Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g06800 Fragaria vesca HOM05D004013 ORTHO05D004710 3.2e-242 841.3 412 100.0
FAN24G3388 Fragaria x ananassa HOM05D004013 ORTHO05D004710 1.5e-239 832.4 412 99.3
FAN27G1923 Fragaria x ananassa HOM05D004013 ORTHO05D004710 7.0e-237 823.5 412 97.8
FAN20G2928 Fragaria x ananassa HOM05D004013 ORTHO05D004710 5.9e-236 820.5 412 96.8
FAN15G0687 Fragaria x ananassa HOM05D004013 ORTHO05D004710 4.9e-230 800.8 395 98.5
RcHm_v2.0_Chr6g0259021 Rosa chinensis HOM05D004013 ORTHO05D004710 3.5e-212 741.5 413 88.6
MD00G1055200 Malus domestica HOM05D004013 ORTHO05D004710 5.8e-167 591.3 433 71.4
MD07G1000400 Malus domestica HOM05D004013 ORTHO05D004710 3.0e-163 578.9 433 70.2
Prupe.2G000200 Prunus persica HOM05D004013 ORTHO05D004710 3.0e-163 578.9 434 70.7
Cfa000589 Carpinus fangiana HOM05D004013 ORTHO05D004710 4.2e-157 558.5 430 67.2
Dinv28066 Davidia involucrata HOM05D004013 ORTHO05D004710 7.2e-157 557.8 430 66.3
CiPaw.09G068100 Carya illinoinensis HOM05D004013 ORTHO05D004710 1.6e-156 556.6 416 67.8
QL05p046231 Quercus lobata HOM05D004013 ORTHO05D004710 3.9e-155 552.0 429 67.1
CiPaw.10G057600 Carya illinoinensis HOM05D004013 ORTHO05D004710 9.7e-154 547.4 429 65.7
Duzib264G0158 Durio zibethinus HOM05D004013 ORTHO05D004710 1.7e-153 546.6 434 65.4
Atru.chr3.2025 Acer truncatum HOM05D004013 ORTHO05D004710 6.3e-153 544.7 433 64.7
Gohir.D12G001900 Gossypium hirsutum HOM05D004013 ORTHO05D004710 6.9e-152 541.2 429 64.8
GSVIVG01003913001 Vitis vinifera HOM05D004013 ORTHO05D004710 1.2e-151 540.4 434 64.5
Thecc.01G234100 Theobroma cacao HOM05D004013 ORTHO05D004710 2.0e-151 539.7 432 65.0
Gohir.A12G002200 Gossypium hirsutum HOM05D004013 ORTHO05D004710 4.5e-151 538.5 429 64.1
Gorai.008G001300 Gossypium raimondii HOM05D004013 ORTHO05D004710 4.5e-151 538.5 429 64.1
CANSAT78G0639 Cannabis sativa HOM05D004013 ORTHO05D004710 7.7e-151 537.7 432 64.8
VMungo1383G0353 Vigna mungo HOM05D004013 ORTHO05D004710 7.7e-151 537.7 418 65.1
Duzib147G1378 Durio zibethinus HOM05D004013 ORTHO05D004710 1.0e-150 537.3 433 64.4
CsaV3_2G011360 Cucumis sativus L. HOM05D004013 ORTHO05D004710 2.9e-150 535.8 422 65.6
Phvul.008G048900 Phaseolus vulgaris HOM05D004013 ORTHO05D004710 5.0e-150 535.0 419 65.2
MELO3C008520.2 Cucumis melo HOM05D004013 ORTHO05D004710 3.2e-149 532.3 422 64.5
Manes.01G009000 Manihot esculenta HOM05D004013 ORTHO05D004710 3.2e-149 532.3 416 65.6
Potri.007G147100 Populus trichocarpa HOM05D004013 ORTHO05D004710 9.4e-149 530.8 424 64.9
Hma1.2p1_0940F.1_g239620 Hydrangea macrophylla HOM05D004013 ORTHO05D004710 1.6e-148 530.0 431 64.5
arahy.Tifrunner.gnm1.ann1.LVD0DC Arachis hypogaea HOM05D004013 ORTHO05D004710 6.1e-148 528.1 430 62.1
Sed0016347 Sechium edule HOM05D004013 ORTHO05D004710 1.0e-147 527.3 419 64.9
Ciclev10019906m.g Citrus clementina HOM05D004013 ORTHO05D004710 1.4e-147 526.9 430 64.4
Potri.017G000500 Populus trichocarpa HOM05D004013 ORTHO05D004710 2.3e-147 526.2 425 63.8
