Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g06920 Fragaria vesca HOM05D000823 ORTHO05D000088 1.1e-89 333.2 159 100.0
FAN27G3396 Fragaria x ananassa HOM05D000823 ORTHO05D000088 1.5e-73 279.6 145 90.3
RcHm_v2.0_Chr6g0259241 Rosa chinensis HOM05D000823 ORTHO05D000088 9.1e-60 233.8 150 75.3
FAN20G2588 Fragaria x ananassa HOM05D000823 ORTHO05D000088 8.6e-58 227.3 159 74.2
RcHm_v2.0_Chr6g0259251 Rosa chinensis HOM05D000823 ORTHO05D000088 8.3e-45 184.1 154 63.0
FAN27G1325 Fragaria x ananassa HOM05D000823 ORTHO05D000088 1.4e-36 156.8 193 47.7
FvH4_2g07300 Fragaria vesca HOM05D000823 ORTHO05D000088 1.6e-35 153.3 193 47.2
FAN24G0466 Fragaria x ananassa HOM05D000823 ORTHO05D000088 1.6e-35 153.3 193 47.2
RcHm_v2.0_Chr6g0259881 Rosa chinensis HOM05D000823 ORTHO05D000088 3.5e-35 152.1 204 43.1
FAN23G1978 Fragaria x ananassa HOM05D000823 ORTHO05D009132 2.3e-18 96.3 169 35.5
FAN27G2261 Fragaria x ananassa HOM05D000823 ORTHO05D000088 5.1e-18 95.1 173 38.2
FvH4_2g06970 Fragaria vesca HOM05D000823 ORTHO05D000088 6.6e-18 94.7 173 37.6
FAN12G2331 Fragaria x ananassa HOM05D000823 ORTHO05D000088 6.6e-18 94.7 169 35.5
FvH4_4g19990 Fragaria vesca HOM05D000823 ORTHO05D009132 1.5e-17 93.6 171 35.1
FAN07G2326 Fragaria x ananassa HOM05D000823 ORTHO05D009132 3.3e-17 92.4 169 36.1
RcHm_v2.0_Chr6g0259791 Rosa chinensis HOM05D000823 ORTHO05D000088 5.6e-17 91.7 102 46.1
FAN19G0591 Fragaria x ananassa HOM05D000823 ORTHO05D009132 1.8e-15 86.7 169 34.3
RcHm_v2.0_Chr6g0259331 Rosa chinensis HOM05D000823 ORTHO05D000088 2.4e-15 86.3 171 34.5
FAN15G3650 Fragaria x ananassa HOM05D000823 ORTHO05D000088 4.0e-15 85.5 162 37.7
RcHm_v2.0_Chr4g0425711 Rosa chinensis HOM05D000823 ORTHO05D000088 5.3e-15 85.1 171 32.7
RcHm_v2.0_Chr6g0259811 Rosa chinensis HOM05D000823 ORTHO05D009132 9.9e-14 80.9 171 35.1
FvH4_2g06960 Fragaria vesca HOM05D000823 ORTHO05D000088 1.9e-12 76.6 159 32.7
FAN24G1365 Fragaria x ananassa HOM05D000823 ORTHO05D009132 7.1e-12 74.7 170 32.9
Prupe.8G113100 Prunus persica HOM05D000823 ORTHO05D000088 1.2e-11 73.9 99 39.4
FvH4_2g07240 Fragaria vesca HOM05D000823 ORTHO05D009132 1.6e-11 73.6 170 32.4
QL11p039132 Quercus lobata HOM05D000823 ORTHO05D000088 1.6e-11 73.6 172 30.8
FvH4_1g22700 Fragaria vesca HOM05D000823 ORTHO05D000088 2.1e-11 73.2 146 32.9
FAN15G0739 Fragaria x ananassa HOM05D000823 ORTHO05D000088 2.1e-11 73.2 98 41.8
FAN24G2044 Fragaria x ananassa HOM05D000823 ORTHO05D000088 2.7e-11 72.8 155 36.8
RcHm_v2.0_Chr6g0259781 Rosa chinensis HOM05D000823 ORTHO05D000088 4.6e-11 72.0 209 29.2
RcHm_v2.0_Chr6g0259931 Rosa chinensis HOM05D000823 ORTHO05D000088 1.5e-09 67.0 160 31.2
FAN15G2779 Fragaria x ananassa HOM05D000823 ORTHO05D000088 1.3e-08 63.9 77 42.9
Thhalv10015705m.g Eutrema salsugineum HOM05D007600 ORTHO05D009132 2.1e-08 63.2 131 30.5
Eucgr.D00268 Eucalyptus grandis HOM05D000395 ORTHO05D000088 3.6e-08 62.4 125 33.6
FvH4_4g20070 Fragaria vesca HOM05D000823 ORTHO05D000088 3.6e-08 62.4 144 33.3
FAN20G1433 Fragaria x ananassa HOM05D000001 ORTHO05D009729 1.8e-07 60.1 74 43.2
Carub.0006s1638 Capsella rubella HOM05D007600 ORTHO05D009132 4.0e-07 58.9 113 31.0
Duzib248G0282 Durio zibethinus HOM05D000823 ORTHO05D009132 4.0e-07 58.9 129 29.5
Cpa.g.sc132.63 Carica papaya HOM05D000395 ORTHO05D000088 5.3e-07 58.5 108 38.0
Eucgr.D00269 Eucalyptus grandis HOM05D000395 ORTHO05D000088 5.3e-07 58.5 125 31.2
Manes.07G112905 Manihot esculenta HOM05D000395 ORTHO05D000088 5.3e-07 58.5 132 28.0
