragaria x ananassa HOM05D001282 ORTHO05D001236 9.5e-10 67.0 114 45.6
PSO170G2937 Papaver somniferum HOM05D001282 ORTHO05D001236 9.5e-10 67.0 93 50.5
MD05G1039900 Malus domestica HOM05D001282 ORTHO05D001236 1.2e-09 66.6 102 48.0
Oeu030009.1 Olea europaea HOM05D001282 ORTHO05D001236 1.2e-09 66.6 102 48.0
MD10G1045400 Malus domestica HOM05D001282 ORTHO05D001236 1.6e-09 66.2 98 49.0
MD10G1045700 Malus domestica HOM05D001282 ORTHO05D001236 1.6e-09 66.2 98 49.0
PSO782G4055 Papaver somniferum HOM05D001282 ORTHO05D001236 1.6e-09 66.2 93 50.5
Lsat_1_v5_gn_1_8340 Lactuca sativa HOM05D001282 ORTHO05D001236 2.1e-09 65.9 99 47.5
BcaC08g43785 Brassica carinata HOM05D001282 ORTHO05D001236 4.7e-09 64.7 123 43.1
A09p32140 Brassica napus HOM05D001282 ORTHO05D001236 4.7e-09 64.7 123 42.3
C06p11670 Brassica napus HOM05D001282 ORTHO05D001236 4.7e-09 64.7 123 42.3
BolC6t36297H Brassica oleracea HOM05D001282 ORTHO05D001236 4.7e-09 64.7 123 43.1
BraA09t38759Z Brassica rapa HOM05D001282 ORTHO05D001236 4.7e-09 64.7 97 48.5
BcaB07g33134 Brassica carinata HOM05D001282 ORTHO05D001236 6.2e-09 64.3 124 41.9
Hund16807 Selenicereus undatus HOM05D001282 ORTHO05D001236 6.2e-09 64.3 116 42.2
Nn5g27829 Nelumbo nucifera HOM05D001282 ORTHO05D001236 8.0e-09 63.9 107 45.8
SalBow7G1442 Salvia bowleyana HOM05D001282 ORTHO05D001236 8.0e-09 63.9 109 43.1
TAR624G1140 Trochodendron aralioides HOM05D001282 ORTHO05D001236 8.0e-09 63.9 105 44.8
Eucgr.F02632 Eucalyptus grandis HOM05D001282 ORTHO05D001236 1.1e-08 63.5 93 49.5
Medtr1g096970 Medicago truncatula HOM05D001282 ORTHO05D001236 1.4e-08 63.2 89 50.6
Phvul.007G088000 Phaseolus vulgaris HOM05D001282 ORTHO05D001236 1.4e-08 63.2 84 48.8
Psat6g189400 Pisum sativum HOM05D001282 ORTHO05D001236 1.4e-08 63.2 113 44.2
TPR.G15723 Trifolium pratense HOM05D001282 ORTHO05D001236 1.4e-08 63.2 112 43.8
DCAR_014782 Daucus carota HOM05D001282 ORTHO05D001236 1.8e-08 62.8 106 43.4
Eucgr.H05069 Eucalyptus grandis HOM05D001282 ORTHO05D001236 1.8e-08 62.8 98 49.0
Dinv23356 Davidia involucrata HOM05D001282 ORTHO05D001236 2.3e-08 62.4 95 46.3
Aa31LG6G8400 Aethionema arabicum HOM05D001282 ORTHO05D001236 3.1e-08 62.0 96 50.0
DCAR_010069 Daucus carota HOM05D001282 ORTHO05D001236 3.1e-08 62.0 111 45.9
TWI32G0875 Tripterygium wilfordii HOM05D001282 ORTHO05D001236 3.1e-08 62.0 114 43.9
Thhalv10007023m.g Eutrema salsugineum HOM05D001282 ORTHO05D001236 4.0e-08 61.6 120 43.3
arahy.Tifrunner.gnm1.ann1.SUJ24G Arachis hypogaea HOM05D001282 ORTHO05D001236 5.2e-08 61.2 95 46.3
Lj5g0007456 Lotus japonicus HOM05D001282 ORTHO05D001236 5.2e-08 61.2 113 44.2
AUR62023586 Chenopodium quinoa HOM05D001282 ORTHO05D001236 6.8e-08 60.8 104 45.2
Ca_27945_v3 Cicer arietinum L. HOM05D001282 ORTHO05D001236 6.8e-08 60.8 112 43.8
ECA247G3423 Erigeron canadensis HOM05D001282 ORTHO05D001236 8.9e-08 60.5 104 44.2
CAN.G61.15 Capsicum annuum HOM05D001282 ORTHO05D001236 2.0e-07 59.3 89 49.4
Lalb_Chr01g0009961 Lupinus albus HOM05D001282 ORTHO05D001236 2.0e-07 59.3 87 49.4
HPP92_019376 Vanilla planifolia HOM05D001282 ORTHO05D001236 2.6e-07 58.9 91 46.2
VMungo0720G0238 Vigna mungo HOM05D001282 ORTHO05D001236 2.6e-07 58.9 89 48.3
Lalb_Chr06g0161921 Lupinus albus HOM05D001282 ORTHO05D001236 3.4e-07 58.5 113 41.6
SGA_v2.0_scaffold118G32455 Striga asiatica HOM05D001282 ORTHO05D001236 3.4e-07 58.5 114 41.2
TAR381G0652 Trochodendron aralioides HOM05D001282 ORTHO05D001236 3.4e-07 58.5 99 40.4
arahy.Tifrunner.gnm1.ann1.AMY8LP Arachis hypogaea HOM05D001282 ORTHO05D001236 5.8e-07 57.8 95 46.3
TAR624G0793 Trochodendron aralioides HOM05D001282 ORTHO05D001236 5.8e-07 57.8 104 41.3
EL10Ac1g00063 Beta vulgaris HOM05D001282 ORTHO05D001236 7.5e-07 57.4 92 45.7
Migut.C01229 Erythranthe guttata HOM05D001282 ORTHO05D001236 7.5e-07 57.4 101 46.5
Sopen11g009000 Solanum pennellii HOM05D001282 ORTHO05D001236 9.8e-07 57.0 113 41.6
Solyc11g017000.2 Solanum lycopersicum HOM05D001282 ORTHO05D001236 2.2e-06 55.8 113 40.7
Sopen11g009010 Solanum pennellii HOM05D001282 ORTHO05D001236 2.2e-06 55.8 113 40.7
Lalb_Chr21g0305691 Lupinus albus HOM05D001282 ORTHO05D001236 2.9e-06 55.5 90 44.4
Ah.05g177830 Amaranthus hybridus HOM05D001282 ORTHO05D001236 4.9e-06 54.7 88 46.6
HPP92_006858 Vanilla planifolia HOM05D001282 ORTHO05D001236 6.4e-06 54.3 101 41.6
HPP92_006874 Vanilla planifolia HOM05D001282 ORTHO05D001236 6.4e-06 54.3 101 41.6
Zm00001eb146270 Zea mays HOM05D001282 ORTHO05D001236 8.3e-06 53.9 100 43.0


User provided reference genes

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