COL.COLO4_06916 Corchorus olitorius HOM05D004013 ORTHO05D004710 3.0e-147 525.8 434 64.1
Glyma.18G248400 Glycine max HOM05D004013 ORTHO05D004710 3.0e-147 525.8 427 63.0
arahy.Tifrunner.gnm1.ann1.M4STP7 Arachis hypogaea HOM05D004013 ORTHO05D004710 5.1e-147 525.0 430 61.6
arahy.Tifrunner.gnm1.ann1.ERJ0Z2 Arachis hypogaea HOM05D004013 ORTHO05D004710 1.5e-146 523.5 441 60.8
CSS0003826 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 2.6e-146 522.7 431 61.9
CSS0048139 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 2.6e-146 522.7 431 61.9
Glyma.09G244800 Glycine max HOM05D004013 ORTHO05D004710 3.3e-146 522.3 427 62.3
Lj1g0014615 Lotus japonicus HOM05D004013 ORTHO05D004710 4.4e-146 521.9 419 64.2
Cpa.g.sc9.235 Carica papaya HOM05D004013 ORTHO05D004710 2.2e-145 519.6 422 64.0
Ca_08048_v3 Cicer arietinum L. HOM05D004013 ORTHO05D004710 2.4e-144 516.2 431 61.7
Ca_08054_v3 Cicer arietinum L. HOM05D004013 ORTHO05D004710 2.4e-144 516.2 431 61.7
TWI15G0551 Tripterygium wilfordii HOM05D004013 ORTHO05D004710 2.4e-144 516.2 431 62.6
TAR633G1686 Trochodendron aralioides HOM05D004013 ORTHO05D004710 4.1e-144 515.4 423 62.4
Eucgr.K03157 Eucalyptus grandis HOM05D004013 ORTHO05D004710 5.3e-144 515.0 428 63.3
Medtr7g081230 Medicago truncatula HOM05D004013 ORTHO05D004710 5.3e-144 515.0 427 61.4
TWI63G0479 Tripterygium wilfordii HOM05D004013 ORTHO05D004710 7.0e-144 514.6 433 62.6
Lj3C865T7 Lonicera japonica HOM05D004013 ORTHO05D004710 7.7e-143 511.1 425 61.9
Psat0s3112g0040 Pisum sativum HOM05D004013 ORTHO05D004710 1.7e-142 510.0 430 60.9
TAR365G0341 Trochodendron aralioides HOM05D004013 ORTHO05D004710 5.0e-142 508.4 420 63.1
TPR.G29111 Trifolium pratense HOM05D004013 ORTHO05D004710 1.1e-141 507.3 428 60.7
PGR142G2472 Punica granatum HOM05D004013 ORTHO05D004710 1.5e-141 506.9 423 62.4
Lalb_Chr01g0021691 Lupinus albus HOM05D004013 ORTHO05D004710 1.2e-140 503.8 430 60.2
Sp4g26220 Schrenkiella parvula HOM05D004013 ORTHO05D004710 2.7e-140 502.7 414 61.1
Lj6A740G51 Lonicera japonica HOM05D004013 ORTHO05D004710 6.1e-140 501.5 433 61.7
vmacro09116 Vaccinium macrocarpon HOM05D004013 ORTHO05D004710 1.8e-139 500.0 429 59.9
Hund22667 Selenicereus undatus HOM05D004013 ORTHO05D004710 2.0e-138 496.5 412 60.9
AL4G43020 Arabidopsis lyrata HOM05D004013 ORTHO05D004710 1.3e-137 493.8 418 60.3
DCAR_023584 Daucus carota HOM05D004013 ORTHO05D004710 2.8e-137 492.7 431 60.6
Nn1g09391 Nelumbo nucifera HOM05D004013 ORTHO05D004710 3.7e-137 492.3 365 66.0
AUR62023683 Chenopodium quinoa HOM05D004013 ORTHO05D004710 4.8e-137 491.9 410 61.2
arahy.Tifrunner.gnm1.ann1.AL59ZJ Arachis hypogaea HOM05D004013 ORTHO05D004710 1.1e-136 490.7 430 59.3
AUR62002510 Chenopodium quinoa HOM05D004013 ORTHO05D004710 1.1e-136 490.7 440 58.9
PSO732G0206 Papaver somniferum HOM05D004013 ORTHO05D004710 1.8e-136 490.0 415 61.2
Aa31LG1G25800 Aethionema arabicum HOM05D004013 ORTHO05D004710 7.0e-136 488.0 426 58.5
CDE04G0030 Ceratophyllum demersum HOM05D004013 ORTHO05D004710 5.9e-135 485.0 427 59.7
