Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g11640 Fragaria vesca HOM05D003729 ORTHO05D004384 0.0e+00 1345.5 678 100.0
RcHm_v2.0_Chr6g0270881 Rosa chinensis HOM05D003729 ORTHO05D004384 0.0e+00 1224.9 680 91.0
FAN24G0230 Fragaria x ananassa HOM05D003729 ORTHO05D004384 0.0e+00 1174.1 678 89.7
Prupe.8G004300 Prunus persica HOM05D003729 ORTHO05D004384 0.0e+00 1081.6 715 78.0
Prupe.5G014500 Prunus persica HOM05D003729 ORTHO05D004384 0.0e+00 1075.8 685 80.4
FAN15G2573 Fragaria x ananassa HOM05D003729 ORTHO05D004384 2.7e-310 1068.1 674 84.0
CiPaw.09G047000 Carya illinoinensis HOM05D003729 ORTHO05D004384 2.8e-294 1015.0 682 75.5
QL06p031735 Quercus lobata HOM05D003729 ORTHO05D004384 7.8e-289 996.9 684 75.0
Manes.15G116200 Manihot esculenta HOM05D003729 ORTHO05D004384 1.7e-288 995.7 681 73.7
Duzib106G1244 Durio zibethinus HOM05D003729 ORTHO05D004384 1.5e-284 982.6 687 73.2
GSVIVG01033615001 Vitis vinifera HOM05D003729 ORTHO05D004384 3.4e-284 981.5 682 73.3
TAR629G1039 Trochodendron aralioides HOM05D003729 ORTHO05D004384 9.8e-284 979.9 685 74.3
Dinv26813 Davidia involucrata HOM05D003729 ORTHO05D004384 3.5e-281 971.5 697 72.0
CSS0000349 Camellia sinensis var. sinensis HOM05D003729 ORTHO05D004384 3.3e-279 964.9 684 72.7
Dinv34365 Davidia involucrata HOM05D003729 ORTHO05D004384 7.3e-279 963.8 698 71.9
Glyma.09G171000 Glycine max HOM05D003729 ORTHO05D004384 1.6e-278 962.6 687 70.5
COL.COLO4_31341 Corchorus olitorius HOM05D003729 ORTHO05D004384 4.7e-278 961.1 670 72.5
Glyma.07G106900 Glycine max HOM05D003729 ORTHO05D004384 6.2e-278 960.7 687 70.3
Eucgr.B01227 Eucalyptus grandis HOM05D003729 ORTHO05D004384 8.1e-278 960.3 686 72.3
Gohir.D11G323300 Gossypium hirsutum HOM05D003729 ORTHO05D004384 2.3e-277 958.7 685 70.8
Gorai.007G353300 Gossypium raimondii HOM05D003729 ORTHO05D004384 2.3e-277 958.7 685 70.8
VMungo0464G0714 Vigna mungo HOM05D003729 ORTHO05D004384 3.1e-277 958.4 684 70.5
Hma1.2p1_0402F.1_g145090 Hydrangea macrophylla HOM05D003729 ORTHO05D004384 8.9e-277 956.8 685 71.8
Gohir.A11G307900 Gossypium hirsutum HOM05D003729 ORTHO05D004384 2.9e-275 951.8 685 70.4
Phvul.004G146700 Phaseolus vulgaris HOM05D003729 ORTHO05D004384 8.3e-275 950.3 686 70.3
Atru.chr11.1446 Acer truncatum HOM05D003729 ORTHO05D004384 2.4e-274 948.7 690 71.7
Atru.chr11.1476 Acer truncatum HOM05D003729 ORTHO05D004384 2.4e-274 948.7 690 71.7
Actinidia38159 Actinidia chinensis HOM05D003729 ORTHO05D004384 2.1e-273 945.7 683 71.3
Cfa020012 Carpinus fangiana HOM05D003729 ORTHO05D004384 7.8e-273 943.7 683 71.6
Rhsim04G0111000 Rhododendron simsii HOM05D003729 ORTHO05D004384 1.0e-272 943.3 687 71.5
Psat5g246840 Pisum sativum HOM05D003729 ORTHO05D004384 5.1e-272 941.0 677 70.3