Manes.10G033150 Manihot esculenta HOM05D000395 ORTHO05D000088 5.3e-07 58.5 112 33.0
Phvul.011G050800 Phaseolus vulgaris HOM05D000823 ORTHO05D000088 5.3e-07 58.5 109 33.9
CARHR195070 Cardamine hirsuta HOM05D007600 ORTHO05D009132 6.9e-07 58.2 143 27.3
TWI09G0938 Tripterygium wilfordii HOM05D000395 ORTHO05D000088 6.9e-07 58.2 143 31.5
Aa31LG11G11510 Aethionema arabicum HOM05D007600 ORTHO05D009132 9.0e-07 57.8 100 31.0
Cc10_g03680 Coffea canephora HOM05D000823 ORTHO05D000088 1.2e-06 57.4 117 30.8
Glyma.11G124300 Glycine max HOM05D000823 ORTHO05D000088 1.2e-06 57.4 149 30.2
arahy.Tifrunner.gnm1.ann1.Q52IRU Arachis hypogaea HOM05D000395 ORTHO05D000088 1.5e-06 57.0 115 35.7
CSS0021571 Camellia sinensis var. sinensis HOM05D000395 ORTHO05D000088 1.5e-06 57.0 155 30.3
Cfa004943 Carpinus fangiana HOM05D001372 ORTHO05D002010 1.5e-06 57.0 120 30.8
CiPaw.01G027100 Carya illinoinensis HOM05D000395 ORTHO05D000088 2.0e-06 56.6 99 35.4
Gohir.D12G067800 Gossypium hirsutum HOM05D000395 ORTHO05D000088 2.0e-06 56.6 105 36.2
Gorai.008G071200 Gossypium raimondii HOM05D000395 ORTHO05D000088 2.0e-06 56.6 105 36.2
Dinv26761 Davidia involucrata HOM05D000395 ORTHO05D000088 2.6e-06 56.2 152 25.0
Potri.004G230100 Populus trichocarpa HOM05D000395 ORTHO05D000088 2.6e-06 56.2 121 31.4
TPR.G15766 Trifolium pratense HOM05D000823 ORTHO05D000088 2.6e-06 56.2 113 35.4
Gohir.A12G067300 Gossypium hirsutum HOM05D000395 ORTHO05D000088 3.4e-06 55.8 130 33.1
Lj2A565G28 Lonicera japonica HOM05D000395 ORTHO05D000088 3.4e-06 55.8 138 27.5
MD02G1159700 Malus domestica HOM05D000395 ORTHO05D000088 3.4e-06 55.8 132 29.5
TPR.G10227 Trifolium pratense HOM05D000395 ORTHO05D000088 3.4e-06 55.8 125 30.4
arahy.Tifrunner.gnm1.ann1.0Y7WSX Arachis hypogaea HOM05D000395 ORTHO05D000088 4.5e-06 55.5 83 37.3
Gorai.008G071300 Gossypium raimondii HOM05D000395 ORTHO05D000088 4.5e-06 55.5 117 34.2
Rhsim05G0079100 Rhododendron simsii HOM05D000395 ORTHO05D000088 4.5e-06 55.5 100 36.0
Sp6g26290 Schrenkiella parvula HOM05D007600 ORTHO05D009132 4.5e-06 55.5 106 30.2
vmacro04480 Vaccinium macrocarpon HOM05D000823 ORTHO05D000088 4.5e-06 55.5 114 31.6
Eucgr.G00890 Eucalyptus grandis HOM05D000395 ORTHO05D000088 5.8e-06 55.1 130 29.2
RhsimUnG0104500 Rhododendron simsii HOM05D000395 ORTHO05D000088 5.8e-06 55.1 117 34.2
SalBow7G0768 Salvia bowleyana HOM05D000823 ORTHO05D000088 5.8e-06 55.1 118 34.7
AL6G29100 Arabidopsis lyrata HOM05D007600 ORTHO05D009132 7.6e-06 54.7 106 29.2
Lj1g0016560 Lotus japonicus HOM05D000395 ORTHO05D000088 7.6e-06 54.7 151 29.1
Medtr1g021330 Medicago truncatula HOM05D000823 ORTHO05D000088 7.6e-06 54.7 118 32.2
Medtr1g021360 Medicago truncatula HOM05D000823 ORTHO05D000088 7.6e-06 54.7 125 32.0
PSO339G4062 Papaver somniferum HOM05D000395 ORTHO05D000088 7.6e-06 54.7 98 30.6
arahy.Tifrunner.gnm1.ann1.5R0IPH Arachis hypogaea HOM05D000395 ORTHO05D000088 9.9e-06 54.3 138 31.9
CSS0015634 Camellia sinensis var. sinensis HOM05D000395 ORTHO05D000088 9.9e-06 54.3 100 34.0
Cc00_g02950 Coffea canephora HOM05D000395 ORTHO05D000088 9.9e-06 54.3 100 32.0
Peaxi162Scf00463g00134 Petunia axillaris HOM05D000395 ORTHO05D000088 9.9e-06 54.3 127 30.7
Prupe.7G144200 Prunus persica HOM05D000395 ORTHO05D000088 9.9e-06 54.3 105 29.5
QL02p006444 Quercus lobata HOM05D000823 ORTHO05D000088 9.9e-06 54.3 115 33.0
Sp6g26220 Schrenkiella parvula HOM05D007600 ORTHO05D009132 9.9e-06 54.3 132 28.8
TWI09G1538 Tripterygium wilfordii HOM05D000395 ORTHO05D000088 9.9e-06 54.3 129 32.6


User provided reference genes

Program Settings