PSO675G0050 Papaver somniferum HOM05D004013 ORTHO05D004710 1.0e-134 484.2 415 60.2
HanXRQChr12g0363401 Helianthus annuus HOM05D004013 ORTHO05D004710 1.3e-134 483.8 411 60.3
BcaC02g12335 Brassica carinata HOM05D004013 ORTHO05D004710 1.7e-134 483.4 416 58.9
C04p05030 Brassica napus HOM05D004013 ORTHO05D004710 1.7e-134 483.4 416 58.9
BolC4t22136H Brassica oleracea HOM05D004013 ORTHO05D004710 1.7e-134 483.4 416 58.9
AT2G44140 Arabidopsis thaliana HOM05D004013 ORTHO05D004710 2.9e-134 482.6 417 58.5
Migut.L00278 Erythranthe guttata HOM05D004013 ORTHO05D004710 2.9e-134 482.6 424 59.9
Migut.L00578 Erythranthe guttata HOM05D004013 ORTHO05D004710 3.8e-134 482.3 411 61.1
CARHR139300 Cardamine hirsuta HOM05D004013 ORTHO05D004710 5.0e-134 481.9 414 58.5
HanXRQChr08g0212421 Helianthus annuus HOM05D004013 ORTHO05D004710 5.0e-134 481.9 411 60.3
ECA232G0201 Erigeron canadensis HOM05D004013 ORTHO05D004710 8.5e-134 481.1 425 58.4
MBI15_g08971_MAGBIO Magnolia biondii HOM05D004013 ORTHO05D004710 1.9e-133 479.9 424 59.2
Ah.07g203370 Amaranthus hybridus HOM05D004013 ORTHO05D004710 2.5e-133 479.6 426 59.6
PGSC0003DMG400032144 Solanum tuberosum HOM05D004013 ORTHO05D004710 3.2e-133 479.2 454 54.6
Lsat_1_v5_gn_8_45601 Lactuca sativa HOM05D004013 ORTHO05D004710 4.2e-133 478.8 424 59.2
Carub.0004s2669 Capsella rubella HOM05D004013 ORTHO05D004710 5.5e-133 478.4 414 57.5
BcaB02g08917 Brassica carinata HOM05D004013 ORTHO05D004710 9.4e-133 477.6 426 57.5
ECA233G0032 Erigeron canadensis HOM05D004013 ORTHO05D004710 9.4e-133 477.6 424 57.1
CDE06G1594 Ceratophyllum demersum HOM05D004013 ORTHO05D004710 2.7e-132 476.1 424 58.0
Sp5g03230 Schrenkiella parvula HOM05D004013 ORTHO05D004710 2.7e-132 476.1 417 58.8
BraA09t40658Z Brassica rapa HOM05D004013 ORTHO05D004710 6.1e-132 474.9 411 58.2
Sopen01g002230 Solanum pennellii HOM05D004013 ORTHO05D004710 6.1e-132 474.9 454 54.6
Ah.13g073110 Amaranthus hybridus HOM05D004013 ORTHO05D004710 8.0e-132 474.6 398 61.6
BcaC07g40539 Brassica carinata HOM05D004013 ORTHO05D004710 1.4e-131 473.8 408 58.1
CARHR170260 Cardamine hirsuta HOM05D004013 ORTHO05D004710 1.4e-131 473.8 419 58.2
Solyc01g006230.3 Solanum lycopersicum HOM05D004013 ORTHO05D004710 1.4e-131 473.8 454 54.4
A05p04250 Brassica napus HOM05D004013 ORTHO05D004710 1.8e-131 473.4 416 57.7
Oeu011024.1 Olea europaea HOM05D004013 ORTHO05D004710 2.3e-131 473.0 410 58.3
BraA05t19410Z Brassica rapa HOM05D004013 ORTHO05D004710 3.0e-131 472.6 416 57.7
A04p01980 Brassica napus HOM05D004013 ORTHO05D004710 6.8e-131 471.5 411 56.4
Lalb_Chr03g0040611 Lupinus albus HOM05D004013 ORTHO05D004710 6.8e-131 471.5 417 58.3
Nitab4.5_0001568g0070 Nicotiana tabacum HOM05D004013 ORTHO05D004710 6.8e-131 471.5 415 57.8
AT3G59950 Arabidopsis thaliana HOM05D004013 ORTHO05D004710 1.5e-130 470.3 419 56.8
Thhalv10005940m.g Eutrema salsugineum HOM05D004013 ORTHO05D004710 1.5e-130 470.3 414 58.2
BcaB02g08204 Brassica carinata HOM05D004013 ORTHO05D004710 2.0e-130 469.9 414 57.2