arahy.Tifrunner.gnm1.ann1.UC9EW5 Arachis hypogaea HOM05D003729 ORTHO05D004384 4.3e-271 937.9 684 71.1
Lalb_Chr06g0173631 Lupinus albus HOM05D003729 ORTHO05D004384 4.3e-271 937.9 683 69.8
Ca_11233_v3 Cicer arietinum L. HOM05D003729 ORTHO05D004384 7.3e-271 937.2 694 68.9
PGR031G2313 Punica granatum HOM05D003729 ORTHO05D004384 7.3e-271 937.2 679 71.1
EL10Ac3g07219 Beta vulgaris HOM05D003729 ORTHO05D004384 1.4e-269 932.9 682 71.3
Cc06_g19080 Coffea canephora HOM05D003729 ORTHO05D004384 1.2e-268 929.9 672 71.4
Sopen10g034990 Solanum pennellii HOM05D003729 ORTHO05D004384 9.9e-268 926.8 673 70.9
Aqoxy3G00221 Aquilegia oxysepala HOM05D003729 ORTHO05D004384 1.3e-267 926.4 679 71.4
Lj6g0002169 Lotus japonicus HOM05D003729 ORTHO05D004384 3.2e-266 921.8 678 69.9
Nn7g37723 Nelumbo nucifera HOM05D003729 ORTHO05D004384 7.1e-266 920.6 685 70.1
ClCG09G015010 Citrullus lanatus HOM05D003729 ORTHO05D004384 9.2e-266 920.2 687 69.6
Nitab4.5_0005447g0050 Nicotiana tabacum HOM05D003729 ORTHO05D004384 1.2e-265 919.8 680 69.7
CAN.G1099.5 Capsicum annuum HOM05D003729 ORTHO05D004384 3.5e-265 918.3 685 69.9
Potri.016G037400 Populus trichocarpa HOM05D003729 ORTHO05D004384 6.6e-264 914.1 692 68.9
THA.LOC104802558 Tarenaya hassleriana HOM05D003729 ORTHO05D004384 8.7e-264 913.7 682 69.8
HanXRQChr12g0359771 Helianthus annuus HOM05D003729 ORTHO05D004384 2.5e-263 912.1 683 69.3
vmacro09025 Vaccinium macrocarpon HOM05D003729 ORTHO05D004384 1.1e-261 906.7 738 66.7
Medtr2g081080 Medicago truncatula HOM05D003729 ORTHO05D004384 1.4e-261 906.4 678 68.4
Peaxi162Scf00146g00613 Petunia axillaris HOM05D003729 ORTHO05D004384 2.4e-261 905.6 677 69.0
HanXRQChr10g0311271 Helianthus annuus HOM05D003729 ORTHO05D004384 5.2e-261 904.4 681 69.2
Ah.04g151040 Amaranthus hybridus HOM05D003729 ORTHO05D004384 6.9e-261 904.0 678 68.9
CsaV3_7G006250 Cucumis sativus L. HOM05D003729 ORTHO05D004384 9.9e-260 900.2 691 68.3
Sabra16G0044200 Salix brachista HOM05D003729 ORTHO05D004384 2.2e-259 899.0 717 66.1
Sabra16G0039300 Salix brachista HOM05D003729 ORTHO05D004384 3.8e-259 898.3 717 66.1
DCAR_013638 Daucus carota HOM05D003729 ORTHO05D004384 7.1e-258 894.0 681 68.6
Sed0006249 Sechium edule HOM05D003729 ORTHO05D004384 4.6e-257 891.3 684 67.4
ECA234G1736 Erigeron canadensis HOM05D003729 ORTHO05D004384 1.1e-255 886.7 682 68.3
Lsat_1_v5_gn_5_75341 Lactuca sativa HOM05D003729 ORTHO05D004384 7.3e-255 884.0 695 67.1
Lj1g0021267 Lotus japonicus HOM05D003729 ORTHO05D004384 1.6e-254 882.9 678 68.3
AUR62023904 Chenopodium quinoa HOM05D003729 ORTHO05D004384 8.1e-254 880.6 647 69.6
Thecc.05G137800 Theobroma cacao HOM05D003729 ORTHO05D004384 1.8e-253 879.4 685 67.3
PSO782G2431 Papaver somniferum HOM05D003729 ORTHO05D004384 1.7e-251 872.8 681 67.0
MBI04_g42401_MAGBIO Magnolia biondii HOM05D003729 ORTHO05D004384 2.4e-250 869.0 690 66.7
PSO478G2512 Papaver somniferum HOM05D003729 ORTHO05D004384 3.5e-249 865.1 680 66.2
ATR0757G154 Amborella trichopoda HOM05D003729 ORTHO05D004384 3.0e-248 862.1 691 65.7
Aa31LG10G11890 Aethionema arabicum HOM05D003729 ORTHO05D004384 8.7e-248 860.5 688 64.8
AUR62003735 Chenopodium quinoa HOM05D003729 ORTHO05D004384 1.1e-247 860.1 708 64.3
CARHR167140 Cardamine hirsuta HOM05D003729 ORTHO05D004384 9.0e-245 850.5 688 64.5
Sp5g05590 Schrenkiella parvula HOM05D003729 ORTHO05D004384 1.2e-244 850.1 688 64.5
Carub.0005s2373 Capsella rubella HOM05D003729 ORTHO05D004384 2.2e-243 845.9 687 64.5
Thhalv10005807m.g Eutrema salsugineum HOM05D003729 ORTHO05D004384 3.8e-243 845.1 689 64.0
MD06G1011700 Malus domestica HOM05D003729 ORTHO05D004384 1.4e-242 843.2 451 90.5
BolC8t50846H Brassica oleracea HOM05D003729 ORTHO05D004384 2.5e-242 842.4 684 64.3
BcaC07g40019 Brassica carinata HOM05D003729 ORTHO05D004384 4.2e-242 841.6 684 64.5
C08p32320 Brassica napus HOM05D003729 ORTHO05D004384 5.5e-242 841.3 684 64.3
A09p49920 Brassica napus HOM05D003729 ORTHO05D004384 9.3e-242 840.5 687 64.0
BraA09t40443Z Brassica rapa HOM05D003729 ORTHO05D004384 1.6e-241 839.7 687 64.0
CANSAT64G1452 Cannabis sativa HOM05D003729 ORTHO05D004384 4.6e-241 838.2 678 64.5
AL5G38440 Arabidopsis lyrata HOM05D003729 ORTHO05D004384 1.5e-239 833.2 690 63.5
unitig_27.g24938 Utricularia gibba HOM05D003729 ORTHO05D004384 1.5e-239 833.2 699 62.4
Ciclev10027979m.g Citrus clementina HOM05D003729 ORTHO05D004384 4.3e-239 831.6 586 71.5
MSTRG.19814 Avicennia marina HOM05D003729 ORTHO05D004384 5.6e-239 831.2 643 68.0
HPP92_002023 Vanilla planifolia HOM05D003729 ORTHO05D004384 2.8e-238 828.9 682 63.6
Migut.N03364 Erythranthe guttata HOM05D003729 ORTHO05D004384 3.7e-238 828.6 688 63.4
SGA_v2.0_scaffold149G36565 Striga asiatica HOM05D003729 ORTHO05D004384 1.1e-234 817.0 689 63.6
BcaC08g44817 Brassica carinata HOM05D003729 ORTHO05D004384 1.6e-233 813.1 692 62.9
BolC6t37563H Brassica oleracea HOM05D003729 ORTHO05D004384 1.0e-232 810.4 692 62.7
Sc13g0001200 Simmondsia chinensis HOM05D003729 ORTHO05D004384 5.1e-232 808.1 511 79.3
A07p23200 Brassica napus HOM05D003729 ORTHO05D004384 8.7e-232 807.4 689 63.1
BraA07t29984Z Brassica rapa HOM05D003729 ORTHO05D004384 8.7e-232 807.4 689 63.1
C06p24040 Brassica napus HOM05D003729 ORTHO05D004384 2.5e-226 789.3 718 60.3
Nitab4.5_0000381g0340 Nicotiana tabacum HOM05D003729 ORTHO05D004384 8.8e-224 780.8 1008 47.2