BraA04t15923Z Brassica rapa HOM05D004013 ORTHO05D004710 2.0e-130 469.9 411 56.9
Nitab4.5_0005132g0050 Nicotiana tabacum HOM05D004013 ORTHO05D004710 2.6e-130 469.5 412 58.5
Os04g0682000 Oryza sativa ssp. japonica HOM05D004013 ORTHO05D004710 3.4e-130 469.2 405 58.3
Os03g0391000 Oryza sativa ssp. japonica HOM05D004013 ORTHO05D004710 7.5e-130 468.0 405 58.8
CSS0004368 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 9.8e-130 467.6 430 58.4
Rhsim09G0091900 Rhododendron simsii HOM05D004013 ORTHO05D004710 1.3e-129 467.2 497 52.1
ATR0706G248 Amborella trichopoda HOM05D004013 ORTHO05D004710 2.2e-129 466.5 430 56.5
EL10Ac3g06192 Beta vulgaris HOM05D004013 ORTHO05D004710 2.2e-129 466.5 435 56.6
BcaC07g40400 Brassica carinata HOM05D004013 ORTHO05D004710 2.2e-129 466.5 412 59.0
CAN.G140.48 Capsicum annuum HOM05D004013 ORTHO05D004710 4.8e-129 465.3 453 54.3
AL5G42130 Arabidopsis lyrata HOM05D004013 ORTHO05D004710 6.3e-129 464.9 417 56.6
C04p32840 Brassica napus HOM05D004013 ORTHO05D004710 1.1e-128 464.2 417 55.9
SHI01175 Sapria himalayana HOM05D004013 ORTHO05D004710 1.4e-128 463.8 415 60.0
BolC8t51099H Brassica oleracea HOM05D004013 ORTHO05D004710 2.4e-128 463.0 416 57.0
BcaC02g10096 Brassica carinata HOM05D004013 ORTHO05D004710 3.1e-128 462.6 417 55.9
BolC4t24846H Brassica oleracea HOM05D004013 ORTHO05D004710 3.1e-128 462.6 417 55.9
Thhalv10001432m.g Eutrema salsugineum HOM05D004013 ORTHO05D004710 4.1e-128 462.2 407 59.0
Carub.0005s2667 Capsella rubella HOM05D004013 ORTHO05D004710 5.4e-128 461.8 372 60.8
A09p52290 Brassica napus HOM05D004013 ORTHO05D004710 9.1e-128 461.1 436 54.8
Zm00001eb065800 Zea mays HOM05D004013 ORTHO05D004710 9.1e-128 461.1 418 56.5
MSTRG.23493 Avicennia marina HOM05D004013 ORTHO05D004710 3.5e-127 459.1 409 58.9
Haze_06261 Corylus avellana HOM05D004013 ORTHO05D004710 7.7e-127 458.0 667 43.5
Dinv18636 Davidia involucrata HOM05D004013 ORTHO05D004710 6.5e-126 454.9 333 68.8
SalBow7G0073 Salvia bowleyana HOM05D004013 ORTHO05D004710 8.5e-126 454.5 473 52.9
SGA_v2.0_scaffold37G14795 Striga asiatica HOM05D004013 ORTHO05D004710 4.7e-124 448.7 408 56.1
SGA_v2.0_scaffold3G01797 Striga asiatica HOM05D004013 ORTHO05D004710 1.4e-123 447.2 431 55.7
DCAR_026793 Daucus carota HOM05D004013 ORTHO05D004710 5.2e-123 445.3 417 56.8
Zm00001eb433950 Zea mays HOM05D004013 ORTHO05D004710 1.5e-122 443.7 371 58.8
unitig_748.g8760 Utricularia gibba HOM05D004013 ORTHO05D004710 7.0e-120 434.9 424 53.1
HPP92_020809 Vanilla planifolia HOM05D004013 ORTHO05D004710 5.6e-117 425.2 421 53.4
Sed0011939 Sechium edule HOM05D004013 ORTHO05D004710 8.0e-116 421.4 299 68.6
vmacro10687 Vaccinium macrocarpon HOM05D004013 ORTHO05D004710 1.4e-115 420.6 500 48.8
Pp3c11_22820 Physcomitrium patens HOM05D004013 ORTHO05D004710 2.3e-115 419.9 411 52.8
ClCG06G010000 Citrullus lanatus HOM05D004013 ORTHO05D004710 5.7e-114 415.2 297 67.0
Oeu034368.2 Olea europaea HOM05D004013 ORTHO05D004710 1.7e-113 413.7 551 44.3
Mapoly0153s0038 Marchantia polymorpha HOM05D004013 ORTHO05D004710 1.4e-112 410.6 411 51.8
Peaxi162Scf00441g00621 Petunia axillaris HOM05D004013 ORTHO05D004710 9.2e-112 407.9 411 53.0
SEGI_37986 Sequoiadendron giganteum HOM05D004013 ORTHO05D004710 2.0e-111 406.8 430 51.9
Pp3c7_280 Physcomitrium patens HOM05D004013 ORTHO05D004710 2.8e-108 396.4 411 50.6
THA.LOC104808419 Tarenaya hassleriana HOM05D004013 ORTHO05D004710 2.4e-104 383.3 306 62.4
SMO145G0104 Selaginella moellendorffii HOM05D004013 ORTHO05D004710 1.2e-100 370.9 386 52.8
Sc08g0007990 Simmondsia chinensis HOM05D004013 ORTHO05D004710 1.6e-100 370.5 312 58.0
Actinidia29462 Actinidia chinensis HOM05D004013 ORTHO05D004710 1.6e-79 300.8 224 65.6
Oeu053147.1 Olea europaea HOM05D004013 ORTHO05D004710 6.9e-75 285.4 264 56.1
Zm00001eb419970 Zea mays HOM05D004013 ORTHO05D004710 4.4e-74 282.7 209 63.2
C08p34940 Brassica napus HOM05D004013 ORTHO05D004710 7.4e-69 265.4 221 57.5
CBR_g21952 Chara braunii HOM05D004013 ORTHO05D004710 6.9e-59 232.3 320 41.6
Zm00001eb264230 Zea mays HOM05D004013 ORTHO05D004710 9.0e-59 231.9 244 50.8
Hma1.2p1_1910F.1_g307280 Hydrangea macrophylla HOM05D004013 ORTHO05D004710 1.2e-55 221.5 215 56.7
Actinidia29461 Actinidia chinensis HOM05D004013 ORTHO05D004710 1.9e-53 214.2 175 61.1
Sabra17G0005400 Salix brachista HOM05D004013 ORTHO05D004710 5.7e-53 212.6 197 56.3
PRCOL_00001711 Prasinoderma coloniale HOM05D004013 ORTHO05D004710 2.6e-50 203.8 450 33.6
Oeu037862.1 Olea europaea HOM05D004013 ORTHO05D004710 1.3e-44 184.9 286 37.8
Actinidia36638 Actinidia chinensis HOM05D004013 ORTHO05D004710 9.0e-43 178.7 418 34.0
unitig_32.g11897 Utricularia gibba HOM05D004013 ORTHO05D004710 4.2e-32 143.3 278 37.4
C08p34950 Brassica napus HOM05D004013 ORTHO05D004710 1.6e-31 141.4 124 58.9
MCO13G568 Micromonas commoda HOM05D004013 ORTHO05D004710 3.7e-28 130.2 297 30.6
THA.LOC104804900 Tarenaya hassleriana HOM05D004013 ORTHO05D004710 6.3e-28 129.4 200 39.5
Cre12.g510100 Chlamydomonas reinhardtii HOM05D004013 ORTHO05D004710 1.0e-25 122.1 604 22.5
Actinidia03474 Actinidia chinensis HOM05D004013 ORTHO05D004710 1.4e-22 111.7 143 45.5
ClCG06G009970 Citrullus lanatus HOM05D004013 ORTHO05D004710 1.4e-22 111.7 86 62.8
Peaxi162Scf00271g00518 Petunia axillaris HOM05D004013 ORTHO05D004710 4.0e-22 110.2 124 51.6
arahy.Tifrunner.gnm1.ann1.MVA4LE Arachis hypogaea HOM05D004013 ORTHO05D004710 6.7e-22 109.4 105 58.1
arahy.Tifrunner.gnm1.ann1.AC7664 Arachis hypogaea HOM05D004013 ORTHO05D004710 1.3e-17 95.1 104 52.9
ATR0807G232 Amborella trichopoda HOM05D004013 ORTHO05D004710 1.8e-11 74.7 77 50.6
Cfa022146 Carpinus fangiana HOM05D004013 ORTHO05D124891 5.9e-10 69.7 380 25.5
ATR0807G053 Amborella trichopoda HOM05D004013 ORTHO05D004710 5.0e-09 66.6 45 64.4
Atru.chr3.2624 Acer truncatum HOM05D004013 ORTHO05D004710 6.8e-06 56.2 36 69.4
CBR_g50173 Chara braunii HOM05D004013 ORTHO05D004710 8.8e-06 55.8 88 40.9


User provided reference genes

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