Zm00001eb373800 Zea mays HOM05D003729 ORTHO05D004384 5.3e-221 771.5 681 59.9
BcaC07g40088 Brassica carinata HOM05D003729 ORTHO05D004384 3.2e-218 762.3 692 59.8
TPR.G32867 Trifolium pratense HOM05D003729 ORTHO05D004384 2.0e-215 753.1 827 52.1
AT3G56990 Arabidopsis thaliana HOM05D003729 ORTHO05D004384 3.1e-205 719.2 512 70.1
SMO334G0073 Selaginella moellendorffii HOM05D003729 ORTHO05D004384 3.6e-201 705.7 680 54.9
arahy.Tifrunner.gnm1.ann1.HP2N24 Arachis hypogaea HOM05D003729 ORTHO05D004384 2.3e-200 703.0 542 68.1
Mapoly0009s0077 Marchantia polymorpha HOM05D003729 ORTHO05D004384 4.4e-199 698.7 704 52.0
Pp3c18_60 Physcomitrium patens HOM05D003729 ORTHO05D004384 2.4e-197 693.0 714 52.5
MELO3C018665.2 Cucumis melo HOM05D003729 ORTHO05D004384 3.5e-196 689.1 679 56.1
AagrBONN_evm.TU.Sc2ySwM_228.5647 Anthoceros agrestis HOM05D003729 ORTHO05D004384 2.5e-194 682.9 676 53.7
Lj1A1094G13 Lonicera japonica HOM05D003729 ORTHO05D004384 4.5e-188 662.1 438 75.3
Os06g0128400 Oryza sativa ssp. japonica HOM05D003729 ORTHO05D004384 1.9e-178 630.2 431 69.4
CBR_g12410 Chara braunii HOM05D003729 ORTHO05D004384 1.7e-158 563.9 702 43.9
Zm00001eb378550 Zea mays HOM05D003729 ORTHO05D004384 7.8e-156 555.1 538 55.9
AUR62016564 Chenopodium quinoa HOM05D003729 ORTHO05D004384 1.0e-155 554.7 569 54.5
BcaB02g07627 Brassica carinata HOM05D003729 ORTHO05D004384 6.2e-153 545.4 553 56.4
MCO06G073 Micromonas commoda HOM05D003729 ORTHO05D004384 1.1e-138 498.0 709 41.9
Cre03.g159950 Chlamydomonas reinhardtii HOM05D003729 ORTHO05D004384 3.9e-131 473.0 711 38.5
Thecc.05G137400 Theobroma cacao HOM05D003729 ORTHO05D004384 5.3e-120 436.0 434 54.4
PRCOL_00000752 Prasinoderma coloniale HOM05D003729 ORTHO05D004384 1.0e-115 421.8 537 42.8
SEGI_15849 Sequoiadendron giganteum HOM05D003729 ORTHO05D004384 1.0e-115 421.8 452 53.5
Thecc.05G137700 Theobroma cacao HOM05D003729 ORTHO05D004384 3.6e-108 396.7 299 67.9
vmacro10990 Vaccinium macrocarpon HOM05D003729 ORTHO05D004384 1.2e-103 381.7 405 55.6
SHI40172 Sapria himalayana HOM05D003729 ORTHO05D004384 2.2e-94 350.9 432 49.3
Rhsim06G0100100 Rhododendron simsii HOM05D003729 ORTHO05D004384 6.5e-86 322.8 219 73.1
Atru.chr1.117 Acer truncatum HOM05D003729 ORTHO05D004384 9.4e-85 318.9 673 36.3
SHI42965 Sapria himalayana HOM05D003729 ORTHO05D004384 4.4e-82 310.1 372 48.4
SHI43747 Sapria himalayana HOM05D003729 ORTHO05D004384 6.3e-81 306.2 304 54.3
Cfa025239 Carpinus fangiana HOM05D003729 ORTHO05D004384 2.2e-78 297.7 648 32.1
Cpa.g.sc5.183 Carica papaya HOM05D003729 ORTHO05D004384 8.8e-75 285.8 256 60.9
vmacro10989 Vaccinium macrocarpon HOM05D003729 ORTHO05D004384 3.2e-64 250.8 262 53.1
SHI45339 Sapria himalayana HOM05D003729 ORTHO05D004384 1.2e-63 248.8 240 52.9
Oeu059338.2 Olea europaea HOM05D003729 ORTHO05D004384 6.6e-62 243.0 360 46.7
Cpa.g.sc1212.1 Carica papaya HOM05D003729 ORTHO05D004384 8.6e-62 242.7 141 85.1
Lj1A1094G14 Lonicera japonica HOM05D003729 ORTHO05D004384 5.8e-58 229.9 263 53.2
Haze_16229 Corylus avellana HOM05D003729 ORTHO05D004384 1.9e-56 224.9 266 53.4
SHI46975 Sapria himalayana HOM05D003729 ORTHO05D004384 7.8e-55 219.5 186 59.1
Haze_20214 Corylus avellana HOM05D003729 ORTHO05D004384 5.0e-54 216.9 264 51.9
Haze_20210 Corylus avellana HOM05D003729 ORTHO05D004384 4.7e-52 210.3 264 50.8
Thecc.05G138100 Theobroma cacao HOM05D003729 ORTHO05D004384 4.0e-51 207.2 130 76.9
Thecc.05G137500 Theobroma cacao HOM05D003729 ORTHO05D004384 9.2e-48 196.1 234 53.8
HanXRQChr09g0238921 Helianthus annuus HOM05D003729 ORTHO05D004384 2.1e-47 194.9 107 86.0
Haze_16233 Corylus avellana HOM05D003729 ORTHO05D004384 6.6e-46 189.9 119 80.7
SEGI_35907 Sequoiadendron giganteum HOM05D003729 ORTHO05D004384 4.0e-43 180.6 119 69.7
Haze_20209 Corylus avellana HOM05D003729 ORTHO05D004384 4.9e-41 173.7 102 81.4
Haze_20213 Corylus avellana HOM05D003729 ORTHO05D004384 1.4e-40 172.2 102 80.4
arahy.Tifrunner.gnm1.ann1.7FD8QN Arachis hypogaea HOM05D003729 ORTHO05D004384 9.2e-40 169.5 207 49.3
QL07p009838 Quercus lobata HOM05D003729 ORTHO05D004384 1.2e-39 169.1 127 70.1
Haze_16231 Corylus avellana HOM05D003729 ORTHO05D004384 8.6e-38 162.9 175 49.1
AUR62022314 Chenopodium quinoa HOM05D000534 ORTHO05D000389 7.3e-37 159.8 149 55.7
Glyma.03G135700 Glycine max HOM05D003729 ORTHO05D004384 9.6e-37 159.5 207 42.5
Haze_16230 Corylus avellana HOM05D003729 ORTHO05D004384 3.4e-34 151.0 79 87.3
SHI49287 Sapria himalayana HOM05D003729 ORTHO05D004384 5.8e-34 150.2 244 38.5
Hund24619 Selenicereus undatus HOM05D003729 ORTHO05D004384 2.9e-33 147.9 155 53.5
Gohir.A07G111501 Gossypium hirsutum HOM05D003729 ORTHO05D004384 5.4e-32 143.7 89 74.2
Gohir.D02G195125 Gossypium hirsutum HOM05D003729 ORTHO05D004384 5.4e-32 143.7 89 74.2
Gohir.D06G065600 Gossypium hirsutum HOM05D003729 ORTHO05D004384 5.4e-32 143.7 89 74.2
vmacro12362 Vaccinium macrocarpon HOM05D003729 ORTHO05D004384 1.2e-31 142.5 79 82.3
Gohir.D05G190600 Gossypium hirsutum HOM05D003729 ORTHO05D004384 7.8e-31 139.8 85 75.3
SHI44105 Sapria himalayana HOM05D003729 ORTHO05D004384 1.0e-30 139.4 107 58.9
Zm00001eb034510 Zea mays HOM05D003729 ORTHO05D004384 1.7e-30 138.7 106 62.3
Gorai.004G004200 Gossypium raimondii HOM05D003729 ORTHO05D004384 2.1e-28 131.7 104 67.3
SHI46293 Sapria himalayana HOM05D003729 ORTHO05D004384 2.0e-26 125.2 70 75.7
Haze_16235 Corylus avellana HOM05D003729 ORTHO05D004384 2.2e-25 121.7 107 62.6
SHI45328 Sapria himalayana HOM05D003729 ORTHO05D004384 1.9e-24 118.6 72 69.4
SHI38377 Sapria himalayana HOM05D003729 ORTHO05D004384 1.9e-21 108.6 62 80.6
Cpa.g.sc5.181 Carica papaya HOM05D003729 ORTHO05D004384 5.6e-21 107.1 56 83.9
SHI53576 Sapria himalayana HOM05D003729 ORTHO05D004384 9.6e-21 106.3 62 80.6
Sabra16G0029600 Salix brachista HOM05D000075 ORTHO05D000073 1.3e-20 105.9 88 63.6
SHI46294 Sapria himalayana HOM05D003729 ORTHO05D004384 2.1e-20 105.1 70 71.4
SHI50183 Sapria himalayana HOM05D003729 ORTHO05D004384 1.8e-19 102.1 97 55.7
FvH4_3g33711 Fragaria vesca HOM05D003729 ORTHO05D001837 1.2e-18 99.4 96 54.2
Zm00001eb077600 Zea mays HOM05D001162 ORTHO05D029047 1.5e-18 99.0 69 63.8
Zm00001eb284510 Zea mays HOM05D001162 ORTHO05D001218 1.5e-18 99.0 56 75.0
Zm00001eb173210 Zea mays HOM05D001162 ORTHO05D001218 3.4e-18 97.8 56 73.2
Sabra16G0039200 Salix brachista HOM05D002722 ORTHO05D003076 4.9e-17 94.0 77 59.7
QL01p046327 Quercus lobata HOM05D003729 ORTHO05D004384 1.9e-16 92.0 50 88.0
QL93p0119_0007 Quercus lobata HOM05D003729 ORTHO05D004384 1.9e-16 92.0 50 88.0
Haze_20208 Corylus avellana HOM05D003729 ORTHO05D004384 1.2e-15 89.4 55 70.9
SHI51948 Sapria himalayana HOM05D003729 ORTHO05D004384 1.2e-15 89.4 183 39.3
SHI48245 Sapria himalayana HOM05D003729 ORTHO05D004384 6.0e-15 87.0 63 68.3
SHI45329 Sapria himalayana HOM05D003729 ORTHO05D004384 1.0e-14 86.3 47 85.1
Sabra16G0022500 Salix brachista HOM05D000075 ORTHO05D000073 2.3e-14 85.1 57 73.7
Medtr8g007595 Medicago truncatula HOM05D003729 ORTHO05D004384 2.5e-13 81.6 48 77.1
SHI49946 Sapria himalayana HOM05D003729 ORTHO05D004384 4.8e-12 77.4 125 36.0
Sabra16G0044400 Salix brachista HOM05D002722 ORTHO05D003076 1.4e-11 75.9 77 50.6
SHI50413 Sapria himalayana HOM05D003729 ORTHO05D004384 5.8e-10 70.5 204 34.8
Oeu029504.1 Olea europaea HOM05D003729 ORTHO05D004384 6.5e-09 67.0 97 46.4
Sabra06G0025400 Salix brachista HOM05D003729 ORTHO05D004384 8.4e-09 66.6 142 33.8
THA.LOC104802556 Tarenaya hassleriana HOM05D004531 ORTHO05D005484 8.4e-09 66.6 119 42.0
Medtr8g007590 Medicago truncatula HOM05D003729 ORTHO05D004384 4.2e-08 64.3 36 75.0
SHI48244 Sapria himalayana HOM05D003729 ORTHO05D004384 9.3e-08 63.2 39 69.2
SHI40171 Sapria himalayana HOM05D003729 ORTHO05D004384 2.1e-07 62.0 71 52.1
SHI54010 Sapria himalayana HOM05D003729 ORTHO05D004384 2.7e-07 61.6 34 85.3
SHI51578 Sapria himalayana HOM05D003729 ORTHO05D004384 5.1e-06 57.4 32 84.4
FvH4_1g30561 Fragaria vesca HOM05D033425 ORTHO05D197409 6.7e-06 57.0 71 45.1
FvH4_c4g00011 Fragaria vesca HOM05D033425 ORTHO05D196479 6.7e-06 57.0 71 45.1


User provided reference genes

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